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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP911623
Clone id YMU001_000007_C02
Library
Length 568
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000007_C02.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
AACTCTTCAAGCACTTGTGTGTGTGGGTTCAGAAATGCCCATGCACTTCTAGAGTTCTTT
CACTTCTTCTACTTTTTCAGTGTCTTTGAAACATGAAACACACACATGAAGGGCTCCTCC
TCAATTGTCATGTGATGATAGTGGATGTTGGTGTGACTTCATGCATCTTATCTTTTCCTT
TCTTTGCGTCCTCGATCCACTTTTCAACTTTATCAACCTTCTCTTGATTTTGAATAGGTG
CTATGTCCATGAAGAGGTTGTTCGTGCTTCCTGCTCTTCCTCTTCAAGTAGAGTTTCCAC
GTGTGCTTCTTAATGCTTTCGGACTCCTTTATCATTGAGTGCTGATTTTCTCCCTCCTTT
GCAGGGGTATTTTACAAGCTGCGAGTTCTCCCTTAGTGCTTCGATCAATGCATCCTTTTC
ATTCATGCGTTCTTCCATTTTTGATTTCTAGGATTCAAAAGCAGCAAGTGCATCCTCTAA
TCTTTTTTGCATCACACATTCCATTACATTCACTTCTGCTCTCACTCCTTTATCATTGAG
TGTAGATTTTCTCCCTCCTCTGCATGGG
■■Homology search results ■■ -
sp_hit_id P90900
Definition sp|P90900|IFA4_CAEEL Intermediate filament protein ifa-4 OS=Caenorhabditis elegans
Align length 60
Score (bit) 33.5
E-value 0.76
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP911623|Adiantum capillus-veneris mRNA, clone:
YMU001_000007_C02.
         (568 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P90900|IFA4_CAEEL Intermediate filament protein ifa-4 OS=Caen...    33   0.76 
sp|Q21065|IFA3_CAEEL Intermediate filament protein ifa-3 OS=Caen...    32   1.7  
sp|Q9BMQ6|MYSP_OPIFE Paramyosin (Fragment) OS=Opisthorchis felin...    32   2.2  
sp|Q02171|MYSP_ONCVO Paramyosin OS=Onchocerca volvulus PE=2 SV=1       32   2.2  
sp|P13392|MYSP_DIRIM Paramyosin (Fragment) OS=Dirofilaria immiti...    32   2.2  
sp|P10567|MYSP_CAEEL Paramyosin OS=Caenorhabditis elegans GN=unc...    32   2.2  
sp|Q01202|MYSP_BRUMA Paramyosin OS=Brugia malayi PE=2 SV=2             32   2.2  
sp|B0WYY2|MOEH_CULQU Moesin/ezrin/radixin homolog 1 OS=Culex qui...    32   2.9  
sp|O96064|MYSP_MYTGA Paramyosin OS=Mytilus galloprovincialis PE=...    31   4.9  
sp|P06198|MYSP_SCHMA Paramyosin OS=Schistosoma mansoni PE=2 SV=2       30   6.4  
sp|Q05870|MYSP_SCHJA Paramyosin OS=Schistosoma japonicum PE=2 SV=2     30   6.4  
sp|Q96DN2|VWCE_HUMAN von Willebrand factor C and EGF domain-cont...    30   8.4  

>sp|P90900|IFA4_CAEEL Intermediate filament protein ifa-4
           OS=Caenorhabditis elegans GN=ifa-4 PE=1 SV=1
          Length = 575

 Score = 33.5 bits (75), Expect = 0.76
 Identities = 17/60 (28%), Positives = 34/60 (56%), Gaps = 1/60 (1%)
 Frame = -2

Query: 549 KSTLND-KGVRAEVNVMECVMQKRLEDALAAFES*KSKMEERMNEKDALIEALRENSQLV 373
           ++TL D +G  A++     +++K++ED     E      E+ +N+KD  I  LR+ S+++
Sbjct: 332 RTTLGDMRGKMADLEGRNLLLEKQIEDLNYQMEEDMRSYEQSLNDKDTSINKLRDESKIL 391


>sp|Q21065|IFA3_CAEEL Intermediate filament protein ifa-3
           OS=Caenorhabditis elegans GN=ifa-3 PE=1 SV=1
          Length = 581

 Score = 32.3 bits (72), Expect = 1.7
 Identities = 17/51 (33%), Positives = 26/51 (50%)
 Frame = -2

Query: 531 KGVRAEVNVMECVMQKRLEDALAAFES*KSKMEERMNEKDALIEALRENSQ 379
           K   AE+     +++K+LED     E  +   E  +N+KDA +  LRE  Q
Sbjct: 340 KSKHAELAARNGLLEKQLEDLNYQLEDDQRSYEAALNDKDAQVRKLREECQ 390


>sp|Q9BMQ6|MYSP_OPIFE Paramyosin (Fragment) OS=Opisthorchis felineus
           PE=2 SV=1
          Length = 638

 Score = 32.0 bits (71), Expect = 2.2
 Identities = 14/37 (37%), Positives = 26/37 (70%)
 Frame = -2

Query: 492 MQKRLEDALAAFES*KSKMEERMNEKDALIEALRENS 382
           + ++ ++A AA    KS+ME+R+ EKD  +E LR+++
Sbjct: 451 VDQKYQNAQAALNHLKSEMEQRLREKDEELETLRKST 487


