| BP911655 |
| Clone id |
YMU001_000007_F02 |
| Library |
YMU01 |
| Length |
524 |
| Definition |
Adiantum capillus-veneris mRNA. clone: YMU001_000007_F02. |
| Accession |
BP911655 |
| Tissue type |
prothallium |
| Developmental stage |
- |
| Contig ID |
- |
| Sequence |
GAATTCGCCCTTGAGATATTACCTGCAGGTACTCCAGAACTCACAATGGTGAGTGGATTT
ATTGATAGATATTCCTGTCATGATCATAATGAGCCATGACCACTTCATACATCGGCTGAT
GAGGGAGCCACCCATTTACCAAAGATGAGCCCACACTATCGCCTTTGCACGTATGTGATT
GTGGCCCCCAAGGTCCTCTTCCACTCCTCTGATTCTTTCTTGTCTTCCAAATGTGAAAGT
AGAAGTACCTCATGATTTTTGTAGCAATGCGCAGTGTATGGTACTTGAACTTCTTCCCTC
CCAAGAAGAGATCGTTCTTGTAGAATTCTATGTTCTAGGTCATTTGGACCCATTTAAATA
TCTTACCTACAAGACCACAGATCGTTGGACACTCCTTGAATAGGTGAGAGAGGTCTTCAC
AAGCCATTCTACATTGTGAGCATCTATCTGGACCAATTCCCCTGACAAGGACCTTCACTC
TAGTTGGCATGGCTCCCCATAGCACCTTCACCTTCATTCCATCC |
| ■■Homology search results ■■ |
- |
| Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
| sp_hit_id |
Q10669 |
| Definition |
sp|Q10669|MED23_CAEEL Mediator of RNA polymerase II transcription subunit 23 OS=Caenorhabditis elegans |
| Align length |
38 |
| Score (bit) |
27.7 |
| E-value |
2.7 |
| Report |
 BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BP911655|Adiantum capillus-veneris mRNA, clone:
YMU001_000007_F02.
(524 letters)
Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sp|Q10669|MED23_CAEEL Mediator of RNA polymerase II transcriptio... 28 2.7
sp|P15622|ZN250_HUMAN Zinc finger protein 250 OS=Homo sapiens GN... 31 3.1
sp|Q9RP48|GLGE_MYCS2 Putative glucanase glgE OS=Mycobacterium sm... 31 3.1
sp|A6NNF4|YS047_HUMAN Zinc finger protein LOC730087 OS=Homo sapi... 30 5.3
sp|P51839|GUC2D_RAT Olfactory guanylyl cyclase GC-D OS=Rattus no... 30 5.3
sp|P47362|Y116_MYCGE Uncharacterized protein MG116 OS=Mycoplasma... 30 7.0
sp|Q8BH86|CN159_MOUSE UPF0317 protein C14orf159 homolog, mitocho... 30 7.0
sp|Q63191|AEGP_RAT Apical endosomal glycoprotein OS=Rattus norve... 30 7.0
sp|Q8TAQ5|ZN420_HUMAN Zinc finger protein 420 OS=Homo sapiens GN... 30 9.1
sp|A2VDQ7|ZN420_BOVIN Zinc finger protein 420 OS=Bos taurus GN=Z... 30 9.1
sp|P52744|ZN138_HUMAN Zinc finger protein 138 OS=Homo sapiens GN... 30 9.1
>sp|Q10669|MED23_CAEEL Mediator of RNA polymerase II transcription
subunit 23 OS=Caenorhabditis elegans GN=sur-2 PE=1 SV=1
Length = 1587
Score = 27.7 bits (60), Expect(2) = 2.7
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = -2
Query: 295 KKFKYHTLRIATKIMRYFYFHIWKTRKNQRSGRGPWGP 182
+K ++TLR+ +R +Y + W T K RS R +GP
Sbjct: 1271 EKDLWYTLRLVMPYLRRYYEN-WDTAKQMRSQRENFGP 1307
Score = 22.3 bits (46), Expect(2) = 2.7
