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NBDC - LSDB Archive
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BP911616
Clone id YMU001_000007_B05
Library
Length 303
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000007_B05.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
GAATTCGCGGCCGCAGAGAGTCGTTCATGGATGATCTTATGAAGGGAAAGGTTCAACTTC
CTGGTTGAGAGAAGGTGGTCCACAAACAGGAAGTGGGAGTAAAAACTATACTGTGGTATG
ACACTCTTGATCATGTCATGAATGAGTGCAAGGAATTTGTTGAAGCCAAGCGTAATGATG
TGGTCTTTTGGAAAGATGGATTGATACACTTGCGAGAAATAGGGCTATCTCTAAAGACCA
AATATGGAAGAGGTGGTATGAAGAAAAGCATGGAAGAGATGTTGAAGGAACATCATGTGA
GTG
■■Homology search results ■■ -
sp_hit_id P32798
Definition sp|P32798|COT1_YEAST Cobalt uptake protein COT1 OS=Saccharomyces cerevisiae
Align length 41
Score (bit) 33.5
E-value 0.34
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP911616|Adiantum capillus-veneris mRNA, clone:
YMU001_000007_B05.
         (287 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P32798|COT1_YEAST Cobalt uptake protein COT1 OS=Saccharomyces...    33   0.34 
sp|Q8VG44|OL473_MOUSE Olfactory receptor 473 OS=Mus musculus GN=...    33   0.57 
sp|Q8VG43|OL472_MOUSE Olfactory receptor 472 OS=Mus musculus GN=...    32   0.98 
sp|Q6IEU7|OR5MA_HUMAN Olfactory receptor 5M10 OS=Homo sapiens GN...    30   4.8  
sp|Q38PS0|COX1_MAMPR Cytochrome c oxidase subunit 1 OS=Mammuthus...    29   6.3  
sp|P20107|ZRC1_YEAST Zinc/cadmium resistance protein OS=Saccharo...    29   8.3  
sp|Q9R1Q6|T176B_MOUSE Transmembrane protein 176B OS=Mus musculus...    29   8.3  
sp|Q8NGP8|OR5M1_HUMAN Olfactory receptor 5M1 OS=Homo sapiens GN=...    29   8.3  

>sp|P32798|COT1_YEAST Cobalt uptake protein COT1 OS=Saccharomyces
           cerevisiae GN=COT1 PE=1 SV=2
          Length = 439

 Score = 33.5 bits (75), Expect = 0.34
 Identities = 15/41 (36%), Positives = 24/41 (58%)
 Frame = -1

Query: 260 LPCFSSYHLFHIWSLEIALFLASVSIHLSKRPHHYAWLQQI 138
           +P   + H FHIW+L  ++F+AS+ I L   P  +  L +I
Sbjct: 323 IPGIIAIHDFHIWNLTESIFIASLHIQLDISPEQFTDLAKI 363


>sp|Q8VG44|OL473_MOUSE Olfactory receptor 473 OS=Mus musculus
           GN=Olfr473 PE=2 SV=1
          Length = 310

 Score = 32.7 bits (73), Expect = 0.57
 Identities = 31/85 (36%), Positives = 39/85 (45%), Gaps = 4/85 (4%)
 Frame = -2

Query: 244 HTTSS---IFGL*R*PYFSQVYQSIFPKDHIITLGFN-KFLALIHDMIKSVIPQYSFYSH 77
           HTT +   I GL   P    V+  IF   +I+TL  N   + LI    +   P Y F SH
Sbjct: 6   HTTVAELIILGLTEDPKLCIVFFVIFLGVYIVTLVGNISIITLIRISSQLHTPMYLFLSH 65

Query: 76  FLFVDHLLSTRKLNLSLHKIIHERL 2
             FVD L ST     S+  I+H  L
Sbjct: 66  LAFVDILYST-----SVSVIMHMEL 85


>sp|Q8VG43|OL472_MOUSE Olfactory receptor 472 OS=Mus musculus
           GN=Olfr472 PE=2 SV=1
          Length = 310

 Score = 32.0 bits (71), Expect = 0.98
 Identities = 27/70 (38%), Positives = 33/70 (47%), Gaps = 4/70 (5%)
 Frame = -2

