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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP911648
Clone id YMU001_000007_E06
Library
Length 556
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000007_E06.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
AATTCGCGGCCGCAAATTCTTCCAGGTTACCATGACCAAAAGTGCTCACATAACCCCTTG
TATCTAGTTGTACAACAGAAGCTTTTTTTAATGCGTGTAGTACATACTTGACATCATGCA
AAAGTAGCTCTTGGCTATTGTTTAAGATTGTACAATTCCTTTTCGCTTCAACTTCACATG
CATAATTGTTGCCCATATAAACATTACCAAGGCAATCAGCAGTGCATGTAGCAAAAGACT
CCAATGAAGGTTTCACATGAAAAGATGCACCACTGTCCACTGTCTAGGACTATGACAAGC
CATTAGGTATAGGAAACAACGCATCGATGACATCTTGTCAAGTAATGAAAATGTCATGTA
CACCTGTCAAATGCGATGCATGAGACTATTAACTACAACCATTATCTCATCGTCGTTAGA
AATCACTTTGATCACCACACTTGATGCTATATGGGCCTTTTCAACTTCTTTGGAGGAGAA
AGCATCTACAACATCCTTTTTCTTTTCGCCATCACCTTTCTTTTTTACTTTCATCTCCTT
CTTTCTCCCATGTTCT
■■Homology search results ■■ -
sp_hit_id O66624
Definition sp|O66624|Y267_AQUAE Uncharacterized protein aq_267 OS=Aquifex aeolicus
Align length 32
Score (bit) 29.6
E-value 9.4
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP911648|Adiantum capillus-veneris mRNA, clone:
YMU001_000007_E06.
         (531 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|O66624|Y267_AQUAE Uncharacterized protein aq_267 OS=Aquifex a...    30   9.4  

>sp|O66624|Y267_AQUAE Uncharacterized protein aq_267 OS=Aquifex
           aeolicus GN=aq_267 PE=4 SV=1
          Length = 378

 Score = 29.6 bits (65), Expect = 9.4
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = +3