Identities = 8/29 (27%), Positives = 14/29 (48%)
Frame = -3
Query: 87 MIMTGISINKSTHHCEFWSTCR*YLKGEF 1
M G+ I H C+ + C+ + G+F
Sbjct: 1321 MAEEGVEIVYEQHLCDLFYNCKYFFAGDF 1349
>sp|P15622|ZN250_HUMAN Zinc finger protein 250 OS=Homo sapiens
GN=ZNF250 PE=2 SV=3
Length = 560
Score = 31.2 bits (69), Expect = 3.1
Identities = 17/42 (40%), Positives = 20/42 (47%), Gaps = 7/42 (16%)
Frame = -2
Query: 460 GIGPDRCSQCRMACEDLSHLFK-------ECPTICGLVGKIF 356
G P C +CR A LSHL + E P +C L GK F
Sbjct: 279 GEKPHECLECRKAFTQLSHLIQHQRIHTGERPYVCPLCGKAF 320
>sp|Q9RP48|GLGE_MYCS2 Putative glucanase glgE OS=Mycobacterium
smegmatis GN=glgE PE=1 SV=1
Length = 697
Score = 31.2 bits (69), Expect = 3.1
Identities = 17/55 (30%), Positives = 25/55 (45%)
Frame = +2
Query: 335 LGHLDPFKYLTYKTTDRWTLLE*VREVFTSHSTL*ASIWTNSPDKDLHSSWHGSP 499
LG + Y T++T +W L E E+ ++W N+PD S HG P
Sbjct: 457 LGFTQSYTYFTWRTA-KWELTEFGEEIAKYADHARPNLWVNTPDILHESLQHGGP 510
>sp|A6NNF4|YS047_HUMAN Zinc finger protein LOC730087 OS=Homo sapiens
PE=2 SV=3
Length = 738
Score = 30.4 bits (67), Expect = 5.3
Identities = 19/58 (32%), Positives = 23/58 (39%), Gaps = 7/58 (12%)
Frame = -2
Query: 502 LWGAMPTRVKVLVRGIGPDRCSQCRMACEDLSHLFK-------ECPTICGLVGKIFKW 350
+W + TR K L G P +C +C A HL E P C GK F W
Sbjct: 323 VWSSTLTRHKRLHSGEKPYKCEECAKAFSQFGHLTTHRIIHTGEKPYKCEECGKAFIW 380
>sp|P51839|GUC2D_RAT Olfactory guanylyl cyclase GC-D OS=Rattus
norvegicus GN=Gucy2d PE=2 SV=1
Length = 1110
Score = 30.4 bits (67), Expect = 5.3
Identities = 12/25 (48%), Positives = 14/25 (56%)
Frame = -2
Query: 232 IWKTRKNQRSGRGPWGPQSHTCKGD 158
+W + R RGPWGP T KGD
Sbjct: 717 LWTAPELLRGPRGPWGPGKATFKGD 741
>sp|P47362|Y116_MYCGE Uncharacterized protein MG116 OS=Mycoplasma
genitalium GN=MG116 PE=4 SV=1
Length = 251
Score = 30.0 bits (66), Expect = 7.0
Identities = 14/52 (26%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Frame = -1
Query: 317 ERSLLGREEVQV-PYTAHCYKNHEVLLLSHLEDKKESEEWKRTLGATITYVQ 165
E++L+ + + V PY + ++ SHL+DK WK++ + Y Q
Sbjct: 139 EKALIEKAAIAVLPYNGTLMNGNNDVVFSHLQDKNRFNYWKQSKAYEVQYPQ 190
>sp|Q8BH86|CN159_MOUSE UPF0317 protein C14orf159 homolog,
mitochondrial OS=Mus musculus PE=2 SV=1
Length = 617
Score = 30.0 bits (66), Expect = 7.0
Identities = 16/52 (30%), Positives = 23/52 (44%), Gaps = 8/52 (15%)
Frame = +2
Query: 182 WPPRSSSTPLILSCL--------PNVKVEVPHDFCSNAQCMVLELLPSQEEI 313
WP +S ++SC P V VP D S+A C+ E++P I
Sbjct: 227 WPSPLTSLEAVISCKAPLAFASPPGCMVMVPKDTASSASCLTPEMVPEVHAI 278
>sp|Q63191|AEGP_RAT Apical endosomal glycoprotein OS=Rattus
norvegicus GN=Mamdc4 PE=1 SV=1
Length = 1216
Score = 30.0 bits (66), Expect = 7.0
