BP911654
Clone id YMU001_000007_F01
Library
Length 522
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000007_F01.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence
GGAGAACAAGAGAGAGACCTTGAAAAGCTTGACAAAGAGCAGGCGGAGCTGCAAAAAATT
AACCTTGCAGCCGTCAAAACCGATGTTGTTTCCCTGATAAATGTGCTGACAAAGGACCTT
TCGCAAGGGAGTGAGATGGGTAAGGCTATGGCCTGCTATGCGCTGGATGCTTTGCTAGGC
ATAGACAGTGATCTAATCATTCTTAGCCAGCTGCAAAATAGGGGTTTATTGCAGGCTTGC
CTAGTTGACGTTAGTACGAACTCATACCAGGCAGTGCTACTCCCATCTCCTGCCTCTGTA
AGACGTCTCTACACACTTGAGGCTGAGCTAGCTTTGCTACTTCGAGTCGGTTATCAGAAC
AAGAAACGAGGAGCACAGACATTGTTCGCGATGGGAGTGCTGCAGCATCTGACCTCTTGT
AGAGCCATTGATGTTCAACTTTCGGAAGATGCGAAATGGGAGCAAGTTGTAAAGTCTGGA
ACTGGGCTGCGTTCACAACATGATAGGCATCATCAGATTGTG
■■Homology search results ■■ -
sp_hit_id Q92621
Definition sp|Q92621|NU205_HUMAN Nuclear pore complex protein Nup205 OS=Homo sapiens
Align length 139
Score (bit) 45.1
E-value 0.0002
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP911654|Adiantum capillus-veneris mRNA, clone:
YMU001_000007_F01.
(522 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q92621|NU205_HUMAN Nuclear pore complex protein Nup205 OS=Hom... 45 2e-04
sp|A3DBI2|SYN_CLOTH Asparaginyl-tRNA synthetase OS=Clostridium t... 32 1.4
sp|Q7UHE1|SYN_RHOBA Asparaginyl-tRNA synthetase OS=Rhodopirellul... 30 7.0

>sp|Q92621|NU205_HUMAN Nuclear pore complex protein Nup205 OS=Homo
sapiens GN=NUP205 PE=1 SV=2
Length = 2012

Score = 45.1 bits (105), Expect = 2e-04
Identities = 35/139 (25%), Positives = 61/139 (43%), Gaps = 3/139 (2%)
Frame = +1

Query: 43 AELQKINLAAVKTDVVSLINVLTKDLSQGSEMGKAMACYXXXXXXXXXXXXXXXXXXXNR 222
++LQ+ N+A +++ +L+ V+ +D G E+G+ +A N
Sbjct: 1460 SKLQRENIAIIESYGAALMEVVCRDACDGHEIGRMLALALLDRIVSVDKQQQWLLYLSNS 1519

Query: 223 GLLQACLVD---VSTNSYQAVLLPSPASVRRLYTXXXXXXXXXRVGYQNKKRGAQTLFAM 393
G L+ LVD + Q++L P P ++ LYT RV ++GA L
Sbjct: 1520 GYLKV-LVDSLVEDDRTLQSLLTPQPPLLKALYTYESKMAFLTRVA--KIQQGALELLRS 1576

Query: 394 GVLQHLTSCRAIDVQLSED 450
GV+ L C+ D++ D
Sbjct: 1577 GVIVRLAQCQVYDMRPETD 1595


>sp|A3DBI2|SYN_CLOTH Asparaginyl-tRNA synthetase OS=Clostridium
thermocellum (strain ATCC 27405 / DSM 1237) GN=asnS PE=3
SV=1
Length = 464

Score = 32.3 bits (72), Expect = 1.4
Identities = 14/35 (40%), Positives = 22/35 (62%)
Frame = +1

Query: 406 HLTSCRAIDVQLSEDAKWEQVVKSGTGLRSQHDRH 510
H+T AID+ D K+E VK G L+++H+R+
Sbjct: 308 HVTYTEAIDILSKADQKFEYPVKWGNDLQTEHERY 342


>sp|Q7UHE1|SYN_RHOBA Asparaginyl-tRNA synthetase OS=Rhodopirellula
baltica GN=asnS PE=3 SV=1
Length = 490

Score = 30.0 bits (66), Expect = 7.0
Identities = 13/36 (36%), Positives = 24/36 (66%)
Frame = +1

