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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP911626
Clone id YMU001_000007_C06
Library
Length 524
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000007_C06.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
GCCAGATTGTGAAGTTGATGGAAGCGAGGCGACTCCAAGTCGCCGATATATGGTAGTGTT
TACTGTTACATAATCTTATACAAGGCGGCGGTCTCTTCTCTCAAAGACCGCCCATCCCTT
CTTTTTATTTATCAATGAAGGAGGGCACTAATTTACTGAAGTGTACATTGTCGCGGTTTA
TATGATTTCGCCACCGGTGTCTTTTTTTCCTACCACTCATACAAGTTACAAGGACATTCA
AGCCAAGTCATGTACATGGGGCAGAGAAGGCAGGCCCCCTTATGAGGGAAAGGGAGGGCC
TGCAAAGATGCCTACATCATTTTACTACACATAGTGAAAGAGAGCAAGCAATATCAAGTG
GAGTTATTAGTTTGTATAGCAAAGGGGAAGCAAAGCTCATTGTCGTTTAGTGAGGAGAGC
GCGAAATAGGGAAGGATTAAGTAATGTGTATAGTCAGATGAAAGCAAAGTTAATTGAGTT
CACAAACTTTTTTGGAGGAGGGTCAAAAAAAAAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id P11353
Definition sp|P11353|HEM6_YEAST Coproporphyrinogen III oxidase OS=Saccharomyces cerevisiae
Align length 49
Score (bit) 30.0
E-value 5.7
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP911626|Adiantum capillus-veneris mRNA, clone:
YMU001_000007_C06.
         (486 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P11353|HEM6_YEAST Coproporphyrinogen III oxidase OS=Saccharom...    30   5.7  
sp|Q5RE09|DC1L2_PONAB Cytoplasmic dynein 1 light intermediate ch...    30   5.7  
sp|P63639|MURI_STAAW Glutamate racemase OS=Staphylococcus aureus...    30   7.5  
sp|A8Z1T2|MURI_STAAT Glutamate racemase OS=Staphylococcus aureus...    30   7.5  
sp|Q6GA64|MURI_STAAS Glutamate racemase OS=Staphylococcus aureus...    30   7.5  
sp|Q6GHT5|MURI_STAAR Glutamate racemase OS=Staphylococcus aureus...    30   7.5  
sp|P63638|MURI_STAAN Glutamate racemase OS=Staphylococcus aureus...    30   7.5  
sp|P63637|MURI_STAAM Glutamate racemase OS=Staphylococcus aureus...    30   7.5  
sp|A6QG53|MURI_STAAE Glutamate racemase OS=Staphylococcus aureus...    30   7.5  
sp|Q5HGT3|MURI_STAAC Glutamate racemase OS=Staphylococcus aureus...    30   7.5  
sp|A5IS36|MURI_STAA9 Glutamate racemase OS=Staphylococcus aureus...    30   7.5  
sp|Q2FZC6|MURI_STAA8 Glutamate racemase OS=Staphylococcus aureus...    30   7.5  
sp|Q2FHT1|MURI_STAA3 Glutamate racemase OS=Staphylococcus aureus...    30   7.5  
sp|A6U0W7|MURI_STAA2 Glutamate racemase OS=Staphylococcus aureus...    30   7.5  
sp|A7X179|MURI_STAA1 Glutamate racemase OS=Staphylococcus aureus...    30   7.5  
sp|P16912|KDC2_DROME Protein kinase DC2 OS=Drosophila melanogast...    30   7.5  
sp|Q2YXC5|MURI_STAAB Glutamate racemase OS=Staphylococcus aureus...    29   9.8  

>sp|P11353|HEM6_YEAST Coproporphyrinogen III oxidase
           OS=Saccharomyces cerevisiae GN=HEM13 PE=1 SV=2
          Length = 328

 Score = 30.0 bits (66), Expect = 5.7
 Identities = 16/49 (32%), Positives = 24/49 (48%)
 Frame = +2