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = -2
Query: 232 IWKTRKNQRSGRGPWGPQSHTCKGDSVGSSLV 137
+W TR+N SG GPWGP G + G +V
Sbjct: 833 LW-TRQNNASGLGPWGPWIDHTTGTAQGHYMV 863
>sp|Q8TAQ5|ZN420_HUMAN Zinc finger protein 420 OS=Homo sapiens
GN=ZNF420 PE=1 SV=1
Length = 688
Score = 29.6 bits (65), Expect = 9.1
Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 7/54 (12%)
Frame = -2
Query: 496 GAMPTRVKVLVRGIGPDRCSQCRMACEDLSHLFK-------ECPTICGLVGKIF 356
G+ T+ + + G P C +CRMA SHL + E P +C GK F
Sbjct: 487 GSQLTQHQRIHTGEKPYECKECRMAFTQSSHLSQHQRLHTGEKPYVCNECGKAF 540
>sp|A2VDQ7|ZN420_BOVIN Zinc finger protein 420 OS=Bos taurus
GN=ZNF420 PE=2 SV=1
Length = 687
Score = 29.6 bits (65), Expect = 9.1
Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 7/54 (12%)
Frame = -2
Query: 496 GAMPTRVKVLVRGIGPDRCSQCRMACEDLSHLFK-------ECPTICGLVGKIF 356
G+ T+ + + G P C +CRMA SHL + E P +C GK F
Sbjct: 486 GSQLTQHQRIHTGEKPYECKECRMAFTQSSHLSQHQRLHTGEKPYVCNECGKAF 539
|
| TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
| tr_hit_id |
O81630 |
| Definition |
tr|O81630|O81630_ARATH F8M12.22 protein OS=Arabidopsis thaliana |
| Align length |
98 |
| Score (bit) |
36.6 |
| E-value |
0.78 |
| Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BP911655|Adiantum capillus-veneris mRNA, clone:
YMU001_000007_F02.
(524 letters)
Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
tr|O81630|O81630_ARATH F8M12.22 protein OS=Arabidopsis thaliana ... 37 0.78
tr|A5AMF5|A5AMF5_VITVI Putative uncharacterized protein OS=Vitis... 36 1.3
tr|A5BQI4|A5BQI4_VITVI Putative uncharacterized protein OS=Vitis... 35 2.3
tr|A5BP42|A5BP42_VITVI Putative uncharacterized protein (Fragmen... 35 2.3
tr|A5AIV6|A5AIV6_VITVI Putative uncharacterized protein OS=Vitis... 35 2.3
tr|Q9LDL8|Q9LDL8_ARATH Putative uncharacterized protein AT4g0883... 34 3.9
tr|Q2HVU8|Q2HVU8_MEDTR Polynucleotidyl transferase, Ribonuclease... 34 3.9
tr|A5BV95|A5BV95_VITVI Putative uncharacterized protein OS=Vitis... 34 3.9
tr|A2Q2E7|A2Q2E7_MEDTR Polynucleotidyl transferase, Ribonuclease... 34 3.9
tr|Q2HUC4|Q2HUC4_MEDTR Polynucleotidyl transferase, Ribonuclease... 34 5.1
tr|A5C9Z3|A5C9Z3_VITVI Putative uncharacterized protein OS=Vitis... 34 5.1
tr|A5B0J0|A5B0J0_VITVI Putative uncharacterized protein OS=Vitis... 33 6.6
tr|A2Q5G9|A2Q5G9_MEDTR Polynucleotidyl transferase, Ribonuclease... 33 6.6
tr|A2Q307|A2Q307_MEDTR Probable reverse transcriptase At2g02650-... 33 6.6
tr|A1ZJ64|A1ZJ64_9SPHI Signal peptidase I OS=Microscilla marina ... 33 8.6
tr|Q3E7V8|Q3E7V8_ARATH Uncharacterized protein At1g43730.1 OS=Ar... 33 8.6
