BP911625 |
Clone id |
YMU001_000007_C04 |
Library |
YMU01 |
Length |
531 |
Definition |
Adiantum capillus-veneris mRNA. clone: YMU001_000007_C04. |
Accession |
BP911625 |
Tissue type |
prothallium |
Developmental stage |
- |
Contig ID |
- |
Sequence |
GTCCAATTCAAGGTATGTGGGCTATCTGGCTAGATGAAGCAAGCTCGTCAGAGGGAAGCT GAGTTTTGGAGCTGGATAAGTTTTGACTTGAGCCGTTGATAAGTTGGGTTAGCTGATGAA TTGTCTCCATATCCTATTTCTTTGTTTCTTACACTATATCTTGTTGGCGCGTGTTGTATT ATGGAATCCATATCTTGGTCTGGCCAATATTTCGATAGTATGTTTCGACTCTAAGCTGCT CTGATAATTATTGATAAGGAATCTGGTACTTCTCGTGGGTATGGATTTATTACATTCACC AATCCCCGAGCTGCAACAAAGGCAATTAACAACATGAATGGTGGGTCCATTGAAGGTAGG ACGATTAGAGTAAATGAAGCAACTGCAAAAAGTGGGAACCGTTTTGGGCGTGATAATGGT CGATTTGCTGGAGTAAGGGACAGAGGTAGAGGCAGAGATAACCGTGATTTTCGATTCAGG GATCGAGGCGGGAATGCGCGTCAATTTTCACCACCAAGGAAGACAGATTCG |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q99070 |
Definition |
sp|Q99070|GRP2_SORBI Glycine-rich RNA-binding protein 2 OS=Sorghum bicolor |
Align length |
84 |
Score (bit) |
60.5 |
E-value |
5.0e-09 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= BP911625|Adiantum capillus-veneris mRNA, clone: YMU001_000007_C04. (531 letters)
Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
sp|Q99070|GRP2_SORBI Glycine-rich RNA-binding protein 2 OS=Sorgh... 60 5e-09 sp|Q05966|GRP10_BRANA Glycine-rich RNA-binding protein 10 OS=Bra... 59 1e-08 sp|P10979|GRPA_MAIZE Glycine-rich RNA-binding, abscisic acid-ind... 59 1e-08 sp|Q43349|ROC2_ARATH 29 kDa ribonucleoprotein, chloroplastic OS=... 59 2e-08 sp|O89086|RBM3_MOUSE Putative RNA-binding protein 3 OS=Mus muscu... 58 2e-08 sp|P98179|RBM3_HUMAN Putative RNA-binding protein 3 OS=Homo sapi... 57 4e-08 sp|Q03251|GRP8_ARATH Glycine-rich RNA-binding protein 8 OS=Arabi... 57 6e-08 sp|Q99069|GRP1_SORBI Glycine-rich RNA-binding protein 1 (Fragmen... 57 6e-08 sp|Q03878|GRP1_DAUCA Glycine-rich RNA-binding protein OS=Daucus ... 57 6e-08 sp|O93235|CIRBP_XENLA Cold-inducible RNA-binding protein OS=Xeno... 57 6e-08 sp|P19682|ROC3_NICSY 28 kDa ribonucleoprotein, chloroplastic OS=... 57 7e-08 sp|Q03250|GRP7_ARATH Glycine-rich RNA-binding protein 7 OS=Arabi... 56 9e-08 sp|P49311|GRP2_SINAL Glycine-rich RNA-binding protein GRP2A OS=S... 56 9e-08 sp|P19683|ROC4_NICSY 31 kDa ribonucleoprotein, chloroplastic OS=... 56 1e-07 sp|Q9SVM8|GRP2_ARATH Glycine-rich RNA-binding protein 2, mitocho... 55 2e-07 sp|P49310|GRP1_SINAL Glycine-rich RNA-binding protein GRP1A OS=S... 55 2e-07 sp|P60825|CIRBP_RAT Cold-inducible RNA-binding protein OS=Rattus... 54 4e-07 sp|Q5RF83|CIRBP_PONAB Cold-inducible RNA-binding protein OS=Pong... 54 4e-07 sp|P60824|CIRBP_MOUSE Cold-inducible RNA-binding protein OS=Mus ... 54 4e-07 sp|Q14011|CIRBP_HUMAN Cold-inducible RNA-binding protein OS=Homo... 54 4e-07 sp|P60826|CIRBP_CRIGR Cold-inducible RNA-binding protein OS=Cric... 54 4e-07 sp|Q08937|ROC2_NICSY 29 kDa ribonucleoprotein B, chloroplastic O... 53 8e-07 sp|Q9ZUU4|ROC1_ARATH Putative ribonucleoprotein At2g37220, chlor... 