BP911627 |
Clone id |
YMU001_000007_C07 |
Library |
YMU01 |
Length |
507 |
Definition |
Adiantum capillus-veneris mRNA. clone: YMU001_000007_C07. |
Accession |
BP911627 |
Tissue type |
prothallium |
Developmental stage |
- |
Contig ID |
CL1575Contig1 |
Sequence |
AGAGAAGGTCAAAGCTCTTCGCCTTCTGGAAATTGTTTAACTGCTAGTGCACAGACATCC AGGAGTCTGGAGTTATTAGGATCTCTTCATATACGCAAGGATTCTTTTCCTTCGGATAGC GAAAAACGAGATGCGAGGGCATCAGCTGATGTCCCCCCAAAAGATAAGGGTGAAAACACG GGGGATTCTCAATATAATCAGATGGGTAGCAATGAAGTCTCAGAGCTTTCTCAACAGGGC ACTGGAAGGGATACTGGTGATTCACCATTGTCAGTCCTTGTTGGTCAAGCTATCAGACCC AAAGATGTTATTCGTGCTGTTGGACAGCAGCACTTTTGGAAAGCTCGCAAGGCATTACTT CGGCAACAACGTATTTATTCCGATCAAGTTTTCCAGCTACACAAACTCATCAAGGTCCAG CAATTATTGGCCGAAACCCCAGGCACGCTTATTGATGAAGAAATGCTGTATGGCGCAGTG GATGACTGTGCTGGATCTCCCTCTCAA |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
O82804 |
Definition |
sp|O82804|ELF3_ARATH Protein EARLY FLOWERING 3 OS=Arabidopsis thaliana |
Align length |
131 |
Score (bit) |
75.5 |
E-value |
1.0e-13 |
Report |
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A7YJG7 |
Definition |
tr|A7YJG7|A7YJG7_WHEAT ELF3 protein OS=Triticum aestivum |
Align length |
165 |
Score (bit) |
89.0 |
E-value |
1.0e-16 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= BP911627|Adiantum capillus-veneris mRNA, clone: YMU001_000007_C07. (507 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|A7YJG7|A7YJG7_WHEAT ELF3 protein OS=Triticum aestivum PE=2 SV=1 89 1e-16 tr|Q9SNQ6|Q9SNQ6_ORYSJ Os06g0142600 protein OS=Oryza sativa subs... 85 2e-15 tr|A2Y950|A2Y950_ORYSI Putative uncharacterized protein OS=Oryza... 84 4e-15 tr|A9SK89|A9SK89_PHYPA Predicted protein OS=Physcomitrella paten... 80 7e-14 tr|A7P4H0|A7P4H0_VITVI Chromosome chr4 scaffold_6, whole genome ... 79 1e-13 tr|B8AAB0|B8AAB0_ORYSI Putative uncharacterized protein OS=Oryza... 79 1e-13 tr|Q50K78|Q50K78_9ARAE ELF3 homologue OS=Lemna paucicostata GN=L... 72 2e-11 tr|A9SK26|A9SK26_PHYPA Predicted protein OS=Physcomitrella paten... 71 3e-11 tr|Q6UEI3|Q6UEI3_MESCR Early flowering 3 OS=Mesembryanthemum cry... 70 8e-11 tr|A7P6W0|A7P6W0_VITVI Chromosome chr9 scaffold_7, whole genome ... 70 8e-11 tr|A5AX69|A5AX69_VITVI Putative uncharacterized protein OS=Vitis... 70 8e-11 tr|Q50K74|Q50K74_LEMGI ELF3 homologue OS=Lemna gibba GN=LgELF3 H... 69 1e-10 tr|A9RIP0|A9RIP0_PHYPA Predicted protein OS=Physcomitrella paten... 62 2e-08 tr|Q5Q0C8|Q5Q0C8_ARATH Putative uncharacterized protein OS=Arabi... 60 5e-08 tr|Q5BPQ6|Q5BPQ6_ARATH Putative uncharacterized protein OS=Arabi... 60 5e-08 tr|A2ZUH2|A2ZUH2_ORYSJ Putative uncharacterized protein OS=Oryza... 57 7e-07 tr|A5Y6J3|A5Y6J3_PEA EARLY FLOWERING 3 (Fragment) OS=Pisum sativ... 