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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP911653
Clone id YMU001_000007_E11
Library
Length 498
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000007_E11.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
TATTACCTGCAGGTACTCCACCCAAACCAAGTCAAAACTGTAGCATCGAACTTCATTGTT
GGCAAATGAGTCACTGTAAGCAGCCATGCCGAGGGGCTGTAGCACAGAAATACTCCATCC
CTTTTACTTGAAACTCAAATCAGCATCCTTCTCTTCATGGGGCGCTTGCTCCTAGCACTT
GCATCATCATCATTGTCAGCTTGCCCTTCACTGTCATCCTCACCAGCCCCCAGCTCAATT
GTTAATTCGCATGGTTCAGATGAAGTGCGGCCTCTATTTCGAGAATTTTCCTAATGGGAG
TAGAAGGGGCCTGAGAAGCCATAGCCTGCTGACTCCTCTTGGGCATAAGCTCTGCCCCTT
GTTCCACCATCTCCTTCATCAAAATCCAGTCTTTGAAGTCAAATCTAAAGACAAATTGAG
TATTCACAACTTGTTGCTGTTCTTCAACTCCCTGAGGCCTCCCTGCCCTTTCAGCAGCAG
TAGGAGCATACCTGAATG
■■Homology search results ■■ -
sp_hit_id Q4P5U4
Definition sp|Q4P5U4|DBP4_USTMA ATP-dependent RNA helicase DBP4 OS=Ustilago maydis
Align length 80
Score (bit) 34.3
E-value 0.33
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP911653|Adiantum capillus-veneris mRNA, clone:
YMU001_000007_E11.
         (498 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q4P5U4|DBP4_USTMA ATP-dependent RNA helicase DBP4 OS=Ustilago...    34   0.33 
sp|A5I4J3|IF2_CLOBH Translation initiation factor IF-2 OS=Clostr...    31   2.8  
sp|A7FVZ3|IF2_CLOB1 Translation initiation factor IF-2 OS=Clostr...    31   2.8  
sp|Q6CFT1|ESF2_YARLI Pre-rRNA-processing protein ESF2 OS=Yarrowi...    31   2.8  
sp|P05790|FIBH_BOMMO Fibroin heavy chain OS=Bombyx mori GN=FIBH ...    31   3.6  
sp|A6SMQ7|CHZ1_BOTFB Histone H2A.Z-specific chaperone chz1 OS=Bo...    31   3.6  
sp|A7GG06|IF2_CLOBL Translation initiation factor IF-2 OS=Clostr...    30   4.7  
sp|Q9NY27|PP4R2_HUMAN Serine/threonine-protein phosphatase 4 reg...    30   6.1  
sp|Q53GL7|PAR10_HUMAN Poly [ADP-ribose] polymerase 10 OS=Homo sa...    30   8.0  

>sp|Q4P5U4|DBP4_USTMA ATP-dependent RNA helicase DBP4 OS=Ustilago
           maydis GN=DBP4 PE=3 SV=1
          Length = 869

 Score = 34.3 bits (77), Expect = 0.33
 Identities = 24/80 (30%), Positives = 39/80 (48%), Gaps = 1/80 (1%)
 Frame = -2

Query: 380 DEGD-GGTRGRAYAQEESAGYGFSGPFYSH*ENSRNRGRTSSEPCELTIELGAGEDDSEG 204
           D GD GG+      +EE+ G     P      ++R+ G  + +  +LT E    +DD   
Sbjct: 763 DNGDEGGSGDDDEEEEETGGRAVLAPI-----DNRSDGYETPD-FDLTTEEDEDDDDDAD 816

Query: 203 QADNDDDASARSKRPMKRRM 144
             D+DDD + R+  P +R+M
Sbjct: 817 DDDDDDDEAYRAPAPKRRKM 836


>sp|A5I4J3|IF2_CLOBH Translation initiation factor IF-2
           OS=Clostridium botulinum (strain Hall / ATCC 3502 / NCTC
           13319 / Type A) GN=infB PE=3 SV=1
          Length = 688

 Score = 31.2 bits (69), Expect = 2.8
 Identities = 17/47 (36%), Positives = 25/47 (53%)
 Frame = -2