53 8e-07 sp|P49314|ROC2_NICPL 31 kDa ribonucleoprotein, chloroplastic OS=... 53 1e-06 sp|P19684|ROC5_NICSY 33 kDa ribonucleoprotein, chloroplastic OS=... 52 1e-06 sp|Q29RT0|HNRPG_BOVIN Heterogeneous nuclear ribonucleoprotein G ... 52 1e-06 sp|Q5RC80|RBM39_PONAB RNA-binding protein 39 OS=Pongo abelii GN=... 52 2e-06 sp|Q8VH51|RBM39_MOUSE RNA-binding protein 39 OS=Mus musculus GN=... 52 2e-06 sp|Q14498|RBM39_HUMAN RNA-binding protein 39 OS=Homo sapiens GN=... 52 2e-06 sp|A5A6M3|HNRPG_PANTR Heterogeneous nuclear ribonucleoprotein G ... 52 2e-06
>sp|Q99070|GRP2_SORBI Glycine-rich RNA-binding protein 2 OS=Sorghum bicolor GN=GRP2 PE=2 SV=1 Length = 168
Score = 60.5 bits (145), Expect = 5e-09 Identities = 29/84 (34%), Positives = 51/84 (60%), Gaps = 6/84 (7%) Frame = +1
Query: 175 CIMESISWSG------QYFDSMFRL*AALIIIDKESGTSRGYGFITFTNPRAATKAINNM 336 C + ++W+ Q F + ++ + +I D+E+G SRG+GF+TF++ ++ AI NM Sbjct: 10 CFVGGLAWATNNETLEQAFANFGQVIDSKVITDRETGRSRGFGFVTFSSEQSMLDAIENM 69
Query: 337 NGGSIEGRTIRVNEATAKSGNRFG 408 NG ++GR I VN+A ++ G G Sbjct: 70 NGKELDGRNITVNQAQSRGGGGGG 93
>sp|Q05966|GRP10_BRANA Glycine-rich RNA-binding protein 10 OS=Brassica napus GN=GRP10 PE=2 SV=1 Length = 169
Score = 59.3 bits (142), Expect = 1e-08 Identities = 27/55 (49%), Positives = 39/55 (70%) Frame = +1
Query: 244 IIIDKESGTSRGYGFITFTNPRAATKAINNMNGGSIEGRTIRVNEATAKSGNRFG 408 II D+E+G SRG+GF+TF + ++ AI+ MNG ++GRTI VNEA ++ G G Sbjct: 37 IINDRETGRSRGFGFVTFKDEKSMKDAIDEMNGKELDGRTITVNEAQSRGGGGGG 91
>sp|P10979|GRPA_MAIZE Glycine-rich RNA-binding, abscisic acid-inducible protein OS=Zea mays GN=RAB15 PE=1 SV=1 Length = 157
Score = 58.9 bits (141), Expect = 1e-08 Identities = 29/84 (34%), Positives = 48/84 (57%), Gaps = 6/84 (7%) Frame = +1
Query: 175 CIMESISWSGQY------FDSMFRL*AALIIIDKESGTSRGYGFITFTNPRAATKAINNM 336 C + ++W+ F S + + +I D+E+G SRG+GF+TF++ + AI NM Sbjct: 10 CFVGGLAWATSNESLENAFASYGEILDSKVITDRETGRSRGFGFVTFSSENSMLDAIENM 69
Query: 337 NGGSIEGRTIRVNEATAKSGNRFG 408 NG ++GR I VN+A ++ G G Sbjct: 70 NGKELDGRNITVNQAQSRGGGGGG 93
>sp|Q43349|ROC2_ARATH 29 kDa ribonucleoprotein, chloroplastic OS=Arabidopsis thaliana GN=RBP29 PE=1 SV=2 Length = 342
Score = 58.5 bits (140), Expect = 2e-08 Identities = 25/60 (41%), Positives = 43/60 (71%) Frame = +1
Query: 211 FDSMFRL*AALIIIDKESGTSRGYGFITFTNPRAATKAINNMNGGSIEGRTIRVNEATAK 390 F+ ++ A +I D++SG S+G+GF+T ++ + KAIN++NG ++GR IRV+EA A+ Sbjct: 277 FNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINSLNGADLDGRQIRVSEAEAR 336
Score = 44.7 bits (104), Expect = 3e-04 Identities = 22/57 (38%), Positives = 30/57 (52%) Frame = +1
Query: 205 QYFDSMFRL*AALIIIDKESGTSRGYGFITFTNPRAATKAINNMNGGSIEGRTIRVN 375 Q F+S + +I DK +G SRG+GF+T + A NG EGR +RVN Sbjct: 117 QLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQQFNGYEFEGRPLRVN 173
>sp|O89086|RBM3_MOUSE Putative RNA-binding protein 3 OS=Mus musculus GN=Rbm3 PE=2 SV=1 Length = 153
