BP911621
Clone id YMU001_000007_B11
Library
Length 303
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000007_B11.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence
CTCAAGGAGCCCTCGTCCTTGCTCACCCCAACTTTCTCCACCTCTGAGTTCTCGCTTCTC
GAAGAGTCCATCGACGTAATCTGTTTTTTATATAATGAGCTATCTTCCCCTCCTAGTCCA
AATCTCGCACCTTCCAAATGTGATGCTTCCATGACACTCCCTTGGTGGCTCTCGTTGTGT
ACTTGAGAGGACTCTTCACCAGAAGAATTCTCAGATTCACCATCCTTTGAGCTACTCAAC
TGTGCAGCTTCTTCACTCTCAGAGCTCCCTGATATCGAAGAAACAGCTGTCATAACCTCG
TCC
■■Homology search results ■■ -
sp_hit_id Q172G3
Definition sp|Q172G3|MED1_AEDAE Mediator of RNA polymerase II transcription subunit 1 OS=Aedes aegypti
Align length 63
Score (bit) 31.6
E-value 1.3
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP911621|Adiantum capillus-veneris mRNA, clone:
YMU001_000007_B11.
(303 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q172G3|MED1_AEDAE Mediator of RNA polymerase II transcription... 32 1.3

>sp|Q172G3|MED1_AEDAE Mediator of RNA polymerase II transcription
subunit 1 OS=Aedes aegypti GN=AAEL007402 PE=3 SV=1
Length = 1760

Score = 31.6 bits (70), Expect = 1.3
Identities = 25/63 (39%), Positives = 31/63 (49%), Gaps = 4/63 (6%)
Frame = -2

Query: 182 VHNES--HQGSVMEAS--HLEGARFGLGGEDSSLYKKQITSMDSSRSENSEVEKVGVSKD 15
VH+ S HQGS +S H+ G G GG+ S K TS S S+N G K+
Sbjct: 965 VHHSSPKHQGSYGTSSPKHISGGSSG-GGKPSMSALKSATSSGSPSSKNGSSGIGGSGKE 1023

Query: 14 EGS 6
EGS
Sbjct: 1024 EGS 1026


tr_hit_id A9T912
Definition tr|A9T912|A9T912_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
Align length 49
Score (bit) 33.9
E-value 4.1
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP911621|Adiantum capillus-veneris mRNA, clone:
YMU001_000007_B11.
(303 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|A9T912|A9T912_PHYPA Predicted protein OS=Physcomitrella paten... 34 4.1
tr|Q30T63|Q30T63_SULDN Putative uncharacterized protein OS=Sulfu... 33 9.1
tr|A7NMN0|A7NMN0_ROSCS Adenylate/guanylate cyclase with TPR repe... 33 9.1

>tr|A9T912|A9T912_PHYPA Predicted protein OS=Physcomitrella patens
subsp. patens GN=PHYPADRAFT_168719 PE=4 SV=1
Length = 610

Score = 33.9 bits (76), Expect = 4.1
Identities = 19/49 (38%), Positives = 27/49 (55%), Gaps = 4/49 (8%)
Frame = -2

Query: 143 SHLEGAR----FGLGGEDSSLYKKQITSMDSSRSENSEVEKVGVSKDEG 9
+HLEGAR F +G E +S + S+ SRS N E+ + +S D G
Sbjct: 134 AHLEGARSTRLFAVGNETASKSAADVQSLSQSRSFNLELGSLNMSLDRG 182


>tr|Q30T63|Q30T63_SULDN Putative uncharacterized protein
OS=Sulfurimonas denitrificans (strain ATCC 33889 / DSM
1251) GN=Suden_0539 PE=4 SV=1
Length = 359

Score = 32.7 bits (73), Expect = 9.1
Identities = 16/61 (26%), Positives = 31/61 (50%)
Frame = -3

Query: 256 VKKLHS*VAQRMVNLRILLVKSPLKYTTRATKGVSWKHHIWKVRDLD*EGKIAHYIKNRL 77
+KK + + +V LR+ L+++P + W+HHI + +D G+ +YI L
Sbjct: 86 MKKFYEFYSIDLVQLRVGLIENPQNQLEDILFSIPWRHHIEILNKVDSIGEAVYYIDQTL 145

Query: 76 R 74
+
Sbjct: 146 Q 146


>tr|A7NMN0|A7NMN0_ROSCS Adenylate/guanylate cyclase with TPR repeats
OS=Roseiflexus castenholzii (strain DSM 13941 / HLO8)
GN=Rcas_2730 PE=4 SV=1
Length = 1429

Score = 32.7 bits (73), Expect = 9.1
Identities = 17/50 (34%), Positives = 26/50 (52%)
Frame = -3

Query: 187 LKYTTRATKGVSWKHHIWKVRDLD*EGKIAHYIKNRLRRWTLREARTQRW 38
L++T+ + +HH+ VR + IA Y+ R+ RW LRE R W
Sbjct: 36 LRHTSGVVDIPAVRHHLAAVRTV-----IATYLPRRVARWALRERRAPPW 80