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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP911650
Clone id YMU001_000007_E08
Library
Length 538
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000007_E08.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
CTGTCCAAATACACACACATTATCCCTAAGTGTTGAGAACCCCATCAAATCTACCACCAC
TTGTTTGTGGTCATGCACTAAAGTTGCTCAACTCTACTCTCACTAGTCAGTAACGATCTG
TCCTTGTACACACTTTCAAAAAAAGTTTTACTTGTGTTTAGTCATTAAAAGCCTGCTGAA
GCAGCCAGAAGTAGTCTCCATGTTGCCCTGCTGAAGGTGGCTTCAGCTCAAACAAATAAG
TTACAGGTCTGGGTTCGCCAAAAGCATACGTTTCAAGGTGTGGATAGACACCAAATGTCA
TACTGTCAAACGGTATCGATTGTTCTAAGAAATAAAAAGCAGTTCCTCGCCAGACGTTCG
ACCTGATATCTTGAATATTGATCATTGTACATTGTCAAAATCAGCGCTATGTCTGCACGA
CATCCTGATAACAAAATGACACTAAGAGAAGAAAAGAAATCCAGCAGTCTCTTTGCCAGA
GATTCATCATCTGGTTAATCTCGTTTGAGTACCTGCAGGTAATATCTCAAGGGCGAAT
■■Homology search results ■■ -
sp_hit_id Q1EHT7
Definition sp|Q1EHT7|C3H4_ORYSJ Zinc finger CCCH domain-containing protein 4 OS=Oryza sativa subsp. japonica
Align length 60
Score (bit) 43.9
E-value 6.0e-10
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP911650|Adiantum capillus-veneris mRNA, clone:
YMU001_000007_E08.
         (538 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q1EHT7|C3H4_ORYSJ Zinc finger CCCH domain-containing protein ...    44   6e-10
sp|Q03707|SRC1_YEAST Protein SRC1 OS=Saccharomyces cerevisiae GN...    30   7.5  
sp|P10252|CD48_RAT CD48 antigen OS=Rattus norvegicus GN=Cd48 PE=...    30   9.7  

>sp|Q1EHT7|C3H4_ORYSJ Zinc finger CCCH domain-containing protein 4
            OS=Oryza sativa subsp. japonica GN=Os01g0256800 PE=2 SV=1
          Length = 1007

 Score = 43.9 bits (102), Expect(2) = 6e-10
 Identities = 23/60 (38%), Positives = 40/60 (66%), Gaps = 2/60 (3%)
 Frame = -3

Query: 500  D*PDDESLAKRLL--DFFSSLSVILLSGCRADIALILTMYNDQYSRYQVERLARNCFLFL 327
            D   +ES++++++   FF  +++  LS   +D+ +I+ M N ++ + QVERLAR CFLFL
Sbjct: 890  DIDSNESISEQVVLQKFFQHIAIKTLSEKMSDLQVIVIMNNAKFVQLQVERLARECFLFL 949



 Score = 38.5 bits (88), Expect(2) = 6e-10
 Identities = 20/51 (39%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
 Frame = -1

Query: 337  FYFLEQSIPFDSMTFGVYPHLETYAFGEP--RPVTYLFELKPPSAGQHGDY 191
            F FL +S  FD  T G +     Y  G     PV Y+F + PP+  Q GDY
Sbjct: 946  FLFLGESFMFDEATLGWFSDTPNYPRGMQVSAPVAYIFSMHPPTGIQFGDY 996


>sp|Q03707|SRC1_YEAST Protein SRC1 OS=Saccharomyces cerevisiae
           GN=SRC1 PE=1 SV=2
          Length = 834

 Score = 30.0 bits (66), Expect = 7.5
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -1

Query: 517 CRYSNEINQMMNLWQRDCWISFLLLV 440
           CR+  EI Q    +QR  W+ FLL+V
Sbjct: 691 CRFEREIYQTYKKFQRPIWLMFLLIV 716


>sp|P10252|CD48_RAT CD48 antigen OS=Rattus norvegicus GN=Cd48 PE=1
           SV=1
          Length = 240

 Score = 29.6 bits (65), Expect = 9.7
 Identities = 14/35 (40%), Positives = 17/35 (48%)
 Frame = -3