Query: 426 MGLFNFFGGESIYNILFLFAITFLFYFHLLLS 521
           +  + F+ G +    LFLF  + +F+FHLLL+
Sbjct: 78  VSFYEFYTGNTESGSLFLFLGSLIFFFHLLLN 109
tr_hit_id Q9ZRJ0
Definition tr|Q9ZRJ0|Q9ZRJ0_TOBAC Retrotransposon Tto1 DNA OS=Nicotiana tabacum
Align length 86
Score (bit) 52.8
E-value 1.0e-05
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP911648|Adiantum capillus-veneris mRNA, clone:
YMU001_000007_E06.
         (531 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q9ZRJ0|Q9ZRJ0_TOBAC Retrotransposon Tto1 DNA OS=Nicotiana tab...    53   1e-05
tr|Q2QZX3|Q2QZX3_ORYSJ Retrotransposon protein, putative, Ty1-co...    48   3e-04
tr|A5BQG4|A5BQG4_VITVI Putative uncharacterized protein OS=Vitis...    48   4e-04
tr|Q7G6C4|Q7G6C4_ORYSJ Putative gag-pol polyprotein (Retrotransp...    46   0.001
tr|Q5MG99|Q5MG99_IPOBA Hypothetical retrotransposon OS=Ipomoea b...    45   0.002
tr|A5AIP8|A5AIP8_VITVI Putative uncharacterized protein OS=Vitis...    44   0.007
tr|B8YLY7|B8YLY7_LOTJA Gag-Pol polyprotein OS=Lotus japonicus PE...    43   0.009
tr|A5C761|A5C761_VITVI Putative uncharacterized protein OS=Vitis...    43   0.012
tr|A5BM67|A5BM67_VITVI Putative uncharacterized protein (Fragmen...    43   0.012
tr|A5BM11|A5BM11_VITVI Putative uncharacterized protein OS=Vitis...    43   0.012
tr|A5BJP3|A5BJP3_VITVI Putative uncharacterized protein (Fragmen...    43   0.012
tr|A5BML3|A5BML3_VITVI Putative uncharacterized protein OS=Vitis...    42   0.020
tr|A5CAP9|A5CAP9_VITVI Putative uncharacterized protein OS=Vitis...    42   0.026
tr|A5BKD2|A5BKD2_VITVI Putative uncharacterized protein OS=Vitis...    41   0.034
tr|A5B5N4|A5B5N4_VITVI Putative uncharacterized protein OS=Vitis...    41   0.034
tr|A7P0C8|A7P0C8_VITVI Chromosome chr6 scaffold_3, whole genome ...    41   0.044
tr|A5C2E5|A5C2E5_VITVI Putative uncharacterized protein OS=Vitis...    41   0.044
tr|A5BBW7|A5BBW7_VITVI Putative uncharacterized protein OS=Vitis...    41   0.044
tr|A5AJI7|A5AJI7_VITVI Putative uncharacterized protein OS=Vitis...    41   0.044
tr|A5B6M5|A5B6M5_VITVI Putative uncharacterized protein OS=Vitis...    40   0.057
tr|A5C844|A5C844_VITVI Putative uncharacterized protein OS=Vitis...    40   0.075
tr|A5AS37|A5AS37_VITVI Putative uncharacterized protein OS=Vitis...    40   0.075
tr|A5CAX7|A5CAX7_VITVI Putative uncharacterized protein OS=Vitis...    40   0.098
tr|A5C6L3|A5C6L3_VITVI Putative uncharacterized protein OS=Vitis...    40   0.098
tr|A5BPZ5|A5BPZ5_VITVI Putative uncharacterized protein OS=Vitis...    40   0.098
tr|A5B8G2|A5B8G2_VITVI Putative uncharacterized protein OS=Vitis...    40   0.098
tr|A5B4R8|A5B4R8_VITVI Putative uncharacterized protein OS=Vitis...    40   0.098
tr|A5APH6|A5APH6_VITVI Putative uncharacterized protein OS=Vitis...    40   0.098
tr|A5AM64|A5AM64_VITVI Putative uncharacterized protein OS=Vitis...    40   0.098
tr|A7R7G1|A7R7G1_VITVI Chromosome undetermined scaffold_1754, wh...    39   0.13 

>tr|Q9ZRJ0|Q9ZRJ0_TOBAC Retrotransposon Tto1 DNA OS=Nicotiana
           tabacum PE=4 SV=1
          Length = 1338

 Score = 52.8 bits (125), Expect = 1e-05
 Identities = 34/86 (39%), Positives = 46/86 (53%), Gaps = 2/86 (2%)
 Frame = -1

Query: 255 VDSGASFHVKPSLESFATCTADCLGNVYMGN-NYACEVEAKRNCTILNNSQELLLHDVKY 79
           +DSGA+ H  P  E F++ T    G V MGN N++  V     C    N  +LLL DV++
Sbjct: 294 IDSGATIHATPRRELFSSYTLGDFGRVKMGNANFSTVVGKGDVCLETMNGMKLLLRDVRH 353

Query: 78  VLH-ALKKASVVQLDTRGYVSTFGHG 4
           V    L   SV +LD  GY +TF +G
Sbjct: 354 VPDMRLNLISVDKLDEEGYCNTFHNG 379


>tr|Q2QZX3|Q2QZX3_ORYSJ Retrotransposon protein, putative, Ty1-copia
           subclass OS=Oryza sativa subsp. japonica
           GN=LOC_Os11g44530 PE=4 SV=1
          Length = 1407

 Score = 48.1 bits (113), Expect = 3e-04
 Identities = 36/88 (40%), Positives = 50/88 (56%), Gaps = 5/88 (5%)
 Frame = -1

Query: 255 VDSGASFHVKPSLESFATCTADCLG--NVYMGNNYACEVEAKRNCTI-LNNSQELLLHDV 85
           +DSGA+FHV  SL+ FA       G   + + N    EVEA  + T+ L+   +L LHDV
Sbjct: 323 IDSGATFHVANSLQGFAMRRTLKRGERRIRVANGVETEVEAIGDFTLTLHTGFKLQLHDV 382