Query: 257 EPCELTIELGAGEDDSEGQADNDDDASARSKRPMKRRMLI*VSSKRD 117
           E   L  EL +G++ SE   + DD+    +K P+K  M    S+KRD
Sbjct: 42  EDANLIKELLSGKEKSEKTKEEDDEIETTAKNPIKESMNNKKSNKRD 88


>sp|A7FVZ3|IF2_CLOB1 Translation initiation factor IF-2
           OS=Clostridium botulinum (strain ATCC 19397 / Type A)
           GN=infB PE=3 SV=1
          Length = 688

 Score = 31.2 bits (69), Expect = 2.8
 Identities = 17/47 (36%), Positives = 25/47 (53%)
 Frame = -2

Query: 257 EPCELTIELGAGEDDSEGQADNDDDASARSKRPMKRRMLI*VSSKRD 117
           E   L  EL +G++ SE   + DD+    +K P+K  M    S+KRD
Sbjct: 42  EDANLIKELLSGKEKSEKTKEEDDEIETTAKNPIKESMNNKKSNKRD 88


>sp|Q6CFT1|ESF2_YARLI Pre-rRNA-processing protein ESF2 OS=Yarrowia
           lipolytica GN=ESF2 PE=3 SV=1
          Length = 324

 Score = 31.2 bits (69), Expect = 2.8
 Identities = 14/50 (28%), Positives = 27/50 (54%), Gaps = 4/50 (8%)
 Frame = -2

Query: 290 ENSRNRGRTSSEPCELTIELGA----GEDDSEGQADNDDDASARSKRPMK 153
           E+   +GRTS +  +   EL      G+D+ E + D +++   + K+P+K
Sbjct: 50  EDEEEKGRTSKKKTKDFFELAGKTDDGDDEEEDEEDEEEEEEEKEKKPVK 99


>sp|P05790|FIBH_BOMMO Fibroin heavy chain OS=Bombyx mori GN=FIBH
           PE=1 SV=4
          Length = 5263

 Score = 30.8 bits (68), Expect = 3.6
 Identities = 16/54 (29%), Positives = 26/54 (48%)
 Frame = -2

Query: 365 GTRGRAYAQEESAGYGFSGPFYSH*ENSRNRGRTSSEPCELTIELGAGEDDSEG 204
           GT  ++Y   ++  Y  SGP+ S+   S ++G TS       +  GAG   + G
Sbjct: 109 GTVAQSYVAADAGAYSQSGPYVSNSGYSTHQGYTSDFSTSAAVGAGAGAGAAAG 162


>sp|A6SMQ7|CHZ1_BOTFB Histone H2A.Z-specific chaperone chz1
           OS=Botryotinia fuckeliana (strain B05.10) GN=chz1 PE=3
           SV=1
          Length = 111

 Score = 30.8 bits (68), Expect = 3.6
 Identities = 13/34 (38%), Positives = 24/34 (70%)
 Frame = -2

Query: 281 RNRGRTSSEPCELTIELGAGEDDSEGQADNDDDA 180
           + +G++++EP ++T  +G G DDS  + + DDDA
Sbjct: 14  KGKGKSAAEPQDVT--MGEGGDDSSSEEEVDDDA 45


>sp|A7GG06|IF2_CLOBL Translation initiation factor IF-2
           OS=Clostridium botulinum (strain Langeland / NCTC 10281
           / Type F) GN=infB PE=3 SV=1
          Length = 688

 Score = 30.4 bits (67), Expect = 4.7
 Identities = 16/47 (34%), Positives = 26/47 (55%)
 Frame = -2

Query: 257 EPCELTIELGAGEDDSEGQADNDDDASARSKRPMKRRMLI*VSSKRD 117
           E  +L  EL +G++ SE   + DD+    +K P+K  +    S+KRD
Sbjct: 42  EDADLIKELLSGKEKSEKTKEEDDEIETTAKNPIKESINNKKSNKRD 88


>sp|Q9NY27|PP4R2_HUMAN Serine/threonine-protein phosphatase 4
           regulatory subunit 2 OS=Homo sapiens GN=PPP4R2 PE=1 SV=3
          Length = 417

 Score = 30.0 bits (66), Expect = 6.1
 Identities = 21/57 (36%), Positives = 28/57 (49%), Gaps = 8/57 (14%)
 Frame = -2