Query: 221 ATFSRATWRXXXXXXXXXXXLNTSKTFFESVYKDR 117
           A++ R TW             N  KT FESV+KDR
Sbjct: 49  ASYQRLTWLHTTNQKILEYFPNGKKTVFESVFKDR 83
tr_hit_id O22243
Definition tr|O22243|O22243_ARATH Putative ATP-dependent RNA helicase A OS=Arabidopsis thaliana
Align length 64
Score (bit) 46.2
E-value 3.0e-09
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP911650|Adiantum capillus-veneris mRNA, clone:
YMU001_000007_E08.
         (538 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|O22243|O22243_ARATH Putative ATP-dependent RNA helicase A OS=...    46   3e-09
tr|A2ZRF0|A2ZRF0_ORYSJ Putative uncharacterized protein OS=Oryza...    44   1e-08
tr|B8ABU4|B8ABU4_ORYSI Putative uncharacterized protein OS=Oryza...    44   1e-08
tr|A7Q0B7|A7Q0B7_VITVI Chromosome chr7 scaffold_42, whole genome...    44   3e-07
tr|Q2M412|Q2M412_PHYIN Trypsin protease GIP-like OS=Phytophthora...    35   2.5  
tr|B1AC86|B1AC86_PHYIN Serine protease OS=Phytophthora infestans...    35   3.3  

>tr|O22243|O22243_ARATH Putative ATP-dependent RNA helicase A
            OS=Arabidopsis thaliana GN=At2g47680 PE=2 SV=2
          Length = 1015

 Score = 46.2 bits (108), Expect(2) = 3e-09
 Identities = 24/64 (37%), Positives = 40/64 (62%), Gaps = 4/64 (6%)
 Frame = -1

Query: 340  AFYFLEQSIPFDSMTFGVYPHLETYAFGEP----RPVTYLFELKPPSAGQHGDYFWLLQQ 173
            +F+FL +S P DS +FG +   +T    +P    RP++Y+F L PPS  Q G+Y  LL++
Sbjct: 953  SFFFLGESFPHDSESFGAFQ--DTLTIQKPMLVSRPISYVFNLHPPSDIQFGNYTSLLRK 1010

Query: 172  AFND 161
            + ++
Sbjct: 1011 SLHN 1014



 Score = 38.1 bits (87), Expect(2) = 3e-09
 Identities = 20/47 (42%), Positives = 29/47 (61%)
 Frame = -3

Query: 467  LLDFFSSLSVILLSGCRADIALILTMYNDQYSRYQVERLARNCFLFL 327
            L +FF  +++ LL      I ++LTM N ++S  QVE+LAR  F FL
Sbjct: 911  LQNFFEHMAIRLLGDKLYKIRVVLTMNNVRFSLLQVEKLARESFFFL 957


>tr|A2ZRF0|A2ZRF0_ORYSJ Putative uncharacterized protein OS=Oryza
            sativa subsp. japonica GN=OsJ_001122 PE=4 SV=1
          Length = 1031

 Score = 43.9 bits (102), Expect(2) = 1e-08
 Identities = 23/60 (38%), Positives = 40/60 (66%), Gaps = 2/60 (3%)
 Frame = -3

Query: 500  D*PDDESLAKRLL--DFFSSLSVILLSGCRADIALILTMYNDQYSRYQVERLARNCFLFL 327
            D   +ES++++++   FF  +++  LS   +D+ +I+ M N ++ + QVERLAR CFLFL
Sbjct: 914  DIDSNESISEQVVLQKFFQHIAIKTLSEKMSDLQVIVIMNNAKFVQLQVERLARECFLFL 973



 Score = 38.5 bits (88), Expect(2) = 1e-08
 Identities = 20/51 (39%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
 Frame = -1

Query: 337  FYFLEQSIPFDSMTFGVYPHLETYAFGEP--RPVTYLFELKPPSAGQHGDY 191
            F FL +S  FD  T G +     Y  G     PV Y+F + PP+  Q GDY
Sbjct: 970  FLFLGESFMFDEATLGWFSDTPNYPRGMQVSAPVAYIFSMHPPTGIQFGDY 1020