Query: 403 QHLTSCRAIDVQLSEDAKWEQVVKSGTGLRSQHDRH 510
+H+T A++ L+ D K+E V GT L+++H+R+
Sbjct: 334 EHMTYTDAVERLLACDEKFEYPVNWGTDLQAEHERY 369


tr_hit_id A9TC03
Definition tr|A9TC03|A9TC03_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
Align length 174
Score (bit) 164.0
E-value 2.0e-39
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP911654|Adiantum capillus-veneris mRNA, clone:
YMU001_000007_F01.
(522 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|A9TC03|A9TC03_PHYPA Predicted protein OS=Physcomitrella paten... 164 2e-39
tr|Q9LU53|Q9LU53_ARATH Similarity to unknown protein OS=Arabidop... 86 1e-15
tr|A7PF31|A7PF31_VITVI Chromosome chr11 scaffold_13, whole genom... 84 3e-15
tr|A3A499|A3A499_ORYSJ Putative uncharacterized protein OS=Oryza... 71 3e-11
tr|B8ADU0|B8ADU0_ORYSI Putative uncharacterized protein OS=Oryza... 71 4e-11
tr|Q2HVT6|Q2HVT6_MEDTR Nuclear pore complex protein Nup205 , rel... 58 3e-07
tr|Q6ZQG1|Q6ZQG1_MOUSE MKIAA0225 protein (Fragment) OS=Mus muscu... 46 0.001
tr|Q6PDG0|Q6PDG0_MOUSE Nup205 protein (Fragment) OS=Mus musculus... 46 0.001
tr|Q6P9Y6|Q6P9Y6_MOUSE Nup205 protein (Fragment) OS=Mus musculus... 46 0.001
tr|Q6P9L5|Q6P9L5_MOUSE Nup205 protein (Fragment) OS=Mus musculus... 46 0.001
tr|Q6P486|Q6P486_HUMAN NUP205 protein (Fragment) OS=Homo sapiens... 45 0.002
tr|B4DE72|B4DE72_HUMAN cDNA FLJ50078, highly similar to Nuclear ... 45 0.002
tr|A6H8X3|A6H8X3_HUMAN Nucleoporin 205kDa (Nucleoporin 205kDa, i... 45 0.002
tr|Q016S4|Q016S4_OSTTA [S] KOG1835 Uncharacterized conserved pro... 43 0.008
tr|Q2HVT7|Q2HVT7_MEDTR Putative uncharacterized protein OS=Medic... 38 0.35
tr|B4GV00|B4GV00_DROPE GL13067 OS=Drosophila persimilis GN=GL130... 38 0.35
tr|Q29GU8|Q29GU8_DROPS GA11290 OS=Drosophila pseudoobscura pseud... 36 1.0
tr|B2UMZ4|B2UMZ4_AKKM8 ABC transporter related OS=Akkermansia mu... 35 2.2
tr|A4RZ30|A4RZ30_OSTLU Predicted protein OS=Ostreococcus lucimar... 35 3.0
tr|B4I7C8|B4I7C8_DROSE GM22997 (Fragment) OS=Drosophila sechelli... 33 8.6

>tr|A9TC03|A9TC03_PHYPA Predicted protein OS=Physcomitrella patens
subsp. patens GN=PHYPADRAFT_143304 PE=4 SV=1
Length = 1823

Score = 164 bits (416), Expect = 2e-39
Identities = 80/174 (45%), Positives = 114/174 (65%)
Frame = +1

Query: 1 GEQERDLEKLDKEQAELQKINLAAVKTDVVSLINVLTKDLSQGSEMGKAMACYXXXXXXX 180
G+++ ++EKLD++QAEL ++N + +K + L++V+ +D + GSE GKAMA Y
Sbjct: 1325 GDEDMEVEKLDRDQAELAQVNFSLLKRNAAPLVDVVARDATNGSETGKAMAYYVLDALLA 1384

Query: 181 XXXXXXXXXXXXNRGLLQACLVDVSTNSYQAVLLPSPASVRRLYTXXXXXXXXXRVGYQN 360
+RGLL +CL ++S+NSYQA+LLPS S+RRLYT RVG+ N
Sbjct: 1385 VDHHQVFLSQLQSRGLLHSCLAEISSNSYQAILLPSAESLRRLYTLESELALLLRVGFHN 1444