Query: 84  KYVLHALKK--ASVVQLDTRGYVSTFGH 7
            YV  ++K+   SV +LD  GY  TFG+
Sbjct: 383 LYV-PSMKRNLVSVSRLDNDGYYCTFGN 409


>tr|A5BQG4|A5BQG4_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_019025 PE=4 SV=1
          Length = 788

 Score = 47.8 bits (112), Expect = 4e-04
 Identities = 31/86 (36%), Positives = 46/86 (53%), Gaps = 2/86 (2%)
 Frame = -1

Query: 255 VDSGASFHVKPSLESFATCTADCLGNVYMGNNYACEVEAKRNCTILNN-SQELLLHDVKY 79
           VD+  SFH+    + F++ T+   G V MGN   CE+   R+  +  + + +L+L DVK+
Sbjct: 164 VDTTTSFHITARRDFFSSYTSGSFGWVKMGNEAKCEIIGMRDVELETSIACKLVLKDVKH 223

Query: 78  VLH-ALKKASVVQLDTRGYVSTFGHG 4
           VL       SV +LD  GY S  G G
Sbjct: 224 VLEMRFSLISVGKLDDEGYHSHLGKG 249


>tr|Q7G6C4|Q7G6C4_ORYSJ Putative gag-pol polyprotein
           (Retrotransposon protein, putative, Ty1-copia subclass)
           OS=Oryza sativa subsp. japonica GN=OSJNAb0022I16.7 PE=4
           SV=1
          Length = 1225

 Score = 45.8 bits (107), Expect = 0.001
 Identities = 35/88 (39%), Positives = 49/88 (55%), Gaps = 5/88 (5%)
 Frame = -1

Query: 255 VDSGASFHVKPSLESFATCTADCLG--NVYMGNNYACEVEAKRNCTI-LNNSQELLLHDV 85
           +DSGA+ HV  SL+ FA       G   + + N    EVEA  + T+ L+   +L LHDV
Sbjct: 323 IDSGATIHVANSLQGFAMRRTLRRGERRIRVANGVETEVEAIGDFTLTLHTGFKLQLHDV 382

Query: 84  KYVLHALKK--ASVVQLDTRGYVSTFGH 7
            YV  ++K+   SV +LD  GY  TFG+
Sbjct: 383 LYV-PSMKRNLVSVSRLDNGGYYCTFGN 409


>tr|Q5MG99|Q5MG99_IPOBA Hypothetical retrotransposon OS=Ipomoea
           batatas PE=4 SV=1
          Length = 1415

 Score = 45.1 bits (105), Expect = 0.002
 Identities = 30/87 (34%), Positives = 44/87 (50%), Gaps = 2/87 (2%)
 Frame = -1

Query: 255 VDSGASFHVKPSLESFATCTADCLGNVYMGNNYACEVEAKRN-CTILNNSQELLLHDVKY 79
           VDSGA++HV P  E F + T    G + MGN+   +V      C   +N  +L+L +VK+
Sbjct: 291 VDSGAAYHVTPRKEFFTSYTPGDFGELRMGNDGQVKVTGTGTVCLETSNGTKLVLKNVKH 350

Query: 78  VLH-ALKKASVVQLDTRGYVSTFGHGN 1
                L   S  +LD  G+   FG G+
Sbjct: 351 APDIRLNLISTGKLDDDGFCCFFGDGH 377


>tr|A5AIP8|A5AIP8_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_008453 PE=4 SV=1
          Length = 903

 Score = 43.5 bits (101), Expect = 0.007
 Identities = 25/83 (30%), Positives = 44/83 (53%), Gaps = 2/83 (2%)
 Frame = -1

Query: 255 VDSGASFHVKPSLESFATCTADCLGNVYMGNNYACEVEAKRN-CTILNNSQELLLHDVKY 79
           +DS AS H  P  + F + T+   G+V MGN+ + +    R+ C   +N   L+L +VK+
Sbjct: 191 IDSSASIHATPQKDFFTSYTSSDFGSVMMGNDGSAKAIGMRDVCLETSNGTMLILKNVKH 250