Query: 296 H*ENSRNRG--RTSSEPCELTIEL------GAGEDDSEGQADNDDDASARSKRPMKR 150
           H E S N G   +SS  C  T EL        GE  SE   +NDD+A+  +  PM++
Sbjct: 360 HSEGSENEGPVSSSSSDCRETEELVGSNSSKTGEILSESSMENDDEATEVTDEPMEQ 416


>sp|Q53GL7|PAR10_HUMAN Poly [ADP-ribose] polymerase 10 OS=Homo
           sapiens GN=PARP10 PE=1 SV=2
          Length = 1025

 Score = 29.6 bits (65), Expect = 8.0
 Identities = 22/68 (32%), Positives = 35/68 (51%), Gaps = 4/68 (5%)
 Frame = -3

Query: 448 VEEQQQVVNTQFVFRFDFKDWILMKEMVEQGAELMPKRS----QQAMASQAPSTPIRKIL 281
           +EE ++++ T      D +DW L +E+ E+G +  P+       +     APST   + L
Sbjct: 592 LEEVRELLATLEGLDLDGEDW-LPRELEEEGPQEQPEEEVTPGHEEEEPVAPSTVAPRWL 650

Query: 280 EIEAALHL 257
           E EAAL L
Sbjct: 651 EEEAALQL 658
tr_hit_id B4FDX3
Definition tr|B4FDX3|B4FDX3_MAIZE Putative uncharacterized protein OS=Zea mays
Align length 62
Score (bit) 55.8
E-value 1.0e-06
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP911653|Adiantum capillus-veneris mRNA, clone:
YMU001_000007_E11.
         (498 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B4FDX3|B4FDX3_MAIZE Putative uncharacterized protein OS=Zea m...    56   1e-06
tr|B6TF46|B6TF46_MAIZE Putative uncharacterized protein OS=Zea m...    55   1e-06
tr|B4FSE7|B4FSE7_MAIZE Putative uncharacterized protein OS=Zea m...    55   2e-06
tr|A9TPF3|A9TPF3_PHYPA Predicted protein (Fragment) OS=Physcomit...    53   9e-06
tr|A7PVV4|A7PVV4_VITVI Chromosome chr8 scaffold_34, whole genome...    52   2e-05
tr|Q9C689|Q9C689_ARATH Putative uncharacterized protein F23H24.4...    51   3e-05
tr|A7NZZ7|A7NZZ7_VITVI Chromosome chr6 scaffold_3, whole genome ...    50   5e-05
tr|B8AJA9|B8AJA9_ORYSI Putative uncharacterized protein OS=Oryza...    49   1e-04
tr|Q7EXY7|Q7EXY7_ORYSJ Os08g0510900 protein OS=Oryza sativa subs...    48   2e-04
tr|B8BCB8|B8BCB8_ORYSI Putative uncharacterized protein OS=Oryza...    48   2e-04
tr|A3BUR1|A3BUR1_ORYSJ Putative uncharacterized protein OS=Oryza...    48   2e-04
tr|Q69XQ4|Q69XQ4_ORYSJ Os06g0618000 protein OS=Oryza sativa subs...    47   5e-04
tr|B8B4M1|B8B4M1_ORYSI Putative uncharacterized protein OS=Oryza...    47   5e-04
tr|B6V8G0|B6V8G0_HELAN COG5125-like protein OS=Helianthus annuus...    44   0.003
tr|Q9LT44|Q9LT44_ARATH Arabidopsis thaliana genomic DNA, chromos...    40   0.080
tr|Q6K3M6|Q6K3M6_ORYSJ Putative uncharacterized protein OSJNBb00...    39   0.14 
tr|A3A434|A3A434_ORYSJ Putative uncharacterized protein OS=Oryza...    38   0.30 
tr|A2QIF2|A2QIF2_ASPNC Complex: SPT4 and SPT5 from S. cerevisiae...    37   0.68 
tr|Q69LA7|Q69LA7_ORYSJ Putative uncharacterized protein B1026C12...    35   1.5  
tr|A3BFP3|A3BFP3_ORYSJ Putative uncharacterized protein OS=Oryza...    35   1.5  
tr|B3KZC8|B3KZC8_PLAKH Reductase, putative OS=Plasmodium knowles...    35   2.6  
tr|Q2GVM0|Q2GVM0_CHAGB Putative uncharacterized protein OS=Chaet...    34   3.4  
tr|Q4FWG0|Q4FWG0_LEIMA ATP-dependent RNA helicase, putative OS=L...    33   5.7  
tr|B4J3U4|B4J3U4_DROGR GH20401 OS=Drosophila grimshawi GN=GH2040...    33   5.7  
tr|A8J9Q8|A8J9Q8_CHLRE Predicted protein OS=Chlamydomonas reinha...    33   7.5  
tr|B4LUW4|B4LUW4_DROVI GJ17388 OS=Drosophila virilis GN=GJ17388 ...    33   9.8  
tr|A4HJ50|A4HJ50_LEIBR Putative uncharacterized protein OS=Leish...    33   9.8  
tr|B8PIG3|B8PIG3_9APHY Predicted protein OS=Postia placenta Mad-...    33   9.8  

