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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP911618
Clone id YMU001_000007_B07
Library
Length 473
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000007_B07.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
CATTCCTTGAGCGATGGTGGCTCCAAGGGCACCAAGGAGGGAGCCACCGCCACTTGGCGC
CGGAGCTGGTGGAGGGGCATGTTGAGCAGGAGCAGGAGGTGGTGCCTTGCGAGAGGGAGG
AGGAGCACTACGCACAGGGCGAGGAGCATGACGCCCCAGCACAAACAAAATAGCACAAAT
TTTTCAGACAAGACAGTGCTTGGGGAAAATAATGACCAACAGTAGTGTTCGATTTCTGGA
AATAATCAATACTACACAATAACACAGATTGTAACTCTGCAGCATATGGGGAGAATCAAG
ATCTGCTACTATGCTAGCACATATCCCTCACAAAGCCTAAACCTTTAACCTCGGAGACAC
ACAAAATGTCATTTGCGTCTGTTCGTAAGTGCATGAAGAGACGTGTAGGCGAGATGCCAG
CCATAAAGAACATTAAACAGAGCACATCCAAGTCAACTGCGTATGTCCTTAAC
■■Homology search results ■■ -
sp_hit_id A7XCE8
Definition sp|A7XCE8|ORF11_TTVV3 ORF1/1 protein OS=Torque teno virus (isolate Human/Finland/Hel32/2002)
Align length 50
Score (bit) 31.2
E-value 2.4
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP911618|Adiantum capillus-veneris mRNA, clone:
YMU001_000007_B07.
         (473 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|A7XCE8|ORF11_TTVV3 ORF1/1 protein OS=Torque teno virus (isola...    31   2.4  
sp|P09707|US31_HCMVA Uncharacterized protein HHRF6 OS=Human cyto...    31   3.2  
sp|Q6BS08|ATG1_DEBHA Serine/threonine-protein kinase ATG1 OS=Deb...    31   3.2  
sp|Q36424|NU4M_LOCMI NADH-ubiquinone oxidoreductase chain 4 OS=L...    30   4.2  
sp|Q02629|NU100_YEAST Nucleoporin NUP100/NSP100 OS=Saccharomyces...    30   5.4  
sp|A6P320|MARHB_RAT E3 ubiquitin-protein ligase MARCH11 OS=Rattu...    29   9.3  
sp|Q8CBH7|MARHB_MOUSE E3 ubiquitin-protein ligase MARCH11 OS=Mus...    29   9.3  
sp|A6NNE9|MARHB_HUMAN E3 ubiquitin-protein ligase MARCH11 OS=Hom...    29   9.3  

>sp|A7XCE8|ORF11_TTVV3 ORF1/1 protein OS=Torque teno virus (isolate
           Human/Finland/Hel32/2002) GN=ORF1/1 PE=4 SV=1
          Length = 199

 Score = 31.2 bits (69), Expect = 2.4
 Identities = 19/50 (38%), Positives = 22/50 (44%), Gaps = 3/50 (6%)
 Frame = +1

Query: 58  RRSWWRGMLSRSRRWCLARGRR---STTHRARSMTPQHKQNSTNFSDKTV 198
           RR WW+    R RRW   R RR   +  HRAR    +H  N    S   V
Sbjct: 11  RRGWWK---PRRRRWRRRRARRRGPARRHRARRRIVRHPCNGQTSSGNRV 57


>sp|P09707|US31_HCMVA Uncharacterized protein HHRF6 OS=Human
           cytomegalovirus (strain AD169) GN=US31 PE=3 SV=3
          Length = 161

 Score = 30.8 bits (68), Expect = 3.2
 Identities = 21/78 (26%), Positives = 35/78 (44%)
 Frame = +1

Query: 19  GSKGTKEGATATWRRSWWRGMLSRSRRWCLARGRRSTTHRARSMTPQHKQNSTNFSDKTV 198
           GS  +  G  A  + +WW+ +   +RRW   R       RAR  TP +   S+  S ++ 
Sbjct: 89  GSSASSSGFVAESKFTWWKRLRHSTRRWLFRR------RRAR-YTPSNCGESSTSSGQS- 140