Query: 78  VLH-ALKKASVVQLDTRGYVSTF 13
           + +  +   S  +LD  G+ + F
Sbjct: 251 IPNICMNLISTSKLDDEGFCNIF 273


>tr|B8YLY7|B8YLY7_LOTJA Gag-Pol polyprotein OS=Lotus japonicus PE=4
           SV=1
          Length = 1305

 Score = 43.1 bits (100), Expect = 0.009
 Identities = 29/79 (36%), Positives = 42/79 (53%), Gaps = 2/79 (2%)
 Frame = -1

Query: 255 VDSGASFHVKPSLESFATCTADCLGNVYMGNNYACEVEAKRNCTI-LNNSQELLLHDVKY 79
           VDSGA++H+ P  + F T      GNV+MGN++A E+       I + +     L +V++
Sbjct: 293 VDSGATWHMTPRRDWFCTYEPVSEGNVFMGNDHALEIVGIGTVKIKMYDGTIRTLQEVRH 352

Query: 78  VLHALKK-ASVVQLDTRGY 25
           V    K   SV QLD  GY
Sbjct: 353 VKELAKNLLSVGQLDDLGY 371


>tr|A5C761|A5C761_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_027451 PE=4 SV=1
          Length = 576

 Score = 42.7 bits (99), Expect = 0.012
 Identities = 29/86 (33%), Positives = 43/86 (50%), Gaps = 2/86 (2%)
 Frame = -1

Query: 255 VDSGASFHVKPSLESFATCTADCLGNVYMGNNYACEVEAKRNCTILNN-SQELLLHDVKY 79
           VD+ ASFH+    + F++ T    G V MGN   CE+   R+  +  +   +L+L DV++
Sbjct: 43  VDTAASFHITARKDFFSSYTNGSFGWVRMGNEAKCEIVGMRDVELETSIGCKLVLKDVRH 102

Query: 78  VLH-ALKKASVVQLDTRGYVSTFGHG 4
           V        SV +LD  GY S    G
Sbjct: 103 VPEMCFSLISVGKLDDEGYHSHLREG 128


>tr|A5BM67|A5BM67_VITVI Putative uncharacterized protein (Fragment)
           OS=Vitis vinifera GN=VITISV_028479 PE=4 SV=1
          Length = 1144

 Score = 42.7 bits (99), Expect = 0.012
 Identities = 27/84 (32%), Positives = 47/84 (55%), Gaps = 3/84 (3%)
 Frame = -1

Query: 255 VDSGASFHVKPSLESFATCTADCLGNVYMGNNYACEVEAKRNCTI-LNNSQELLLHDVKY 79
           +DSGAS HV P  + F + T+   G+V MGN+ + +     N  +  +N   L+L +VK+
Sbjct: 272 IDSGASIHVTPRKDFFTSYTSGDFGSVRMGNDGSAKAIGMGNVRLETSNGIVLILKNVKH 331

Query: 78  V--LHALKKASVVQLDTRGYVSTF 13
           +  +H +   S+ +LD   + +TF
Sbjct: 332 IPDIH-MNLISIGKLDDEXFCNTF 354


>tr|A5BM11|A5BM11_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_012088 PE=4 SV=1
          Length = 330

 Score = 42.7 bits (99), Expect = 0.012
 Identities = 26/83 (31%), Positives = 45/83 (54%), Gaps = 2/83 (2%)
 Frame = -1

Query: 255 VDSGASFHVKPSLESFATCTADCLGNVYMGNNYACEVEAKRNCTI-LNNSQELLLHDVKY 79
           +DSGAS H  P  + F + T+   G+V MGN+ + +     +  +  +N   L L +VK+
Sbjct: 240 IDSGASVHATPRKDFFTSYTSGDFGSVMMGNDGSAKAIGMGDVRLETSNGIMLTLKNVKH 299

Query: 78  VLH-ALKKASVVQLDTRGYVSTF 13
           +L   +   S+ +LD  G+ +TF
Sbjct: 300 ILDIRMNLISIGKLDDEGFYNTF 322