Query: 361 KKRGAQTLFAMGVLQHLTSCRAIDVQLSEDAKWEQVVKSGTGLRSQHDRHHQIV 522
+KRGAQTL+AMG L+HL+SCRAID L+ + VK G G+ +QHDR HQ+V
Sbjct: 1445 RKRGAQTLYAMGALRHLSSCRAIDAHLTVRRSFPSQVKVGVGMPNQHDRQHQLV 1498


>tr|Q9LU53|Q9LU53_ARATH Similarity to unknown protein OS=Arabidopsis
thaliana PE=4 SV=1
Length = 1837

Score = 85.9 bits (211), Expect = 1e-15
Identities = 48/143 (33%), Positives = 76/143 (53%), Gaps = 2/143 (1%)
Frame = +1

Query: 7 QERDLEKLDKEQAELQKINLAAVKTDVVSLINVLTKDLSQGSEMGKAMACYXXXXXXXXX 186
++ D++K+DKEQA+L + N +K + +++++ KD SQGSE GK ++ Y
Sbjct: 1325 EDLDIQKIDKEQADLARANFFIIKKEAQGILDLVIKDASQGSEFGKTISLYVLEALVCID 1384

Query: 187 XXXXXXXXXXNRGLLQACLVDVSTNSYQ--AVLLPSPASVRRLYTXXXXXXXXXRVGYQN 360
+RG +++CL +S SYQ LL S +R T R+ ++
Sbjct: 1385 HERYFLSQLQSRGFIRSCLGSISNISYQDGTHLLESQ---QRACTLEAELALLLRISHKY 1441

Query: 361 KKRGAQTLFAMGVLQHLTSCRAI 429
K G Q LF+MG L+H+ SCRAI
Sbjct: 1442 GKSGGQVLFSMGALEHIASCRAI 1464


>tr|A7PF31|A7PF31_VITVI Chromosome chr11 scaffold_13, whole genome
shotgun sequence OS=Vitis vinifera GN=GSVIVT00016887001
PE=4 SV=1
Length = 1585

Score = 84.3 bits (207), Expect = 3e-15
Identities = 46/145 (31%), Positives = 81/145 (55%)
Frame = +1

Query: 7 QERDLEKLDKEQAELQKINLAAVKTDVVSLINVLTKDLSQGSEMGKAMACYXXXXXXXXX 186
++ DL K+DKEQAEL + N + ++ + ++++++ KD +QGSE GK ++ Y
Sbjct: 1387 EDLDLLKIDKEQAELAQANFSILRKEAQAILDLVIKDATQGSESGKTISLYVLDALICID 1446

Query: 187 XXXXXXXXXXNRGLLQACLVDVSTNSYQAVLLPSPASVRRLYTXXXXXXXXXRVGYQNKK 366
+RG L++CL+++S S Q S S++R T R+ ++ K
Sbjct: 1447 HERFFLNQLQSRGFLRSCLMNISNISLQDG-GRSLDSLQRTCTLEAELALVLRISHKYGK 1505

Query: 367 RGAQTLFAMGVLQHLTSCRAIDVQL 441
GAQ LF+MG L+H+ SC+ ++ Q+
Sbjct: 1506 SGAQILFSMGALEHIASCKVVNFQM 1530


>tr|A3A499|A3A499_ORYSJ Putative uncharacterized protein OS=Oryza
sativa subsp. japonica GN=OsJ_005621 PE=4 SV=1
Length = 1960

Score = 71.2 bits (173), Expect = 3e-11
Identities = 46/162 (28%), Positives = 79/162 (48%), Gaps = 1/162 (0%)
Frame = +1

Query: 4 EQERDLEKLDKEQAELQKINLAAVKTDVVSLINVLTKDLSQGSEMGKAMACYXXXXXXXX 183
+ E L+K+ KEQ EL + N + ++ + ++I+++ KD GSE GKA++ Y
Sbjct: 1362 DDELGLQKVLKEQNELARSNFSIIRKEAQAVIDLVAKDAIHGSEAGKAISFYVLDSLISI 1421