Query: 199 LGENNDQQ*CSISGNNQY 252
              + D+  CS+  +  Y
Sbjct: 141 ---SGDESNCSLRTHGVY 155


>sp|Q6BS08|ATG1_DEBHA Serine/threonine-protein kinase ATG1
           OS=Debaryomyces hansenii GN=ATG1 PE=3 SV=2
          Length = 875

 Score = 30.8 bits (68), Expect = 3.2
 Identities = 17/40 (42%), Positives = 22/40 (55%)
 Frame = +3

Query: 354 ETHKMSFASVRKCMKRRVGEMPAIKNIKQSTSKSTAYVLN 473
           E  K SFA+V KC   +  E  AIK++ +S  KS   V N
Sbjct: 27  EIGKGSFATVYKCFNTKTNESVAIKSVVRSKLKSKKLVEN 66


>sp|Q36424|NU4M_LOCMI NADH-ubiquinone oxidoreductase chain 4
           OS=Locusta migratoria GN=ND4 PE=3 SV=1
          Length = 444

 Score = 30.4 bits (67), Expect = 4.2
 Identities = 13/43 (30%), Positives = 22/43 (51%)
 Frame = -2

Query: 295 FSPYAAELQSVLLCSIDYFQKSNTTVGHYFPQALSCLKNLCYF 167
           +S +      V  CS+ YF++ +    H+FP  L CLK   ++
Sbjct: 401 YSQHGLYYSGVYTCSLGYFREYHLLFLHWFPLNLLCLKGEYFY 443


>sp|Q02629|NU100_YEAST Nucleoporin NUP100/NSP100 OS=Saccharomyces
           cerevisiae GN=NUP100 PE=1 SV=1
          Length = 959

 Score = 30.0 bits (66), Expect = 5.4
 Identities = 16/44 (36%), Positives = 27/44 (61%)
 Frame = +1

Query: 115 GRRSTTHRARSMTPQHKQNSTNFSDKTVLGENNDQQ*CSISGNN 246
           G+ +++++  S +    QNS N S + V G+NN+Q    I+GNN
Sbjct: 274 GQMNSSNQGSSNSGLFGQNSMNSSTQGVFGQNNNQM--QINGNN 315


>sp|A6P320|MARHB_RAT E3 ubiquitin-protein ligase MARCH11 OS=Rattus
           norvegicus GN=March11 PE=1 SV=1
          Length = 398

 Score = 29.3 bits (64), Expect = 9.3
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = -1

Query: 245 LFPEIEHYCWSLFSPSTVLSEKFVLFCLCWGV 150
           L   +    WS FSP  V   K +LF +C+G+
Sbjct: 251 LIASVTWLLWSAFSPYAVWQRKDILFQICYGM 282


>sp|Q8CBH7|MARHB_MOUSE E3 ubiquitin-protein ligase MARCH11 OS=Mus
           musculus GN=March11 PE=2 SV=2
          Length = 400

 Score = 29.3 bits (64), Expect = 9.3
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = -1

Query: 245 LFPEIEHYCWSLFSPSTVLSEKFVLFCLCWGV 150
           L   +    WS FSP  V   K +LF +C+G+
Sbjct: 253 LIASVTWLLWSAFSPYAVWQRKDILFQICYGM 284


>sp|A6NNE9|MARHB_HUMAN E3 ubiquitin-protein ligase MARCH11 OS=Homo
           sapiens GN=MARCH11 PE=2 SV=3
          Length = 402

 Score = 29.3 bits (64), Expect = 9.3
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = -1