Score = 58.2 bits (139), Expect = 2e-08 Identities = 30/68 (44%), Positives = 45/68 (66%), Gaps = 1/68 (1%) Frame = +1
Query: 208 YFDSMFRL*AALIIIDKESGTSRGYGFITFTNPRAATKAINNMNGGSIEGRTIRVNEA-T 384 +F S + +++ D+E+ SRG+GFITFTNP A+ A+ MNG S++GR IRV+ A Sbjct: 25 HFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDAMRAMNGESLDGRQIRVDHAGK 84
Query: 385 AKSGNRFG 408 + G+R G Sbjct: 85 SARGSRGG 92
>sp|P98179|RBM3_HUMAN Putative RNA-binding protein 3 OS=Homo sapiens GN=RBM3 PE=1 SV=1 Length = 157
Score = 57.4 bits (137), Expect = 4e-08 Identities = 27/58 (46%), Positives = 40/58 (68%) Frame = +1
Query: 208 YFDSMFRL*AALIIIDKESGTSRGYGFITFTNPRAATKAINNMNGGSIEGRTIRVNEA 381 +F S + +++ D+E+ SRG+GFITFTNP A+ A+ MNG S++GR IRV+ A Sbjct: 25 HFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASVAMRAMNGESLDGRQIRVDHA 82
>sp|Q03251|GRP8_ARATH Glycine-rich RNA-binding protein 8 OS=Arabidopsis thaliana GN=GRP8 PE=1 SV=1 Length = 169
Score = 57.0 bits (136), Expect = 6e-08 Identities = 27/55 (49%), Positives = 36/55 (65%) Frame = +1
Query: 244 IIIDKESGTSRGYGFITFTNPRAATKAINNMNGGSIEGRTIRVNEATAKSGNRFG 408 II D+ESG SRG+GF+TF + +A AI MNG ++GR I VNEA ++ G Sbjct: 37 IINDRESGRSRGFGFVTFKDEKAMRDAIEEMNGKELDGRVITVNEAQSRGSGGGG 91
>sp|Q99069|GRP1_SORBI Glycine-rich RNA-binding protein 1 (Fragment) OS=Sorghum bicolor GN=GRP1 PE=2 SV=1 Length = 142
Score = 57.0 bits (136), Expect = 6e-08 Identities = 26/55 (47%), Positives = 36/55 (65%) Frame = +1
Query: 244 IIIDKESGTSRGYGFITFTNPRAATKAINNMNGGSIEGRTIRVNEATAKSGNRFG 408 II+D+E+ SRG+GF+TF+ A AI MNG ++GR I VNEA ++ G G Sbjct: 18 IILDRETQRSRGFGFVTFSTEEAMRSAIEGMNGKELDGRNITVNEAQSRGGRGGG 72
>sp|Q03878|GRP1_DAUCA Glycine-rich RNA-binding protein OS=Daucus carota PE=2 SV=1 Length = 157
Score = 57.0 bits (136), Expect = 6e-08 Identities = 32/86 (37%), Positives = 49/86 (56%), Gaps = 7/86 (8%) Frame = +1
Query: 175 CIMESISWSG------QYFDSMFRL*AALIIIDKESGTSRGYGFITFTNPRAATKAINNM 336 C + ++W+ Q F + + II D+E+G SRG+GF+TF + ++ AI M Sbjct: 8 CFVGGLAWATNDESLEQAFSQFGDITDSKIINDRETGRSRGFGFVTFKDEKSMRDAIEGM 67
Query: 337 NGGSIEGRTIRVNEATAK-SGNRFGR 411 NG ++GR I VNEA ++ SG GR Sbjct: 68 NGQELDGRNITVNEAQSRGSGGGGGR 93
>sp|O93235|CIRBP_XENLA Cold-inducible RNA-binding protein OS=Xenopus laevis GN=cirbp PE=2 SV=1 Length = 163
Score = 57.0 bits (136), Expect = 6e-08 Identities = 29/68 (42%), Positives = 42/68 (61%) Frame = +1
Query: 205 QYFDSMFRL*AALIIIDKESGTSRGYGFITFTNPRAATKAINNMNGGSIEGRTIRVNEAT 384 Q F R+ +++ D+E+ SRG+GF+TF N A A+ MNG S++GR IRV++A Sbjct: 23 QAFTKYGRISEVVVVKDRETKRSRGFGFVTFENVDDAKDAMMAMNGKSVDGRQIRVDQAG 82
Query: 385 AKSGNRFG 408 SG R G Sbjct: 83 KSSGERRG 90
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A9T824 |
Definition |
tr|A9T824|A9T824_PHYPA Predicted protein (Fragment) OS=Physcomitrella patens subsp. patens |
Align length |
45 |
Score (bit) |
72.4 |
E-value |
1.0e-11 |
Report |
|