51 3e-05 tr|A5BVL6|A5BVL6_VITVI Putative uncharacterized protein OS=Vitis... 49 1e-04 tr|Q9LU26|Q9LU26_ARATH Dbj|BAA83571.1 OS=Arabidopsis thaliana PE... 46 0.001 tr|Q657D6|Q657D6_ORYSJ Nematode responsive protein-like (Os01g05... 40 0.065 tr|B6PZQ7|B6PZQ7_BRAFL Putative uncharacterized protein (Fragmen... 37 0.42 tr|B0WND0|B0WND0_CULQU Putative uncharacterized protein OS=Culex... 35 2.1 tr|Q295Q3|Q295Q3_DROPS GA16198 OS=Drosophila pseudoobscura pseud... 34 3.5 tr|Q11HM8|Q11HM8_MESSB Transcription-repair coupling factor OS=M... 34 3.6 tr|A9PJK4|A9PJK4_POPJC Putative uncharacterized protein OS=Popul... 34 3.6 tr|Q59M21|Q59M21_CANAL Putative uncharacterized protein PEP1 OS=... 34 4.6 tr|Q8CJR6|Q8CJR6_STRCO Transcription termination factor Rho OS=S... 34 4.7 tr|Q4PHI4|Q4PHI4_USTMA Putative uncharacterized protein OS=Ustil... 34 4.7 tr|Q72G75|Q72G75_THET2 Cbs domain proteins OS=Thermus thermophil... 33 6.0 tr|Q9ZPL6|Q9ZPL6_TOBAC DNA-binding protein 2 OS=Nicotiana tabacu... 33 6.1
>tr|A7YJG7|A7YJG7_WHEAT ELF3 protein OS=Triticum aestivum PE=2 SV=1 Length = 769
Score = 89.0 bits (219), Expect = 1e-16 Identities = 54/165 (32%), Positives = 87/165 (52%), Gaps = 6/165 (3%) Frame = +1
Query: 1 REGQSSSPSGNCLTASAQTSRSLELLGSLHIRKDSFPSDSEKRDARASADVPPKDKGENT 180 R+ + SS S T+S S H + + +E ++A + + P Sbjct: 276 RDDKGSSYSRVKETSSINVSDKQHSRNEGHQARTRNENAAESQNAAKAGNGPYSTDVACN 335
Query: 181 GDSQYNQMGSNEVSELSQQGTGR------DTGDSPLSVLVGQAIRPKDVIRAVGQQHFWK 342 G S ++ G E E ++ TG D+ DS + L I P DV+ A+G +HFWK Sbjct: 336 GASNLSEKGLRETGEKRKRSTGHHDVQRDDSSDSSVESLPDLEISPDDVVGAIGPKHFWK 395
Query: 343 ARKALLRQQRIYSDQVFQLHKLIKVQQLLAETPGTLIDEEMLYGA 477 AR+A++ QQR+++ QVF+LH+LIKVQ+L+A +P LI+ + G+ Sbjct: 396 ARRAIVNQQRVFAVQVFELHRLIKVQKLIAASPHLLIEGDPCLGS 440
>tr|Q9SNQ6|Q9SNQ6_ORYSJ Os06g0142600 protein OS=Oryza sativa subsp. japonica GN=P0535G04.25 PE=4 SV=1 Length = 760
Score = 84.7 bits (208), Expect = 2e-15 Identities = 40/98 (40%), Positives = 64/98 (65%), Gaps = 3/98 (3%) Frame = +1
Query: 190 QYNQMGSNEVSELSQQGTGR---DTGDSPLSVLVGQAIRPKDVIRAVGQQHFWKARKALL 360 Q++ S++VS L +Q D DS + + G I P ++ A+G +HFWKAR+A++ Sbjct: 356 QHDAEKSDDVSRLLEQHDAENIDDVSDSSVECITGWEISPDKIVGAIGTKHFWKARRAIM 415
Query: 361 RQQRIYSDQVFQLHKLIKVQQLLAETPGTLIDEEMLYG 474 QQR+++ QVF+LHKL+KVQ+L+A +P LI+ + G Sbjct: 416 NQQRVFAVQVFELHKLVKVQKLIAASPHVLIESDPCLG 453
>tr|A2Y950|A2Y950_ORYSI Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_21588 PE=4 SV=1 Length = 760
Score = 84.0 bits (206), Expect = 4e-15 Identities = 40/98 (40%), Positives = 64/98 (65%), Gaps = 3/98 (3%) Frame = +1