>sp|Q02171|MYSP_ONCVO Paramyosin OS=Onchocerca volvulus PE=2 SV=1
          Length = 879

 Score = 32.0 bits (71), Expect = 2.2
 Identities = 15/37 (40%), Positives = 24/37 (64%)
 Frame = -2

Query: 489 QKRLEDALAAFES*KSKMEERMNEKDALIEALRENSQ 379
           + R + ALA  +  + +ME R+ EK+  +EALR+N Q
Sbjct: 487 ENRAQRALAELQQLRIEMERRLQEKEEEMEALRKNMQ 523


>sp|P13392|MYSP_DIRIM Paramyosin (Fragment) OS=Dirofilaria immitis
           PE=2 SV=2
          Length = 848

 Score = 32.0 bits (71), Expect = 2.2
 Identities = 15/37 (40%), Positives = 24/37 (64%)
 Frame = -2

Query: 489 QKRLEDALAAFES*KSKMEERMNEKDALIEALRENSQ 379
           + R + ALA  +  + +ME R+ EK+  +EALR+N Q
Sbjct: 460 ENRAQRALAELQQLRIEMERRLQEKEEEMEALRKNMQ 496


>sp|P10567|MYSP_CAEEL Paramyosin OS=Caenorhabditis elegans GN=unc-15
           PE=1 SV=1
          Length = 882

 Score = 32.0 bits (71), Expect = 2.2
 Identities = 15/37 (40%), Positives = 25/37 (67%)
 Frame = -2

Query: 489 QKRLEDALAAFES*KSKMEERMNEKDALIEALRENSQ 379
           + R + ALA  ++ + +ME R+ EK+  +EALR+N Q
Sbjct: 498 ENRAQRALAELQALRIEMERRLQEKEEEMEALRKNLQ 534


>sp|Q01202|MYSP_BRUMA Paramyosin OS=Brugia malayi PE=2 SV=2
          Length = 880

 Score = 32.0 bits (71), Expect = 2.2
 Identities = 15/37 (40%), Positives = 24/37 (64%)
 Frame = -2

Query: 489 QKRLEDALAAFES*KSKMEERMNEKDALIEALRENSQ 379
           + R + ALA  +  + +ME R+ EK+  +EALR+N Q
Sbjct: 487 ENRAQRALAELQQLRIEMERRLQEKEEEMEALRKNMQ 523


>sp|B0WYY2|MOEH_CULQU Moesin/ezrin/radixin homolog 1 OS=Culex
           quinquefasciatus GN=Moe PE=3 SV=1
          Length = 572

 Score = 31.6 bits (70), Expect = 2.9
 Identities = 17/60 (28%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
 Frame = -2

Query: 552 RKSTLNDKGVRAEVNVMECV-MQKRLEDALAAFES*KSKMEERMNEKDALIEALRENSQL 376
           R   + ++  R++ N++E   M +RLE+ L   ++ K  +E+R NE   +I  L E   +
Sbjct: 339 RIRNMQEEMERSQANLIEAQDMIRRLEEQLKQLQAAKDDLEQRQNELQVMITRLEETKNM 398


>sp|O96064|MYSP_MYTGA Paramyosin OS=Mytilus galloprovincialis PE=2
           SV=1
          Length = 864

 Score = 30.8 bits (68), Expect = 4.9
 Identities = 14/36 (38%), Positives = 25/36 (69%)
 Frame = -2

Query: 489 QKRLEDALAAFES*KSKMEERMNEKDALIEALRENS 382
           + +L  A AA    +S+ME+R+ EKD  I+++R++S
Sbjct: 480 EAKLAAAQAALNQLRSEMEQRLREKDEEIDSIRKSS 515


>sp|P06198|MYSP_SCHMA Paramyosin OS=Schistosoma mansoni PE=2 SV=2
          Length = 866

 Score = 30.4 bits (67), Expect = 6.4
 Identities = 13/37 (35%), Positives = 26/37 (70%)
 Frame = -2

Query: 492 MQKRLEDALAAFES*KSKMEERMNEKDALIEALRENS 382
           M ++ + + AA    KS+ME+R+ E+D  +E+LR+++
Sbjct: 470 MDQKYQASQAALNHLKSEMEQRLRERDEELESLRKST 506
tr_hit_id A7VAQ9
Definition tr|A7VAQ9|A7VAQ9_BACUN Putative uncharacterized protein OS=Bacteroides uniformis ATCC 8492
Align length 40
Score (bit) 33.9
E-value 6.4
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP911623|Adiantum capillus-veneris mRNA, clone:
YMU001_000007_C02.
         (568 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A7VAQ9|A7VAQ9_BACUN Putative uncharacterized protein OS=Bacte...    34   6.4  

>tr|A7VAQ9|A7VAQ9_BACUN Putative uncharacterized protein
           OS=Bacteroides uniformis ATCC 8492 GN=BACUNI_04691 PE=4
           SV=1
          Length = 406

 Score = 33.9 bits (76), Expect = 6.4
 Identities = 16/40 (40%), Positives = 26/40 (65%), Gaps = 2/40 (5%)
 Frame = +3

Query: 378 AASSPLVLRSMHPFHSCVLPFLISRIQKQQV--HPLIFFA 491
           A S   +L   HPFH   LPF++SR++K+++  + L+ FA
Sbjct: 325 AVSPNYILFVFHPFHLFCLPFMLSRVRKREISRYMLVNFA 364