tr|A7NYD6|A7NYD6_VITVI Chromosome chr6 scaffold_3, whole genome ... 33 8.6
tr|A4Q7N6|A4Q7N6_MEDTR Putative uncharacterized protein OS=Medic... 33 8.6
tr|A8XK28|A8XK28_CAEBR Putative uncharacterized protein OS=Caeno... 33 8.6
>tr|O81630|O81630_ARATH F8M12.22 protein OS=Arabidopsis thaliana
GN=F8M12.22 PE=4 SV=1
Length = 1662
Score = 36.6 bits (83), Expect = 0.78
Identities = 28/98 (28%), Positives = 48/98 (48%), Gaps = 4/98 (4%)
Frame = -2
Query: 493 AMPTRVKVLVRGIGPD-RCSQCRMACEDLSHLFKECPTICGLVG-KIFKWVQ-MT*NIEF 323
A+PTR ++L RG+ D C +C E ++H+ CP + G F W+ T + +
Sbjct: 1382 ALPTRSRLLTRGMDIDPHCPRCPTEEETINHVLFTCPYAASIWGLSNFPWLPGHTFSQDT 1441
Query: 322 YKNDLFLGGKKFKYHTLRIATKIMRYF-YFHIWKTRKN 212
+N FL F +TL ++ ++ + +WK R N
Sbjct: 1442 EENISFL-INSFSNNTLNTEQRLAPFWLIWRLWKARNN 1478
>tr|A5AMF5|A5AMF5_VITVI Putative uncharacterized protein OS=Vitis
vinifera GN=VITISV_037097 PE=4 SV=1
Length = 943
Score = 35.8 bits (81), Expect = 1.3
Identities = 22/76 (28%), Positives = 32/76 (42%), Gaps = 21/76 (27%)
Frame = -2
Query: 517 MKVKVLWGA-MPTRVKVLV--------------------RGIGPDRCSQCRMACEDLSHL 401
+ K LW + +P++VK LV + + P C C+ E + HL
Sbjct: 819 LPAKFLWSSKVPSKVKALVWIVAHGKVNTNDKLQLRRPYKSLCPQWCILCKGNGESIDHL 878
Query: 400 FKECPTICGLVGKIFK 353
F CP GL K+FK
Sbjct: 879 FLHCPVTIGLWNKLFK 894
>tr|A5BQI4|A5BQI4_VITVI Putative uncharacterized protein OS=Vitis
vinifera GN=VITISV_030910 PE=4 SV=1
Length = 971
Score = 35.0 bits (79), Expect = 2.3
Identities = 21/76 (27%), Positives = 31/76 (40%), Gaps = 21/76 (27%)
Frame = -2
Query: 517 MKVKVLWGA-MPTRVKVLV--------------------RGIGPDRCSQCRMACEDLSHL 401
+ K LW + +P++VK L + + P C C+ E + HL
Sbjct: 703 LPAKFLWSSKVPSKVKALAWIVAHGKVNTNDKLQLRRPYKALCPQWCILCKANGESIDHL 762
Query: 400 FKECPTICGLVGKIFK 353
F CP GL K+FK
Sbjct: 763 FLHCPVTIGLWNKLFK 778
>tr|A5BP42|A5BP42_VITVI Putative uncharacterized protein (Fragment)
OS=Vitis vinifera GN=VITISV_035350 PE=4 SV=1
Length = 306
Score = 35.0 bits (79), Expect = 2.3
Identities = 21/76 (27%), Positives = 31/76 (40%), Gaps = 21/76 (27%)
Frame = -2
Query: 517 MKVKVLWGA-MPTRVKVLV--------------------RGIGPDRCSQCRMACEDLSHL 401
+ K LW + +P++VK L + + P C C+ E + HL
Sbjct: 143 LPAKFLWSSKVPSKVKALAWIVAHGKVNTNDKLQLRRPYKALCPQWCILCKANGESIDHL 202
Query: 400 FKECPTICGLVGKIFK 353
F CP GL K+FK
Sbjct: 203 FLHCPVTIGLWNKLFK 218
>tr|A5AIV6|A5AIV6_VITVI Putative uncharacterized protein OS=Vitis
vinifera GN=VITISV_028992 PE=4 SV=1
Length = 298
Score = 35.0 bits (79), Expect = 2.3
Identities = 30/127 (23%), Positives = 50/127 (39%), Gaps = 24/127 (18%)
Frame = -2