Query: 182 MISPPVSFFPTTHTSYKDIQAKSCTWGREGRPPYEGKGGPAKMPTSFYY 328
           +I P     PTTH +Y+  +    TW ++G P     GG A +  S+ Y
Sbjct: 119 VIHPVNPHAPTTHLNYRYFE----TWNQDGTPQTWWFGGGADLTPSYLY 163


>sp|Q5RE09|DC1L2_PONAB Cytoplasmic dynein 1 light intermediate chain
           2 OS=Pongo abelii GN=DYNC1LI2 PE=2 SV=1
          Length = 492

 Score = 30.0 bits (66), Expect = 5.7
 Identities = 15/38 (39%), Positives = 21/38 (55%)
 Frame = +2

Query: 209 PTTHTSYKDIQAKSCTWGREGRPPYEGKGGPAKMPTSF 322
           P T T   +  A+    G  G P  +G+GGPA +P+SF
Sbjct: 374 PATPTRASESPAR----GPSGSPRTQGRGGPASVPSSF 407


>sp|P63639|MURI_STAAW Glutamate racemase OS=Staphylococcus aureus
           (strain MW2) GN=murI PE=3 SV=1
          Length = 266

 Score = 29.6 bits (65), Expect = 7.5
 Identities = 27/83 (32%), Positives = 36/83 (43%), Gaps = 2/83 (2%)
 Frame = -3

Query: 403 TMSFASPLLYKLITPLDIACSLSLCVVK*C--RHLCRPSLSLIRGPAFSAPCT*LGLNVL 230
           T+  A  L+   I  L IAC+ +  V      + L  P + +I   A +A  T    NVL
Sbjct: 53  TVEIARKLMEFDIKMLVIACNTATAVALEYLQKTLSIPVIGVIEPGARTAIMTTRNQNVL 112

Query: 229 VTCMSGRKKRHRWRNHINRDNVH 161
           V    G  K   +R HI R N H
Sbjct: 113 VLGTEGTIKSEAYRTHIKRINPH 135


>sp|A8Z1T2|MURI_STAAT Glutamate racemase OS=Staphylococcus aureus
           (strain USA300 / TCH1516) GN=murI PE=3 SV=1
          Length = 266

 Score = 29.6 bits (65), Expect = 7.5
 Identities = 27/83 (32%), Positives = 36/83 (43%), Gaps = 2/83 (2%)
 Frame = -3

Query: 403 TMSFASPLLYKLITPLDIACSLSLCVVK*C--RHLCRPSLSLIRGPAFSAPCT*LGLNVL 230
           T+  A  L+   I  L IAC+ +  V      + L  P + +I   A +A  T    NVL
Sbjct: 53  TVEIARKLMEFDIKMLVIACNTATAVALEYLQKTLSIPVIGVIEPGARTAIMTTRNQNVL 112

Query: 229 VTCMSGRKKRHRWRNHINRDNVH 161
           V    G  K   +R HI R N H
Sbjct: 113 VLGTEGTIKSEAYRTHIKRINPH 135


>sp|Q6GA64|MURI_STAAS Glutamate racemase OS=Staphylococcus aureus
           (strain MSSA476) GN=murI PE=3 SV=1
          Length = 266

 Score = 29.6 bits (65), Expect = 7.5
 Identities = 27/83 (32%), Positives = 36/83 (43%), Gaps = 2/83 (2%)
 Frame = -3

Query: 403 TMSFASPLLYKLITPLDIACSLSLCVVK*C--RHLCRPSLSLIRGPAFSAPCT*LGLNVL 230
           T+  A  L+   I  L IAC+ +  V      + L  P + +I   A +A  T    NVL
Sbjct: 53  TVEIARKLMEFDIKMLVIACNTATAVALEYLQKTLSIPVIGVIEPGARTAIMTTRNQNVL 112

Query: 229 VTCMSGRKKRHRWRNHINRDNVH 161
           V    G  K   +R HI R N H
Sbjct: 113 VLGTEGTIKSEAYRTHIKRINPH 135


>sp|Q6GHT5|MURI_STAAR Glutamate racemase OS=Staphylococcus aureus
           (strain MRSA252) GN=murI PE=1 SV=1
          Length = 266