Query: 244 HTTSS---IFGL*R*PYFSQVYQSIFPKDHIITLGFN-KFLALIHDMIKSVIPQYSFYSH 77
           HTT +   I GL   P    V+  IF   +IITL  N   + LI    +   P Y F SH
Sbjct: 6   HTTVAELIILGLTEDPKLCIVFFVIFLGVYIITLVGNISIITLIRISSQLHTPMYLFLSH 65

Query: 76  FLFVDHLLST 47
             FVD + ST
Sbjct: 66  LAFVDIVFST 75


>sp|Q6IEU7|OR5MA_HUMAN Olfactory receptor 5M10 OS=Homo sapiens
           GN=OR5M10 PE=2 SV=1
          Length = 315

 Score = 29.6 bits (65), Expect = 4.8
 Identities = 21/76 (27%), Positives = 32/76 (42%), Gaps = 1/76 (1%)
 Frame = -2

Query: 229 IFGL*R*PYFSQVYQSIFPKDHIITLGFNK-FLALIHDMIKSVIPQYSFYSHFLFVDHLL 53
           + GL   P   ++   +F   ++ITL  N   + LI    +   P Y F  H  FVD   
Sbjct: 14  LLGLTDDPVLEKILFGVFLAIYLITLAGNLCMILLIRTNSQLQTPMYFFLGHLSFVDICY 73

Query: 52  STRKLNLSLHKIIHER 5
           S+      LH  + E+
Sbjct: 74  SSNVTPNMLHNFLSEQ 89


>sp|Q38PS0|COX1_MAMPR Cytochrome c oxidase subunit 1 OS=Mammuthus
           primigenius GN=MT-CO1 PE=3 SV=1
          Length = 515

 Score = 29.3 bits (64), Expect = 6.3
 Identities = 14/45 (31%), Positives = 24/45 (53%)
 Frame = -1

Query: 257 PCFSSYHLFHIWSLEIALFLASVSIHLSKRPHHYAWLQQIPCTHS 123
           P FS Y L H W+ +I   +  + ++L+  P H+  L  +P  +S
Sbjct: 398 PLFSGYTLNHTWA-KIQFLVMFIGVNLTFFPQHFLGLSGMPRRYS 441


>sp|P20107|ZRC1_YEAST Zinc/cadmium resistance protein
           OS=Saccharomyces cerevisiae GN=ZRC1 PE=1 SV=2
          Length = 442

 Score = 28.9 bits (63), Expect = 8.3
 Identities = 9/36 (25%), Positives = 22/36 (61%)
 Frame = -1

Query: 263 SLPCFSSYHLFHIWSLEIALFLASVSIHLSKRPHHY 156
           ++P   + H FH+W+L  ++++AS+ + +   P  +
Sbjct: 313 AVPGVIAVHDFHVWNLTESIYIASIHVQIDCAPDKF 348


>sp|Q9R1Q6|T176B_MOUSE Transmembrane protein 176B OS=Mus musculus
           GN=Tmem176b PE=2 SV=1
          Length = 263

 Score = 28.9 bits (63), Expect = 8.3
 Identities = 18/70 (25%), Positives = 31/70 (44%), Gaps = 9/70 (12%)
 Frame = +2

Query: 80  GVKTILWYDTLDHVMNECKEFVEAKRN---------DVVFWKDGLIHLREIGLSLKTKYG 232
           G  T+ + D  D     C+E++    N          VV   + ++ +  +GLSL++ YG
Sbjct: 170 GYGTVRYSDDSDWKTERCREYLNMMMNLFLAFCIMLTVVCILEIVVSVASLGLSLRSMYG 229

Query: 233 RGGMKKSMEE 262
           R     + EE
Sbjct: 230 RSSQALNEEE 239


>sp|Q8NGP8|OR5M1_HUMAN Olfactory receptor 5M1 OS=Homo sapiens
           GN=OR5M1 PE=2 SV=1
          Length = 315

 Score = 28.9 bits (63), Expect = 8.3
 Identities = 21/76 (27%), Positives = 31/76 (40%), Gaps = 1/76 (1%)
 Frame = -2