Query: 184 XXXXXXXXXXXNRGLLQACLVDVSTNSYQAVLLPSPASVRRLYTXXXXXXXXXRVGYQNK 363
+RG+L++CL DV+ + S +S +R T R+ +
Sbjct: 1422 DHDKYFLNQIQSRGILRSCLSDVNNYLSKEASFSSESS-QRFCTIDAQLSLLLRISHHYG 1480

Query: 364 KRGAQTLFAMGVLQHLTSCRAIDVQLSEDAKW-EQVVKSGTG 486
K G+Q L +MG L +L+SC + Q +++ VVK G
Sbjct: 1481 KHGSQILLSMGALHNLSSCNLMGSQKKANSRLNSNVVKERAG 1522


>tr|B8ADU0|B8ADU0_ORYSI Putative uncharacterized protein OS=Oryza
sativa subsp. indica GN=OsI_06283 PE=4 SV=1
Length = 1814

Score = 70.9 bits (172), Expect = 4e-11
Identities = 43/150 (28%), Positives = 74/150 (49%)
Frame = +1

Query: 4 EQERDLEKLDKEQAELQKINLAAVKTDVVSLINVLTKDLSQGSEMGKAMACYXXXXXXXX 183
+ E L+K+ KEQ EL + N + ++ + ++I+++ KD GSE GKA++ Y
Sbjct: 1328 DDELGLQKVLKEQNELARSNFSIIRKEAQAVIDLVAKDAIHGSEAGKAISFYVLDSLISI 1387

Query: 184 XXXXXXXXXXXNRGLLQACLVDVSTNSYQAVLLPSPASVRRLYTXXXXXXXXXRVGYQNK 363
+RG+L++CL DV+ + S +S +R T R+ +
Sbjct: 1388 DHDKYFLNQIQSRGILRSCLSDVNNYLSKEASFSSESS-QRFCTIDAQLSLLLRISHHYG 1446

Query: 364 KRGAQTLFAMGVLQHLTSCRAIDVQLSEDA 453
K G+Q L +MG L +L+SC + Q D+
Sbjct: 1447 KHGSQILLSMGALHNLSSCNLMGSQKKVDS 1476


>tr|Q2HVT6|Q2HVT6_MEDTR Nuclear pore complex protein Nup205 , related
(Fragment) OS=Medicago truncatula
GN=MtrDRAFT_AC148343g19v2 PE=4 SV=2
Length = 858

Score = 58.2 bits (139), Expect = 3e-07
Identities = 29/89 (32%), Positives = 48/89 (53%)
Frame = +1

Query: 16 DLEKLDKEQAELQKINLAAVKTDVVSLINVLTKDLSQGSEMGKAMACYXXXXXXXXXXXX 195
DL K+DKEQAEL + N + ++ + S+++++ KD + GSE GK ++ Y
Sbjct: 761 DLPKIDKEQAELARANFSTLRKEAQSILDLVIKDATHGSESGKTISLYVLDALICIDHER 820

Query: 196 XXXXXXXNRGLLQACLVDVSTNSYQAVLL 282
+RG L++CL +S S Q +L
Sbjct: 821 YFLSQLQSRGFLRSCLTAISNISNQVFIL 849


>tr|Q6ZQG1|Q6ZQG1_MOUSE MKIAA0225 protein (Fragment) OS=Mus musculus
GN=Nup205 PE=2 SV=1
Length = 2067

Score = 46.2 bits (108), Expect = 0.001
Identities = 34/140 (24%), Positives = 63/140 (45%), Gaps = 3/140 (2%)
Frame = +1

Query: 43 AELQKINLAAVKTDVVSLINVLTKDLSQGSEMGKAMACYXXXXXXXXXXXXXXXXXXXNR 222
++LQ+ N+A +++ +L+ V+ +D G E+G+ +A N
Sbjct: 1519 SKLQRENMAIIESYGAALMEVVCRDACDGHEIGRMLALALLDRIVSVDKQHQWLLYLSNS 1578

Query: 223 GLLQA---CLVDVSTNSYQAVLLPSPASVRRLYTXXXXXXXXXRVGYQNKKRGAQTLFAM 393
G L+ LVD + Q++L P P ++ LYT RV +++G+ L
Sbjct: 1579 GYLKVLVDSLVD-DDRTLQSLLTPQPPLLKALYTYESKMAFLTRVA--KEQQGSAELLRS 1635