Query: 190 QYNQMGSNEVSELSQQGTGR---DTGDSPLSVLVGQAIRPKDVIRAVGQQHFWKARKALL 360 Q++ S++VS L +Q D DS + + G I P ++ A+G +HFWKAR+A++ Sbjct: 356 QHDAEKSDDVSRLLEQHDAENIDDVSDSSVECITGWEISPDKIVGAIGTKHFWKARRAIM 415
Query: 361 RQQRIYSDQVFQLHKLIKVQQLLAETPGTLIDEEMLYG 474 QQR+++ QVF+LHKL+KVQ+L+A +P LI+ + G Sbjct: 416 NQQRVFAVQVFELHKLVKVQKLIAASPHVLIEGDPCLG 453
>tr|A9SK89|A9SK89_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_165364 PE=4 SV=1 Length = 1796
Score = 79.7 bits (195), Expect = 7e-14 Identities = 49/115 (42%), Positives = 73/115 (63%), Gaps = 11/115 (9%) Frame = +1
Query: 130 DARASADVPP---KDKG------ENTGDSQYNQMGSNEVSELSQQ--GTGRDTGDSPLSV 276 DARA+A +P +D G ++ SQ ++ S E SE SQ+ G +T S L Sbjct: 338 DARAAAALPDSVHEDGGLRVVPEQDIFSSQSSENRSGEASEFSQRKRGGSAETESSMLEN 397
Query: 277 LVGQAIRPKDVIRAVGQQHFWKARKALLRQQRIYSDQVFQLHKLIKVQQLLAETP 441 L +I +DV+ A GQQ FWK++K ++RQQ+++S QVF+LH+LI+VQ LLA++P Sbjct: 398 LPPGSICFRDVVDAFGQQEFWKSQKTIMRQQKLFSRQVFELHRLIEVQHLLAKSP 452
Score = 70.9 bits (172), Expect = 3e-11 Identities = 39/97 (40%), Positives = 60/97 (61%), Gaps = 2/97 (2%) Frame = +1
Query: 151 VPPKDKGENTGDSQYNQMGSNEVSELSQQ--GTGRDTGDSPLSVLVGQAIRPKDVIRAVG 324 + P ++ + S NQ S E+SEL QQ G+ TG L + ++ +DV+ G Sbjct: 1310 IAPSEQDIISNISSENQ--SEEISELYQQKRGSSARTGSLMLENVPTDFVQLRDVVNIFG 1367
Query: 325 QQHFWKARKALLRQQRIYSDQVFQLHKLIKVQQLLAE 435 QQ FWK +K ++RQQRI+S Q+F LH++++VQ LLA+ Sbjct: 1368 QQGFWKTQKVIIRQQRIFSKQLFDLHRIMEVQHLLAK 1404
>tr|A7P4H0|A7P4H0_VITVI Chromosome chr4 scaffold_6, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00032149001 PE=4 SV=1 Length = 497
Score = 79.3 bits (194), Expect = 1e-13 Identities = 46/122 (37%), Positives = 70/122 (57%), Gaps = 9/122 (7%) Frame = +1
Query: 136 RASADVPPKD---KGENTGDSQYNQMGSNEVSELSQQ-----GTGRDTGD-SPLSVLVGQ 288 R+ DV KD E + S N ++ E +Q T D + S + + G Sbjct: 172 RSQGDVNRKDYVSSREYSEKSASNLSTKEKIDESMKQVNKPSNTNDDLSETSMVDSMSGL 231
Query: 289 AIRPKDVIRAVGQQHFWKARKALLRQQRIYSDQVFQLHKLIKVQQLLAETPGTLIDEEML 468 I P DV+ +GQ+HFWKAR+A++ QQR+++ QVF+LH+LIKVQ+L+A +P ++DE Sbjct: 232 DITPDDVVGIIGQKHFWKARRAIVNQQRVFAVQVFELHRLIKVQRLIAGSPHLMVDESAY 291
Query: 469 YG 474 G Sbjct: 292 LG 293
>tr|B8AAB0|B8AAB0_ORYSI Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_02465 PE=4 SV=1 Length = 745
Score = 79.0 bits (193), Expect = 1e-13 Identities = 33/75 (44%), Positives = 53/75 (70%) Frame = +1
Query: 250 DTGDSPLSVLVGQAIRPKDVIRAVGQQHFWKARKALLRQQRIYSDQVFQLHKLIKVQQLL 429 D DS + + I P +++ A+G +HFWKAR+A++ QQR+++ QVF+LHKL+KVQ+L+ Sbjct: 362 DLSDSSVECITAWEISPDEIVGAIGAKHFWKARRAIINQQRVFAAQVFELHKLVKVQKLI 421
Query: 430 AETPGTLIDEEMLYG 474 A +P LI+ + G Sbjct: 422 AASPHVLIEGDPCLG 436
>tr|Q50K78|Q50K78_9ARAE ELF3 homologue OS=Lemna paucicostata GN=LpELF3 H1 PE=2 SV=1 Length = 492