>tr|B4FDX3|B4FDX3_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 396

 Score = 55.8 bits (133), Expect = 1e-06
 Identities = 31/62 (50%), Positives = 36/62 (58%), Gaps = 13/62 (20%)
 Frame = -3

Query: 430 VVNTQFVFRFDFKDWILMKEMVEQGAELMPKRSQQAMAS-------------QAPSTPIR 290
           VV   FVFRFDFKDW LMK +V +G ELMP RS Q +A+               PST IR
Sbjct: 272 VVYNHFVFRFDFKDWKLMKGVVPEGEELMPHRSSQTIANTGGNNPTQSEAPLATPSTTIR 331

Query: 289 KI 284
           K+
Sbjct: 332 KL 333


>tr|B6TF46|B6TF46_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 352

 Score = 55.5 bits (132), Expect = 1e-06
 Identities = 29/72 (40%), Positives = 42/72 (58%), Gaps = 11/72 (15%)
 Frame = -3

Query: 433 QVVNTQFVFRFDFKDWILMKEMVEQGAELMPKRSQQA-----------MASQAPSTPIRK 287
           +V  + FVFRFDFKDW LMKE+V +G EL+P R+ Q+           + ++A  TPIRK
Sbjct: 259 EVSYSHFVFRFDFKDWKLMKEVVTEGEELLPHRTSQSNLCNEENDQPNLEARAQITPIRK 318

Query: 286 ILEIEAALHLNH 251
           +      +  +H
Sbjct: 319 LTRNRGLVFQDH 330


>tr|B4FSE7|B4FSE7_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 352

 Score = 54.7 bits (130), Expect = 2e-06
 Identities = 28/61 (45%), Positives = 39/61 (63%), Gaps = 11/61 (18%)
 Frame = -3

Query: 433 QVVNTQFVFRFDFKDWILMKEMVEQGAELMPKRSQQA-----------MASQAPSTPIRK 287
           +V  + FVFRFDFKDW LMKE+V +G EL+P R+ Q+           + ++A  TPIRK
Sbjct: 259 EVSYSHFVFRFDFKDWKLMKEVVTEGEELLPHRTSQSNLCNEENDQPNLEARAQITPIRK 318

Query: 286 I 284
           +
Sbjct: 319 L 319


>tr|A9TPF3|A9TPF3_PHYPA Predicted protein (Fragment)
           OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_148594 PE=4 SV=1
          Length = 321

 Score = 52.8 bits (125), Expect = 9e-06
 Identities = 27/51 (52%), Positives = 33/51 (64%), Gaps = 2/51 (3%)
 Frame = -3

Query: 433 QVVNTQFVFRFDFKDWILMKEMVEQGAELMPKRSQ--QAMASQAPSTPIRK 287
           QV NTQFVFR+D+  W  M+E +E GAELMP R      +   + STPIRK
Sbjct: 233 QVTNTQFVFRYDWTCWQTMQEKLEAGAELMPDRQSTLDPLLQPSQSTPIRK 283


>tr|A7PVV4|A7PVV4_VITVI Chromosome chr8 scaffold_34, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00025372001
           PE=4 SV=1
          Length = 380