>tr|B8ABU4|B8ABU4_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_01237 PE=4 SV=1
          Length = 821

 Score = 43.9 bits (102), Expect(2) = 1e-08
 Identities = 23/60 (38%), Positives = 40/60 (66%), Gaps = 2/60 (3%)
 Frame = -3

Query: 500 D*PDDESLAKRLL--DFFSSLSVILLSGCRADIALILTMYNDQYSRYQVERLARNCFLFL 327
           D   +ES++++++   FF  +++  LS   +D+ +I+ M N ++ + QVERLAR CFLFL
Sbjct: 704 DIDSNESISEQVVLQKFFQHIAIKTLSEKMSDLQVIVIMNNAKFVQLQVERLARECFLFL 763



 Score = 38.5 bits (88), Expect(2) = 1e-08
 Identities = 20/51 (39%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
 Frame = -1

Query: 337 FYFLEQSIPFDSMTFGVYPHLETYAFGEP--RPVTYLFELKPPSAGQHGDY 191
           F FL +S  FD  T G +     Y  G     PV Y+F + PP+  Q GDY
Sbjct: 760 FLFLGESFMFDEATLGWFSDTPNYPRGMQVSAPVAYIFSMHPPTGIQFGDY 810


>tr|A7Q0B7|A7Q0B7_VITVI Chromosome chr7 scaffold_42, whole genome
            shotgun sequence OS=Vitis vinifera GN=GSVIVT00027989001
            PE=4 SV=1
          Length = 996

 Score = 44.3 bits (103), Expect(2) = 3e-07
 Identities = 20/45 (44%), Positives = 31/45 (68%)
 Frame = -3

Query: 458  FFSSLSVILLSGCRADIALILTMYNDQYSRYQVERLARNCFLFLR 324
            FF  L+V +L+     + +ILTM N ++S+ QVE+L R+CF FL+
Sbjct: 894  FFECLAVRILADAMYQVQVILTMKNIRFSQLQVEKLGRDCFFFLK 938



 Score = 33.1 bits (74), Expect(2) = 3e-07
 Identities = 19/51 (37%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
 Frame = -1

Query: 337  FYFLEQSIPFDSMTFGVYPHLET--YAFGEPRPVTYLFELKPPSAGQHGDY 191
            F+FL+ S PFD  +FG      T        R  +Y+F L+PP+    GDY
Sbjct: 934  FFFLKCSFPFDESSFGELTDKVTTKKPMLVSRATSYVFNLQPPTDILFGDY 984


>tr|Q2M412|Q2M412_PHYIN Trypsin protease GIP-like OS=Phytophthora
           infestans PE=2 SV=1
          Length = 257

 Score = 35.0 bits (79), Expect = 2.5
 Identities = 24/69 (34%), Positives = 31/69 (44%), Gaps = 2/69 (2%)
 Frame = -2

Query: 528 EILPAGTQTRLT--R**ISGKETAGFLFFS*CHFVIRMSCRHSADFDNVQ*SIFKISGRT 355
           EI+PAGT+T  T  R   SG    G    S  H +    C  S D   V      I+G T
Sbjct: 32  EIIPAGTKTYTTGIRRTASGNNVCGGTLISPTHVITASHCSSSYDIRWVSVGSHYINGTT 91

Query: 354 SGEELLFIS 328
            GE++  +S
Sbjct: 92  DGEQIKVVS 100


>tr|B1AC86|B1AC86_PHYIN Serine protease OS=Phytophthora infestans
           PE=3 SV=1
          Length = 257

 Score = 34.7 bits (78), Expect = 3.3
 Identities = 24/69 (34%), Positives = 31/69 (44%), Gaps = 2/69 (2%)
 Frame = -2

Query: 528 EILPAGTQTRLT--R**ISGKETAGFLFFS*CHFVIRMSCRHSADFDNVQ*SIFKISGRT 355
           EI+PAGT+T  T  R   SG    G    S  H +    C  S D   V      I+G T
Sbjct: 32  EIIPAGTKTYTTGIRRTASGNNVCGGTLISPTHVITASHCGSSYDIRWVSVGSHYINGTT 91

Query: 354 SGEELLFIS 328
            GE++  +S
Sbjct: 92  DGEQIKVVS 100