Score = 72.0 bits (175), Expect = 2e-11 Identities = 48/161 (29%), Positives = 89/161 (55%), Gaps = 11/161 (6%) Frame = +1
Query: 10 QSSSPSGN---CLTASAQTSRSL--ELLGSLHIRKDSFPSDSEKRDARASADVPPK---- 162 QSS+ G+ C T S + S + +L ++ ++ S D + + R+S D Sbjct: 136 QSSNRDGHVADCKTRSFKKSDRIHEDLSSTVTLQDASSGQDHDDDNLRSSGDAEKSGSSG 195
Query: 163 --DKGENTGDSQYNQMGSNEVSELSQQGTGRDTGDSPLSVLVGQAIRPKDVIRAVGQQHF 336 +K +++GD ++M ++ SE + R+ D A P +++ +G +HF Sbjct: 196 STEKIDSSGDDAADRMVRDDASERLLVDS-REAAD---------AYNPDNLVGLIGLKHF 245
Query: 337 WKARKALLRQQRIYSDQVFQLHKLIKVQQLLAETPGTLIDE 459 WKAR+A++ QQR+ + QVF+LH+L+ +Q+LLAE+P L+++ Sbjct: 246 WKARRAIISQQRVLALQVFELHRLMNIQKLLAESPQLLLED 286
>tr|A9SK26|A9SK26_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_233510 PE=4 SV=1 Length = 766
Score = 70.9 bits (172), Expect = 3e-11 Identities = 35/100 (35%), Positives = 61/100 (61%) Frame = +1
Query: 136 RASADVPPKDKGENTGDSQYNQMGSNEVSELSQQGTGRDTGDSPLSVLVGQAIRPKDVIR 315 RA++ ++ + + + NQ G ++ + +TG S L +V +I +DV+ Sbjct: 273 RANSLTGASERNDFSNQTSENQRGEGSKPSRLRRDSSMETGSSMLENVVMGSIEFRDVVD 332
Query: 316 AVGQQHFWKARKALLRQQRIYSDQVFQLHKLIKVQQLLAE 435 A GQQ FWK + ++RQQ++++ QVF+LH+ I+VQQLLA+ Sbjct: 333 AFGQQEFWKVQMMIIRQQKLFALQVFELHRAIEVQQLLAK 372
>tr|Q6UEI3|Q6UEI3_MESCR Early flowering 3 OS=Mesembryanthemum crystallinum GN=ELF3 PE=2 SV=1 Length = 705
Score = 69.7 bits (169), Expect = 8e-11 Identities = 39/110 (35%), Positives = 63/110 (57%), Gaps = 3/110 (2%) Frame = +1
Query: 154 PPKDKGENTGDSQYNQMGSNEVSELSQQGTGRDTGDSPLSVL---VGQAIRPKDVIRAVG 324 P K G N D+ +M E L ++ R S S++ G + P DV+ +G Sbjct: 274 PLKGCGYNDVDAVNIEMPRLEEHLLERENIDRANDVSETSMVDSVSGVEVCPDDVVGIIG 333
Query: 325 QQHFWKARKALLRQQRIYSDQVFQLHKLIKVQQLLAETPGTLIDEEMLYG 474 ++HFWKAR A++ QQR+++ QVF+LH+L+KVQ+ +A +P L++ G Sbjct: 334 RKHFWKARTAIVNQQRVFAVQVFELHRLLKVQKHIAGSPHVLLEGAAFVG 383
>tr|A7P6W0|A7P6W0_VITVI Chromosome chr9 scaffold_7, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00034223001 PE=4 SV=1 Length = 614
Score = 69.7 bits (169), Expect = 8e-11 Identities = 46/167 (27%), Positives = 79/167 (47%), Gaps = 12/167 (7%) Frame = +1
Query: 1 REGQSSSPSGNCLTASAQTSRSLELLGSLHIRKDSFPSDSE-----KRDARASADVPPK- 162 + ++S N T+R ++ SLH + P +++ K PK Sbjct: 202 KRARTSLTKENKRNVVVDTNRLEDIHDSLHQGSMTLPENTDLPNPSKAVGGGYVSTSPKP 261
Query: 163 ---DKGENTGDSQYNQMGSNEVSELSQQGTGRDTGDSPLSV---LVGQAIRPKDVIRAVG 324 D +G ++ E L R+ S ++ ++G I P DV+ +G Sbjct: 262 SLLDGHRRSGGLEHELEEQKESESLQMGSIDRNCHVSNANMVGSMLGFDISPDDVVGIIG 321
Query: 325 QQHFWKARKALLRQQRIYSDQVFQLHKLIKVQQLLAETPGTLIDEEM 465 +HFWK R A++ QQR+++ QVF+LH+LIKVQ+L+A +P +D + Sbjct: 322 HKHFWKTRNAIVNQQRVFAVQVFELHRLIKVQRLIAGSPEGQLDNNL 368
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