Query: 229 IFGL*R*PYFSQVYQSIFPKDHIITLGFNK-FLALIHDMIKSVIPQYSFYSHFLFVDHLL 53
           + GL   P   ++   +F   ++ITL  N   + LI        P Y F  H  FVD   
Sbjct: 14  LLGLTDDPVLEKILFGVFLAIYLITLAGNLCMILLIRTNSHLQTPMYFFLGHLSFVDICY 73

Query: 52  STRKLNLSLHKIIHER 5
           S+      LH  + E+
Sbjct: 74  SSNVTPNMLHNFLSEQ 89
tr_hit_id A9U319
Definition tr|A9U319|A9U319_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
Align length 64
Score (bit) 69.7
E-value 7.0e-11
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP911616|Adiantum capillus-veneris mRNA, clone:
YMU001_000007_B05.
         (287 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9U319|A9U319_PHYPA Predicted protein OS=Physcomitrella paten...    70   7e-11
tr|A9RCF3|A9RCF3_PHYPA Predicted protein OS=Physcomitrella paten...    69   1e-10
tr|A9STR6|A9STR6_PHYPA Predicted protein OS=Physcomitrella paten...    69   2e-10
tr|A9TW93|A9TW93_PHYPA Predicted protein OS=Physcomitrella paten...    68   2e-10
tr|A9SRG5|A9SRG5_PHYPA Predicted protein OS=Physcomitrella paten...    67   3e-10
tr|A9T3X3|A9T3X3_PHYPA Predicted protein OS=Physcomitrella paten...    65   2e-09
tr|A9TU63|A9TU63_PHYPA Predicted protein OS=Physcomitrella paten...    65   2e-09
tr|A9TC30|A9TC30_PHYPA Predicted protein OS=Physcomitrella paten...    65   2e-09
tr|A9TU52|A9TU52_PHYPA Predicted protein OS=Physcomitrella paten...    64   4e-09
tr|A9TCS9|A9TCS9_PHYPA Predicted protein OS=Physcomitrella paten...    64   4e-09
tr|A9SYY3|A9SYY3_PHYPA Predicted protein OS=Physcomitrella paten...    63   6e-09
tr|A9TLL2|A9TLL2_PHYPA Predicted protein OS=Physcomitrella paten...    63   8e-09
tr|A9S647|A9S647_PHYPA Predicted protein OS=Physcomitrella paten...    63   8e-09
tr|A9RPI0|A9RPI0_PHYPA Predicted protein OS=Physcomitrella paten...    62   1e-08
tr|A9RJ89|A9RJ89_PHYPA Predicted protein OS=Physcomitrella paten...    62   1e-08
tr|A9RIU4|A9RIU4_PHYPA Predicted protein OS=Physcomitrella paten...    62   1e-08
tr|A9RCA2|A9RCA2_PHYPA Predicted protein OS=Physcomitrella paten...    62   1e-08
tr|A9TJZ0|A9TJZ0_PHYPA Predicted protein OS=Physcomitrella paten...    62   1e-08
tr|A9SJT6|A9SJT6_PHYPA Predicted protein OS=Physcomitrella paten...    62   1e-08
tr|A9RVS5|A9RVS5_PHYPA Predicted protein OS=Physcomitrella paten...    61   3e-08
tr|A9SWA8|A9SWA8_PHYPA Predicted protein OS=Physcomitrella paten...    60   4e-08
tr|A9ST11|A9ST11_PHYPA Predicted protein OS=Physcomitrella paten...    60   4e-08
tr|A9RWL6|A9RWL6_PHYPA Predicted protein OS=Physcomitrella paten...    60   4e-08
tr|A9TR50|A9TR50_PHYPA Predicted protein OS=Physcomitrella paten...    60   5e-08
tr|A9TR49|A9TR49_PHYPA Predicted protein OS=Physcomitrella paten...    60   5e-08
tr|A9SC11|A9SC11_PHYPA Predicted protein OS=Physcomitrella paten...    60   5e-08
tr|A9SBL6|A9SBL6_PHYPA Predicted protein OS=Physcomitrella paten...    60   5e-08
tr|A9RSN7|A9RSN7_PHYPA Predicted protein OS=Physcomitrella paten...    60   5e-08
tr|A9T400|A9T400_PHYPA Predicted protein OS=Physcomitrella paten...    60   7e-08
tr|A9SPB4|A9SPB4_PHYPA Predicted protein OS=Physcomitrella paten...    60   7e-08