Query: 394 GVLQHLTSCRAIDVQLSEDA 453
GV+ L C+ D++ D+
Sbjct: 1636 GVIVRLAQCQVYDMRPEMDS 1655


>tr|Q6PDG0|Q6PDG0_MOUSE Nup205 protein (Fragment) OS=Mus musculus
GN=Nup205 PE=2 SV=1
Length = 2003

Score = 46.2 bits (108), Expect = 0.001
Identities = 34/140 (24%), Positives = 63/140 (45%), Gaps = 3/140 (2%)
Frame = +1

Query: 43 AELQKINLAAVKTDVVSLINVLTKDLSQGSEMGKAMACYXXXXXXXXXXXXXXXXXXXNR 222
++LQ+ N+A +++ +L+ V+ +D G E+G+ +A N
Sbjct: 1455 SKLQRENMAIIESYGAALMEVVCRDACDGHEIGRMLALALLDRIVSVDKQHQWLLYLSNS 1514

Query: 223 GLLQA---CLVDVSTNSYQAVLLPSPASVRRLYTXXXXXXXXXRVGYQNKKRGAQTLFAM 393
G L+ LVD + Q++L P P ++ LYT RV +++G+ L
Sbjct: 1515 GYLKVLVDSLVD-DDRTLQSLLTPQPPLLKALYTYESKMAFLTRVA--KEQQGSAELLRS 1571

Query: 394 GVLQHLTSCRAIDVQLSEDA 453
GV+ L C+ D++ D+
Sbjct: 1572 GVIVRLAQCQVYDMRPEMDS 1591


>tr|Q6P9Y6|Q6P9Y6_MOUSE Nup205 protein (Fragment) OS=Mus musculus
GN=Nup205 PE=2 SV=1
Length = 573

Score = 46.2 bits (108), Expect = 0.001
Identities = 34/140 (24%), Positives = 63/140 (45%), Gaps = 3/140 (2%)
Frame = +1

Query: 43 AELQKINLAAVKTDVVSLINVLTKDLSQGSEMGKAMACYXXXXXXXXXXXXXXXXXXXNR 222
++LQ+ N+A +++ +L+ V+ +D G E+G+ +A N
Sbjct: 25 SKLQRENMAIIESYGAALMEVVCRDACDGHEIGRMLALALLDRIVSVDKQHQWLLYLSNS 84

Query: 223 GLLQA---CLVDVSTNSYQAVLLPSPASVRRLYTXXXXXXXXXRVGYQNKKRGAQTLFAM 393
G L+ LVD + Q++L P P ++ LYT RV +++G+ L
Sbjct: 85 GYLKVLVDSLVD-DDRTLQSLLTPQPPLLKALYTYESKMAFLTRVA--KEQQGSAELLRS 141

Query: 394 GVLQHLTSCRAIDVQLSEDA 453
GV+ L C+ D++ D+
Sbjct: 142 GVIVRLAQCQVYDMRPEMDS 161


>tr|Q6P9L5|Q6P9L5_MOUSE Nup205 protein (Fragment) OS=Mus musculus
GN=Nup205 PE=2 SV=1
Length = 1851

Score = 46.2 bits (108), Expect = 0.001
Identities = 34/140 (24%), Positives = 63/140 (45%), Gaps = 3/140 (2%)
Frame = +1

Query: 43 AELQKINLAAVKTDVVSLINVLTKDLSQGSEMGKAMACYXXXXXXXXXXXXXXXXXXXNR 222
++LQ+ N+A +++ +L+ V+ +D G E+G+ +A N
Sbjct: 1303 SKLQRENMAIIESYGAALMEVVCRDACDGHEIGRMLALALLDRIVSVDKQHQWLLYLSNS 1362

Query: 223 GLLQA---CLVDVSTNSYQAVLLPSPASVRRLYTXXXXXXXXXRVGYQNKKRGAQTLFAM 393
G L+ LVD + Q++L P P ++ LYT RV +++G+ L
Sbjct: 1363 GYLKVLVDSLVD-DDRTLQSLLTPQPPLLKALYTYESKMAFLTRVA--KEQQGSAELLRS 1419

Query: 394 GVLQHLTSCRAIDVQLSEDA 453
GV+ L C+ D++ D+
Sbjct: 1420 GVIVRLAQCQVYDMRPEMDS 1439