BP911624
Clone id YMU001_000007_C03
Library
Length 471
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000007_C03.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence
CATACATATAGACATACACGGGTGCGTAGGGAGAGATATACATGCATAGGTATACGTGCA
AGAAAGGGAAAGAAATGAATACAACAAAGGTTTAAGTGAGTCATCTAGCTCTGAAAAAGC
TCGTGATCACAATGTTTTGCAGCATGGCTTGCACTAGTAGGTTTGGCCTCAGCAATGCAT
CAGCTTGCTCAGCCTTGAAGCAAATAATCAAAGCACAAAACATTGTGATTAGCCAGCAGG
TATTTTACGTGGCATTGGAGGGAATGATATTTAAAATAATTCCCGCTGCAAACTAAATCG
AGAGGCAACCCATAAATTGGGTAGCGAACAGCATAATTGCCGCTAGAAGCGTAGAGTGAA
AAGACCAGCTGAGATCCAAAATTGAGCACGCGTATGCTGTAGATCAACAAACAAGCTGGA
AGGCAGAGCAGTCCAAGTGAGGGAGTGAGAATAATACCTGCATTTGAAAGC
■■Homology search results ■■ -
sp_hit_id O42583
Definition sp|O42583|PRPH2_XENLA Peripherin-2 OS=Xenopus laevis
Align length 31
Score (bit) 30.8
E-value 3.1
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP911624|Adiantum capillus-veneris mRNA, clone:
YMU001_000007_C03.
(471 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|O42583|PRPH2_XENLA Peripherin-2 OS=Xenopus laevis GN=prph2 PE... 31 3.1
sp|Q10936|SRA34_CAEEL Serpentine receptor class alpha-34 OS=Caen... 30 7.1

>sp|O42583|PRPH2_XENLA Peripherin-2 OS=Xenopus laevis GN=prph2 PE=2
SV=1
Length = 346

Score = 30.8 bits (68), Expect = 3.1
Identities = 11/31 (35%), Positives = 20/31 (64%)
Frame = +3

Query: 312 INWVANSIIAARSVE*KDQLRSKIEHAYAVD 404
+ WV+N + RS E KD+++S ++ Y +D
Sbjct: 177 LQWVSNRYLGGRSKEVKDRIQSNVDGKYLID 207


>sp|Q10936|SRA34_CAEEL Serpentine receptor class alpha-34
OS=Caenorhabditis elegans GN=sra-34 PE=3 SV=3
Length = 355

Score = 29.6 bits (65), Expect = 7.1
Identities = 16/32 (50%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
Frame = -1

Query: 120 AFSELDDSLKPLLYSFLSLSC-TYTYACISLP 28
A +L D + PLL + + L C TYTYAC+ LP
Sbjct: 261 AVIKLKDVIGPLLVTNVVLWCYTYTYACMFLP 292


tr_hit_id B3R0N0
Definition tr|B3R0N0|B3R0N0_APPPP Putative uncharacterized protein OS=Apple proliferation phytoplasma
Align length 139
Score (bit) 33.5
E-value 5.5
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP911624|Adiantum capillus-veneris mRNA, clone:
YMU001_000007_C03.
(471 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|B3R0N0|B3R0N0_APPPP Putative uncharacterized protein OS=Apple... 33 5.5
tr|Q28G92|Q28G92_XENTR Novel protein OS=Xenopus tropicalis GN=TG... 33 7.1
tr|Q9GMN8|Q9GMN8_MACFA Putative uncharacterized protein OS=Macac... 33 9.3

>tr|B3R0N0|B3R0N0_APPPP Putative uncharacterized protein OS=Apple
proliferation phytoplasma GN=ATP_00427 PE=4 SV=1
Length = 305

Score = 33.5 bits (75), Expect = 5.5
Identities = 30/139 (21%), Positives = 60/139 (43%), Gaps = 5/139 (3%)
Frame = -3

Query: 427 SAFQLVC*STAYACSILDLSWSFHSTLLAAIMLFATQFMGCLSI*FAAGIILNIIPSNAT 248
SA +C + C I L ++STL+ ++L+ +F+ F + + + S
Sbjct: 73 SAIITICFLINFKCEITSLFSFWYSTLIIIVLLYFIRFL------FYCFVDVYVFAS--- 123

Query: 247 *NTCWLITMFCALI-----ICFKAEQADALLRPNLLVQAMLQNIVITSFFRAR*LT*TFV 83
C+L ++F A++ CF A+ L V + L N ++ F +
Sbjct: 124 -RICFLFSIFLAVVWGVYFACFYF--AEHKLLTTTFVSSPLSNTILRYF---------LI 171

Query: 82 VFISFPFLHVYLCMYISPY 26
+F+ PFL ++ +++ Y
Sbjct: 172 LFVLLPFLISFIVLFLISY 190


>tr|Q28G92|Q28G92_XENTR Novel protein OS=Xenopus tropicalis
GN=TGas063n01.1-001 PE=4 SV=1
Length = 77

Score = 33.1 bits (74), Expect = 7.1
Identities = 9/23 (39%), Positives = 18/23 (78%)
Frame = -3

Query: 70 FPFLHVYLCMYISPYAPVYVYMY 2
+ ++++Y+C+YI Y +Y+YMY
Sbjct: 32 YVYMYIYICIYICMYVYIYIYMY 54


>tr|Q9GMN8|Q9GMN8_MACFA Putative uncharacterized protein OS=Macaca
fascicularis PE=4 SV=1
Length = 50

Score = 32.7 bits (73), Expect = 9.3
Identities = 10/20 (50%), Positives = 16/20 (80%)
Frame = -3

Query: 61 LHVYLCMYISPYAPVYVYMY 2
++VY+C+YI PY Y+YM+
Sbjct: 23 IYVYICVYIDPYKHTYIYMH 42