>tr|A9U319|A9U319_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_101132 PE=4 SV=1
          Length = 278

 Score = 69.7 bits (169), Expect = 7e-11
 Identities = 29/64 (45%), Positives = 41/64 (64%)
 Frame = +2

Query: 83  VKTILWYDTLDHVMNECKEFVEAKRNDVVFWKDGLIHLREIGLSLKTKYGRGGMKKSMEE 262
           +K  +W D ++H   EC  F++  R  V+ WKDG I LR+ G  LKT +G+GGMKK +EE
Sbjct: 153 IKRCIWCDNMEHPRRECGNFIDILRQGVIIWKDGKIALRDTGKFLKTNFGKGGMKKLLEE 212

Query: 263 MLKE 274
            L +
Sbjct: 213 HLSQ 216


>tr|A9RCF3|A9RCF3_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_64503 PE=4 SV=1
          Length = 643

 Score = 68.9 bits (167), Expect = 1e-10
 Identities = 28/64 (43%), Positives = 43/64 (67%)
 Frame = +2

Query: 83  VKTILWYDTLDHVMNECKEFVEAKRNDVVFWKDGLIHLREIGLSLKTKYGRGGMKKSMEE 262
           ++  +W D+++H   EC +F++  R  V+ WKDG I LR+ G  LKT +G+GGMKK +EE
Sbjct: 182 IQRCIWCDSMEHPRRECGDFIDILRQGVILWKDGKIALRDTGEFLKTNFGKGGMKKVLEE 241

Query: 263 MLKE 274
            L +
Sbjct: 242 HLSQ 245


>tr|A9STR6|A9STR6_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_83884 PE=4 SV=1
          Length = 296

 Score = 68.6 bits (166), Expect = 2e-10
 Identities = 32/78 (41%), Positives = 47/78 (60%)
 Frame = +2

Query: 53  EKVVHKQEVGVKTILWYDTLDHVMNECKEFVEAKRNDVVFWKDGLIHLREIGLSLKTKYG 232
           E V+H+        +W D++DH   ECK+F EA R  V F+KDG+IH +E G  L+T + 
Sbjct: 140 EGVIHR-------CMWCDSIDHSKKECKDFTEALRKGVFFFKDGMIHSKESGEKLETNFS 192

Query: 233 RGGMKKSMEEMLKEHHVS 286
           +GGMK  + +  K H +S
Sbjct: 193 KGGMKLFIGDTFKVHTIS 210


>tr|A9TW93|A9TW93_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_98120 PE=4 SV=1
          Length = 560

 Score = 68.2 bits (165), Expect = 2e-10
 Identities = 33/78 (42%), Positives = 48/78 (61%)
 Frame = +2

Query: 53  EKVVHKQEVGVKTILWYDTLDHVMNECKEFVEAKRNDVVFWKDGLIHLREIGLSLKTKYG 232
           E VVH+        +W D++DH   EC+EF+E  R  VVF+KDG+IH +E G  L+T +G
Sbjct: 299 EGVVHR-------CMWCDSIDHSRKECEEFIEKLRKRVVFFKDGMIHSKENGEKLETNFG 351

Query: 233 RGGMKKSMEEMLKEHHVS 286
           +GGMK  + +  K   +S
Sbjct: 352 KGGMKLFIGDTFKVQTIS 369


>tr|A9SRG5|A9SRG5_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_82862 PE=4 SV=1
          Length = 506

 Score = 67.4 bits (163), Expect = 3e-10
 Identities = 33/78 (42%), Positives = 48/78 (61%)
 Frame = +2

Query: 53  EKVVHKQEVGVKTILWYDTLDHVMNECKEFVEAKRNDVVFWKDGLIHLREIGLSLKTKYG 232
           E VVH+        +W D++DH   EC+EF+EA R  VVF+KDG+IH +E G  L+T +G
Sbjct: 213 EGVVHR-------CMWCDSIDHSRRECEEFIEALRKGVVFFKDGMIHSKENGEKLETNFG 265