 Score = 51.6 bits (122), Expect = 2e-05
 Identities = 28/64 (43%), Positives = 36/64 (56%), Gaps = 14/64 (21%)
 Frame = -3

Query: 433 QVVNTQFVFRFDFKDWILMKEMVEQGAELMPKR--------------SQQAMASQAPSTP 296
           +V    FVFRFDFKDW LM   V  G ELMP+R              +++  A+ AP+TP
Sbjct: 277 EVCYNHFVFRFDFKDWKLMATSVGAGEELMPQRNSVNLPNNSQTDSVAEECEAAAAPTTP 336

Query: 295 IRKI 284
           IRK+
Sbjct: 337 IRKL 340


>tr|Q9C689|Q9C689_ARATH Putative uncharacterized protein F23H24.4
           (Putative uncharacterized protein At1g51130)
           OS=Arabidopsis thaliana GN=At1g51130 PE=2 SV=1
          Length = 403

 Score = 51.2 bits (121), Expect = 3e-05
 Identities = 28/65 (43%), Positives = 33/65 (50%), Gaps = 15/65 (23%)
 Frame = -3

Query: 433 QVVNTQFVFRFDFKDWILMKEMVEQGAELMPKRSQQAMASQAP---------------ST 299
           +V+   FVFR DFKDW LM EMV  G ELMP R     +S  P               +T
Sbjct: 303 EVIYNHFVFRLDFKDWKLMSEMVPLGEELMPHRQTAVASSSCPAASAPASADFTQDTQTT 362

Query: 298 PIRKI 284
           PIRK+
Sbjct: 363 PIRKL 367


>tr|A7NZZ7|A7NZZ7_VITVI Chromosome chr6 scaffold_3, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00024708001
           PE=4 SV=1
          Length = 377

 Score = 50.4 bits (119), Expect = 5e-05
 Identities = 27/49 (55%), Positives = 33/49 (67%), Gaps = 2/49 (4%)
 Frame = -3

Query: 436 QQVVNTQFVFRFDFKDWILMKEMVEQGAELMP--KRSQQAMASQAPSTP 296
           ++VV + FVFRFDFKDW LM ++V  G ELMP   RS+   ASQA   P
Sbjct: 277 REVVYSHFVFRFDFKDWKLMMDLVPAGEELMPHRDRSKGLNASQAGLAP 325


>tr|B8AJA9|B8AJA9_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_06217 PE=4 SV=1
          Length = 360

 Score = 48.9 bits (115), Expect = 1e-04
 Identities = 27/62 (43%), Positives = 35/62 (56%), Gaps = 12/62 (19%)
 Frame = -3

Query: 433 QVVNTQFVFRFDFKDWILMKEMVEQGAELMPKRSQQAMASQ------------APSTPIR 290
           +V  + FVFRFDFKDW LM+E+V  G ELMP R+ + +               A  TPIR
Sbjct: 262 EVSYSHFVFRFDFKDWKLMQEVVPDGEELMPHRNPENIPCAEDHDQADPPELCAQRTPIR 321

Query: 289 KI 284
           K+
Sbjct: 322 KL 323


>tr|Q7EXY7|Q7EXY7_ORYSJ Os08g0510900 protein OS=Oryza sativa subsp.
           japonica GN=OSJNBa0016N23.127 PE=4 SV=1
          Length = 397

 Score = 48.1 bits (113), Expect = 2e-04
 Identities = 20/34 (58%), Positives = 28/34 (82%)
 Frame = -3

Query: 436 QQVVNTQFVFRFDFKDWILMKEMVEQGAELMPKR 335
           ++V+N+Q+VFRFD KDW +M+ +VE G ELMP R
Sbjct: 297 REVINSQYVFRFDTKDWKIMEGVVEPGDELMPHR 330


>tr|B8BCB8|B8BCB8_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_29840 PE=4 SV=1
          Length = 396

 Score = 48.1 bits (113), Expect = 2e-04
 Identities = 20/34 (58%), Positives = 28/34 (82%)
 Frame = -3

Query: 436 QQVVNTQFVFRFDFKDWILMKEMVEQGAELMPKR 335
           ++V+N+Q+VFRFD KDW +M+ +VE G ELMP R
Sbjct: 296 REVINSQYVFRFDTKDWKIMEGVVEPGDELMPHR 329