 Score = 29.6 bits (65), Expect = 7.5
 Identities = 27/83 (32%), Positives = 36/83 (43%), Gaps = 2/83 (2%)
 Frame = -3

Query: 403 TMSFASPLLYKLITPLDIACSLSLCVVK*C--RHLCRPSLSLIRGPAFSAPCT*LGLNVL 230
           T+  A  L+   I  L IAC+ +  V      + L  P + +I   A +A  T    NVL
Sbjct: 53  TVEIARKLMEFDIKMLVIACNTATAVALEYLQKTLSIPVIGVIEPGARTAIMTTRNQNVL 112

Query: 229 VTCMSGRKKRHRWRNHINRDNVH 161
           V    G  K   +R HI R N H
Sbjct: 113 VLGTEGTIKSEAYRTHIKRINPH 135


>sp|P63638|MURI_STAAN Glutamate racemase OS=Staphylococcus aureus
           (strain N315) GN=murI PE=1 SV=1
          Length = 266

 Score = 29.6 bits (65), Expect = 7.5
 Identities = 27/83 (32%), Positives = 36/83 (43%), Gaps = 2/83 (2%)
 Frame = -3

Query: 403 TMSFASPLLYKLITPLDIACSLSLCVVK*C--RHLCRPSLSLIRGPAFSAPCT*LGLNVL 230
           T+  A  L+   I  L IAC+ +  V      + L  P + +I   A +A  T    NVL
Sbjct: 53  TVEIARKLMEFDIKMLVIACNTATAVALEYLQKTLSIPVIGVIEPGARTAIMTTRNQNVL 112

Query: 229 VTCMSGRKKRHRWRNHINRDNVH 161
           V    G  K   +R HI R N H
Sbjct: 113 VLGTEGTIKSEAYRTHIKRINPH 135


>sp|P63637|MURI_STAAM Glutamate racemase OS=Staphylococcus aureus
           (strain Mu50 / ATCC 700699) GN=murI PE=1 SV=1
          Length = 266

 Score = 29.6 bits (65), Expect = 7.5
 Identities = 27/83 (32%), Positives = 36/83 (43%), Gaps = 2/83 (2%)
 Frame = -3

Query: 403 TMSFASPLLYKLITPLDIACSLSLCVVK*C--RHLCRPSLSLIRGPAFSAPCT*LGLNVL 230
           T+  A  L+   I  L IAC+ +  V      + L  P + +I   A +A  T    NVL
Sbjct: 53  TVEIARKLMEFDIKMLVIACNTATAVALEYLQKTLSIPVIGVIEPGARTAIMTTRNQNVL 112

Query: 229 VTCMSGRKKRHRWRNHINRDNVH 161
           V    G  K   +R HI R N H
Sbjct: 113 VLGTEGTIKSEAYRTHIKRINPH 135


>sp|A6QG53|MURI_STAAE Glutamate racemase OS=Staphylococcus aureus
           (strain Newman) GN=murI PE=3 SV=1
          Length = 266

 Score = 29.6 bits (65), Expect = 7.5
 Identities = 27/83 (32%), Positives = 36/83 (43%), Gaps = 2/83 (2%)
 Frame = -3

Query: 403 TMSFASPLLYKLITPLDIACSLSLCVVK*C--RHLCRPSLSLIRGPAFSAPCT*LGLNVL 230
           T+  A  L+   I  L IAC+ +  V      + L  P + +I   A +A  T    NVL
Sbjct: 53  TVEIARKLMEFDIKMLVIACNTATAVALEYLQKTLSIPVIGVIEPGARTAIMTTRNQNVL 112

Query: 229 VTCMSGRKKRHRWRNHINRDNVH 161
           V    G  K   +R HI R N H
Sbjct: 113 VLGTEGTIKSEAYRTHIKRINPH 135


>sp|Q5HGT3|MURI_STAAC Glutamate racemase OS=Staphylococcus aureus
           (strain COL) GN=murI PE=3 SV=1
          Length = 266