Query: 233 RGGMKKSMEEMLKEHHVS 286
           + GMK  + +  K   +S
Sbjct: 266 KRGMKLFIGDTFKVQTIS 283


>tr|A9T3X3|A9T3X3_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_87748 PE=4 SV=1
          Length = 707

 Score = 65.1 bits (157), Expect = 2e-09
 Identities = 32/92 (34%), Positives = 53/92 (57%), Gaps = 4/92 (4%)
 Frame = +2

Query: 11  MDDLMKGKVQLPG*EKVVHKQEVG----VKTILWYDTLDHVMNECKEFVEAKRNDVVFWK 178
           M DL    V+L   +++   + V     ++  +W D+++H   +C +F++  R  V+ WK
Sbjct: 280 MKDLQIKSVKLKEKKRLSESKSVSKPGYIQRCIWCDSMEHPRRKCGDFIDILRQGVILWK 339

Query: 179 DGLIHLREIGLSLKTKYGRGGMKKSMEEMLKE 274
           DG I LR+    LKT +G+GGMKK +EE L +
Sbjct: 340 DGKIALRDTCEFLKTNFGKGGMKKVLEEHLSQ 371


>tr|A9TU63|A9TU63_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_97322 PE=4 SV=1
          Length = 791

 Score = 64.7 bits (156), Expect = 2e-09
 Identities = 26/64 (40%), Positives = 42/64 (65%)
 Frame = +2

Query: 83  VKTILWYDTLDHVMNECKEFVEAKRNDVVFWKDGLIHLREIGLSLKTKYGRGGMKKSMEE 262
           ++  +W ++++H   EC +F    +  V+ WKDG I LR+IG  LKT +G+GGMKK +EE
Sbjct: 230 IQRCIWCNSIEHPRKECGDFANILQQGVILWKDGKIALRDIGEFLKTNFGKGGMKKVLEE 289

Query: 263 MLKE 274
            + +
Sbjct: 290 HISQ 293


>tr|A9TC30|A9TC30_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_90813 PE=4 SV=1
          Length = 423

 Score = 64.7 bits (156), Expect = 2e-09
 Identities = 32/78 (41%), Positives = 46/78 (58%)
 Frame = +2

Query: 53  EKVVHKQEVGVKTILWYDTLDHVMNECKEFVEAKRNDVVFWKDGLIHLREIGLSLKTKYG 232
           E VVH+        +W D +DH   EC+EF EA    VVF+KDG++H +E G  L+T +G
Sbjct: 213 EGVVHR-------CMWCDNIDHSRRECEEFTEALCKGVVFFKDGMMHSKENGEKLETNFG 265

Query: 233 RGGMKKSMEEMLKEHHVS 286
           +GGMK  + +  K   +S
Sbjct: 266 KGGMKLFIGDTFKVQTIS 283


>tr|A9TU52|A9TU52_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_97310 PE=4 SV=1
          Length = 1223

 Score = 63.9 bits (154), Expect = 4e-09
 Identities = 26/60 (43%), Positives = 40/60 (66%)
 Frame = +2

Query: 95  LWYDTLDHVMNECKEFVEAKRNDVVFWKDGLIHLREIGLSLKTKYGRGGMKKSMEEMLKE 274
           +W D+++H   +C +FV   +  V+ WKDG I LR+ G  LKT +G+GGMKK +EE + +
Sbjct: 599 IWCDSMEHPRRKCGDFVNILQQGVILWKDGKIALRDTGEFLKTNFGKGGMKKVLEEHISQ 658


>tr|A9TCS9|A9TCS9_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_91078 PE=4 SV=1
          Length = 373

 Score = 63.9 bits (154), Expect = 4e-09
 Identities = 28/55 (50%), Positives = 37/55 (67%)
 Frame = +2

Query: 83  VKTILWYDTLDHVMNECKEFVEAKRNDVVFWKDGLIHLREIGLSLKTKYGRGGMK 247
           V   +W D +DH+  EC+E  E  R  VVF+KDGLIH +E G  L+T +G+GGMK
Sbjct: 220 VHRCMWCDNIDHLRRECEECTEILRKGVVFFKDGLIHSKENGEKLETNFGKGGMK 274