Query: 245 LFPEIEHYCWSLFSPSTVLSEKFVLFCLCWGV 150
           L   +    WS FSP  V   K +LF +C+G+
Sbjct: 255 LIASVTWLLWSAFSPYAVWQRKDILFQICYGM 286
tr_hit_id B6P661
Definition tr|B6P661|B6P661_BRAFL Putative uncharacterized protein OS=Branchiostoma floridae
Align length 90
Score (bit) 34.7
E-value 2.4
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP911618|Adiantum capillus-veneris mRNA, clone:
YMU001_000007_B07.
         (473 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B6P661|B6P661_BRAFL Putative uncharacterized protein OS=Branc...    35   2.4  
tr|A3IMR3|A3IMR3_9CHRO GGDEF family protein OS=Cyanothece sp. CC...    34   3.2  
tr|B7CT69|B7CT69_BURPS Putative uncharacterized protein OS=Burkh...    33   5.4  
tr|A8EJS8|A8EJS8_BURPS Putative uncharacterized protein OS=Burkh...    33   5.4  
tr|A0YTC6|A0YTC6_9CYAN Sensory transduction histidine kinase OS=...    33   5.4  
tr|A8XYJ0|A8XYJ0_CAEBR CBR-CLEC-146 protein OS=Caenorhabditis br...    33   5.4  
tr|B4B528|B4B528_9CHRO Diguanylate cyclase with PAS/PAC and GAF ...    33   7.1  
tr|B8LC00|B8LC00_THAPS Predicted protein OS=Thalassiosira pseudo...    33   7.1  
tr|B5X1L7|B5X1L7_SALSA Splicing factor, arginine/serine-rich 7 O...    33   9.3  
tr|Q8QRS9|Q8QRS9_9BETA US31 OS=Panine herpesvirus 2 PE=4 SV=1          33   9.3  
tr|B5VZ91|B5VZ91_SPIMA Diguanylate cyclase OS=Arthrospira maxima...    33   9.3  

>tr|B6P661|B6P661_BRAFL Putative uncharacterized protein
           OS=Branchiostoma floridae GN=BRAFLDRAFT_130306 PE=4 SV=1
          Length = 698

 Score = 34.7 bits (78), Expect = 2.4
 Identities = 24/90 (26%), Positives = 44/90 (48%), Gaps = 1/90 (1%)
 Frame = +1

Query: 34  KEGATATWRRSWWRGMLSRSRRWCLARGRRSTTHRA-RSMTPQHKQNSTNFSDKTVLGEN 210
           K+G+  +W RS  + +  +S    L R + ST  +A R  T Q + NST  S + V    
Sbjct: 339 KQGSAFSWTRSTEKQITLKSSVSSLGRFKYSTLSQAKRKKTSQEEVNSTISSQEEVNSTT 398

Query: 211 NDQQ*CSISGNNQYYTITQIVTLQHMGRIK 300
           + Q+   I+GN++        + + +G ++
Sbjct: 399 SSQEEVDITGNSKKEVKNSTSSQESIGELR 428


>tr|A3IMR3|A3IMR3_9CHRO GGDEF family protein OS=Cyanothece sp. CCY
           0110 GN=CY0110_24686 PE=4 SV=1
          Length = 509

 Score = 34.3 bits (77), Expect = 3.2
 Identities = 15/31 (48%), Positives = 20/31 (64%)
 Frame = -2

Query: 268 SVLLCSIDYFQKSNTTVGHYFPQALSCLKNL 176
           S++LC +DYF+K N   GH  PQ   CLK +
Sbjct: 357 SLILCDVDYFKKYNDRYGH--PQGDECLKQV 385


>tr|B7CT69|B7CT69_BURPS Putative uncharacterized protein
           OS=Burkholderia pseudomallei 576 GN=BUC_4237 PE=4 SV=1
          Length = 662

 Score = 33.5 bits (75), Expect = 5.4
 Identities = 18/46 (39%), Positives = 23/46 (50%)
 Frame = +1

Query: 34  KEGATATWRRSWWRGMLSRSRRWCLARGRRSTTHRARSMTPQHKQN 171
           +  ATA  R       ++R+RRW  AR RR TT R R   P  + N
Sbjct: 175 RRAATARQRGRMPPRRVNRARRWAKARKRRGTTARQRGRMPPRRVN 220


>tr|A8EJS8|A8EJS8_BURPS Putative uncharacterized protein
           OS=Burkholderia pseudomallei 406e GN=BURPS406E_P0423
           PE=4 SV=1
          Length = 662

 Score = 33.5 bits (75), Expect = 5.4
 Identities = 18/46 (39%), Positives = 23/46 (50%)
 Frame = +1

Query: 34  KEGATATWRRSWWRGMLSRSRRWCLARGRRSTTHRARSMTPQHKQN 171
           +  ATA  R       ++R+RRW  AR RR TT R R   P  + N
Sbjct: 175 RRAATARQRGRMPPRRVNRARRWAKARKRRGTTARQRGRMPPRRVN 220