Query: 517 MKVKVLWGA-MPTRVKVLV--------------------RGIGPDRCSQCRMACEDLSHL 401
+ K LW + +P++VK L + + P C C+ E + HL
Sbjct: 122 LPAKFLWSSKVPSKVKALAWIVAHGKVNTNDKLQLRRPYKSLCPQWCILCKGNGESIDHL 181
Query: 400 FKECPTICGLVGKIFKWVQMT*NIEFYKNDLFLGGKKFKYHTLRIAT---KIMRYFYFHI 230
F CP GL K+FK + + D+ + K ++LR T F + +
Sbjct: 182 FLHCPVTIGLWNKLFKLAGLVWVLSRSFEDMLVIAFKGLGNSLRGKTLWQVACLTFVWIV 241
Query: 229 WKTRKNQ 209
W+ R N+
Sbjct: 242 WQERNNR 248
>tr|Q9LDL8|Q9LDL8_ARATH Putative uncharacterized protein AT4g08830
OS=Arabidopsis thaliana GN=AT4g08830 PE=2 SV=1
Length = 947
Score = 34.3 bits (77), Expect = 3.9
Identities = 19/60 (31%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Frame = -2
Query: 481 RVKVLVRGIGPDR-CSQCRMACEDLSHLFKECPTICGLVGKIFKWVQMT*NIEFYKNDLF 305
RVK + IG C C+ E + H+ K+CP+I G+ ++ VQ+ + +F+ LF
Sbjct: 704 RVKTFLWHIGDTSVCQVCKGGDETILHVLKDCPSIAGIWRRL---VQVQRSYDFFNGSLF 760
>tr|Q2HVU8|Q2HVU8_MEDTR Polynucleotidyl transferase, Ribonuclease H
fold OS=Medicago truncatula GN=MtrDRAFT_AC148343g26v2
PE=4 SV=2
Length = 612
Score = 34.3 bits (77), Expect = 3.9
Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Frame = -2
Query: 508 KVLWGAMPTRVKVLVRGIG-PDRCSQCRMACEDLSHLFKEC 389
+V G +PTR K+ +G+ P+ C C ED+ HLF C
Sbjct: 279 RVCRGVLPTRNKLRDKGVQCPEACVNCSTTSEDVKHLFCVC 319
>tr|A5BV95|A5BV95_VITVI Putative uncharacterized protein OS=Vitis
vinifera GN=VITISV_026478 PE=4 SV=1
Length = 1776
Score = 34.3 bits (77), Expect = 3.9
Identities = 21/76 (27%), Positives = 31/76 (40%), Gaps = 21/76 (27%)
Frame = -2
Query: 517 MKVKVLWGA-MPTRVKVLV--------------------RGIGPDRCSQCRMACEDLSHL 401
+ K LW + +P++VK L + + P C C+ E + HL
Sbjct: 1600 LPAKFLWSSKVPSKVKALAWIVAHGKVNTNDKLQLRRPYKSLCPQWCILCKGNGESIDHL 1659
Query: 400 FKECPTICGLVGKIFK 353
F CP GL K+FK
Sbjct: 1660 FLHCPVTIGLWNKLFK 1675
>tr|A2Q2E7|A2Q2E7_MEDTR Polynucleotidyl transferase, Ribonuclease H
fold OS=Medicago truncatula GN=MtrDRAFT_AC150776g27v2
PE=4 SV=1
Length = 519
Score = 34.3 bits (77), Expect = 3.9
Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Frame = -2
Query: 508 KVLWGAMPTRVKVLVRGIG-PDRCSQCRMACEDLSHLFKEC 389
+V G +PTR K+ +G+ P+ C C ED+ HLF C
Sbjct: 186 RVCRGVLPTRNKLRDKGVQCPEACVNCSTTSEDVKHLFCVC 226
>tr|Q2HUC4|Q2HUC4_MEDTR Polynucleotidyl transferase, Ribonuclease H
fold OS=Medicago truncatula GN=MtrDRAFT_AC149204g14v2
PE=4 SV=1
Length = 393
Score = 33.9 bits (76), Expect = 5.1
Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 5/47 (10%)
Frame = -2
Query: 508 KVLWGA----MPTRVKVLVRGIG-PDRCSQCRMACEDLSHLFKECPT 383
K++W PTRV+++ RG+ P C +C ED H+F C T
Sbjct: 70 KLVWRVCRECFPTRVRLISRGVNCPSACVKCEDPHEDCYHIFFHCRT 116
|