 Score = 29.6 bits (65), Expect = 7.5
 Identities = 27/83 (32%), Positives = 36/83 (43%), Gaps = 2/83 (2%)
 Frame = -3

Query: 403 TMSFASPLLYKLITPLDIACSLSLCVVK*C--RHLCRPSLSLIRGPAFSAPCT*LGLNVL 230
           T+  A  L+   I  L IAC+ +  V      + L  P + +I   A +A  T    NVL
Sbjct: 53  TVEIARKLMEFDIKMLVIACNTATAVALEYLQKTLSIPVIGVIEPGARTAIMTTRNQNVL 112

Query: 229 VTCMSGRKKRHRWRNHINRDNVH 161
           V    G  K   +R HI R N H
Sbjct: 113 VLGTEGTIKSEAYRTHIKRINPH 135
tr_hit_id Q6BMB5
Definition tr|Q6BMB5|Q6BMB5_DEBHA Lysyl-tRNA synthetase OS=Debaryomyces hansenii
Align length 57
Score (bit) 34.3
E-value 3.1
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP911626|Adiantum capillus-veneris mRNA, clone:
YMU001_000007_C06.
         (486 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q6BMB5|Q6BMB5_DEBHA Lysyl-tRNA synthetase OS=Debaryomyces han...    34   3.1  
tr|A3GEX5|A3GEX5_PICST Lysyl-tRNA synthetase OS=Pichia stipitis ...    33   5.3  
tr|A5DDQ7|A5DDQ7_PICGU Lysyl-tRNA synthetase OS=Pichia guillierm...    33   7.0  

>tr|Q6BMB5|Q6BMB5_DEBHA Lysyl-tRNA synthetase OS=Debaryomyces
           hansenii GN=DEHA2F06820g PE=3 SV=1
          Length = 593

 Score = 34.3 bits (77), Expect = 3.1
 Identities = 16/57 (28%), Positives = 29/57 (50%)
 Frame = +2

Query: 77  YTRRRSLLSKTAHPFFLFINEGGH*FTEVYIVAVYMISPPVSFFPTTHTSYKDIQAK 247
           Y RR  ++  T +P      +GG     V+  +V +++P +   PT H  +KD +A+
Sbjct: 177 YLRRGDIIGVTGYPGRTSPAKGGEGEVSVFATSVQLLTPCLHMLPTEHYGFKDQEAR 233


>tr|A3GEX5|A3GEX5_PICST Lysyl-tRNA synthetase OS=Pichia stipitis
           GN=KRS1 PE=3 SV=1
          Length = 593

 Score = 33.5 bits (75), Expect = 5.3
 Identities = 16/57 (28%), Positives = 29/57 (50%)
 Frame = +2

Query: 77  YTRRRSLLSKTAHPFFLFINEGGH*FTEVYIVAVYMISPPVSFFPTTHTSYKDIQAK 247
           Y RR  ++  T +P      +GG     V+  +V +++P +   PT H  +KD +A+
Sbjct: 177 YLRRGDVIGVTGYPGRTAPAKGGDGEVSVFATSVQLLTPCLHMLPTEHFGFKDQEAR 233


>tr|A5DDQ7|A5DDQ7_PICGU Lysyl-tRNA synthetase OS=Pichia
           guilliermondii GN=PGUG_01408 PE=3 SV=2
          Length = 587

 Score = 33.1 bits (74), Expect = 7.0
 Identities = 16/57 (28%), Positives = 29/57 (50%)
 Frame = +2

Query: 77  YTRRRSLLSKTAHPFFLFINEGGH*FTEVYIVAVYMISPPVSFFPTTHTSYKDIQAK 247
           Y RR  ++  T +P      +GG     V+  +V +++P +   PT H  +KD +A+
Sbjct: 177 YLRRGDVIGVTGYPGRTNPAKGGEGELSVFATSVQLLTPCLHMLPTEHFGFKDQEAR 233