>tr|A0YTC6|A0YTC6_9CYAN Sensory transduction histidine kinase
           OS=Lyngbya sp. PCC 8106 GN=L8106_28181 PE=4 SV=1
          Length = 738

 Score = 33.5 bits (75), Expect = 5.4
 Identities = 17/36 (47%), Positives = 20/36 (55%)
 Frame = -2

Query: 319 C*HSSRS*FSPYAAELQSVLLCSIDYFQKSNTTVGH 212
           C     S F+ Y     SV+LC IDYF+K N T GH
Sbjct: 590 CLQKQESLFNRYQQTF-SVILCDIDYFKKINDTFGH 624


>tr|A8XYJ0|A8XYJ0_CAEBR CBR-CLEC-146 protein OS=Caenorhabditis
           briggsae GN=Cbr-clec-146 PE=4 SV=2
          Length = 455

 Score = 33.5 bits (75), Expect = 5.4
 Identities = 21/48 (43%), Positives = 26/48 (54%)
 Frame = +1

Query: 49  ATWRRSWWRGMLSRSRRWCLARGRRSTTHRARSMTPQHKQNSTNFSDK 192
           AT R SW R  ++R + W   R R STT R RS T     +S +F DK
Sbjct: 28  ATRRPSWIRSKVARVQEWAGWRRRESTTPRIRSTTV--APSSRSFVDK 73


>tr|B4B528|B4B528_9CHRO Diguanylate cyclase with PAS/PAC and GAF
           sensors OS=Cyanothece sp. PCC 7822 GN=Cyan7822DRAFT_3024
           PE=4 SV=1
          Length = 944

 Score = 33.1 bits (74), Expect = 7.1
 Identities = 16/31 (51%), Positives = 20/31 (64%)
 Frame = -2

Query: 268 SVLLCSIDYFQKSNTTVGHYFPQALSCLKNL 176
           S+LLC IDYF++ N T GH  P    CLK +
Sbjct: 811 SLLLCDIDYFKQYNDTYGH--PAGDICLKQV 839


>tr|B8LC00|B8LC00_THAPS Predicted protein OS=Thalassiosira
           pseudonana CCMP1335 GN=THAPSDRAFT_8769 PE=4 SV=1
          Length = 762

 Score = 33.1 bits (74), Expect = 7.1
 Identities = 21/74 (28%), Positives = 35/74 (47%)
 Frame = +1

Query: 118 RRSTTHRARSMTPQHKQNSTNFSDKTVLGENNDQQ*CSISGNNQYYTITQIVTLQHMGRI 297
           R+S+   + S TP+ K N  +  DK ++ +NN  Q  SI   +   +  Q  T     +I
Sbjct: 101 RQSSNSHSNSNTPRRKGNPQSPEDKRLVQQNNQYQQQSIKSRSYSSSSHQSQTASPNSKI 160

Query: 298 KICYYASTYPSQSL 339
              Y  S+ P+ +L
Sbjct: 161 NTNYPTSSSPAATL 174


>tr|B5X1L7|B5X1L7_SALSA Splicing factor, arginine/serine-rich 7
           OS=Salmo salar GN=SFRS7 PE=2 SV=1
          Length = 223

 Score = 32.7 bits (73), Expect = 9.3
 Identities = 15/29 (51%), Positives = 20/29 (68%)
 Frame = +1

Query: 85  SRSRRWCLARGRRSTTHRARSMTPQHKQN 171
           SRSR    ARGR ++  R+RS +P HK+N
Sbjct: 194 SRSRSGSRARGRSASRSRSRSRSPSHKRN 222


>tr|Q8QRS9|Q8QRS9_9BETA US31 OS=Panine herpesvirus 2 PE=4 SV=1
          Length = 153

 Score = 32.7 bits (73), Expect = 9.3
 Identities = 14/53 (26%), Positives = 24/53 (45%)
 Frame = +1

Query: 19  GSKGTKEGATATWRRSWWRGMLSRSRRWCLARGRRSTTHRARSMTPQHKQNST 177
           GS  +  G  A  + +WW+ +   +RRW   R R  +  R  S + +    S+
Sbjct: 89  GSSASSSGFVAESKFTWWKRLRHATRRWMFRRNRHRSPSRYSSSSSEDDDGSS 141