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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP911666
Clone id YMU001_000007_G04
Library
Length 492
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000007_G04.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
ATGCGCGGCCGCGAATTTAAATTACAACAGAAGCATGTCCGATCCAAGAATGACTTCTTT
ATGACAAGAGAGTGCAACACAAGGAGCAACACCGCCATGCGTACTATTGCATAACACCAT
TGACAATGTACATTTCTTTGCCATGCTCAAAGGGCAGCAGTAATTATACATACTTAAGAG
ACTACTTCGCTAGAAATTATTTGGCATTCAGGGGATGCTACCAGAGTACAGCCAAAAGAC
CAATACTCCAGGTCCTTCCCCACAATTATAATCCCCACAAGCGGCAAGTCCCTATGCGCA
TCACTTCTTTGACTCCCCATGATTTTGTAAAGGGCGTTGCAGAATAGATATATACACCTG
CATACAAAAGCCCTTCTCCTCTATACACAACAAACTCATATTCATACCTGGAACGCGTTG
CTAGACAATGCAAGCATCCATTCATATCTCGTATTACCCCGTGATACTTGGCGCTCTTTT
TATGAGACTGGA
■■Homology search results ■■ -
sp_hit_id P50901
Definition sp|P50901|HOX3_BRAFL Homeobox protein HOX3 OS=Branchiostoma floridae
Align length 60
Score (bit) 33.1
E-value 0.65
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP911666|Adiantum capillus-veneris mRNA, clone:
YMU001_000007_G04.
         (475 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P50901|HOX3_BRAFL Homeobox protein HOX3 OS=Branchiostoma flor...    33   0.65 
sp|Q9ZK38|DEOD_HELPJ Purine nucleoside phosphorylase deoD-type O...    32   1.4  
sp|Q1CS88|DEOD_HELPH Purine nucleoside phosphorylase deoD-type O...    32   1.4  
sp|P56463|DEOD_HELPY Purine nucleoside phosphorylase deoD-type O...    32   1.9  
sp|Q894Z3|DEOD_CLOTE Purine nucleoside phosphorylase deoD-type O...    31   2.4  
sp|A6VYJ1|SECA_MARMS Protein translocase subunit secA OS=Marinom...    31   3.2  
sp|A0Q1A0|DEOD_CLONN Purine nucleoside phosphorylase deoD-type O...    30   5.4  
sp|Q0HXQ1|DEOD_SHESR Purine nucleoside phosphorylase deoD-type O...    30   7.1  
sp|Q0HLE7|DEOD_SHESM Purine nucleoside phosphorylase deoD-type O...    30   7.1  
sp|Q12QG0|DEOD_SHEDO Purine nucleoside phosphorylase deoD-type O...    30   7.1  
sp|A1S477|DEOD_SHEAM Purine nucleoside phosphorylase deoD-type O...    30   7.1  
sp|Q483Q8|DEOD_COLP3 Purine nucleoside phosphorylase deoD-type O...    30   7.1  
sp|A6M0X2|DEOD_CLOB8 Purine nucleoside phosphorylase deoD-type O...    30   7.1  
sp|Q8EHK0|DEOD2_SHEON Purine nucleoside phosphorylase deoD-type ...    30   7.1  
sp|Q7VSZ2|HIS1_BORPE ATP phosphoribosyltransferase OS=Bordetella...    29   9.3  
sp|Q7W2Y5|HIS1_BORPA ATP phosphoribosyltransferase OS=Bordetella...    29   9.3  
sp|Q7WDY5|HIS1_BORBR ATP phosphoribosyltransferase OS=Bordetella...    29   9.3  
sp|Q5KZM1|DEOD_GEOKA Purine nucleoside phosphorylase deoD-type O...    29   9.3  
sp|Q7NRT2|DEOD_CHRVO Purine nucleoside phosphorylase deoD-type O...    29   9.3  
sp|Q7MI41|DEOD1_VIBVY Purine nucleoside phosphorylase deoD-type ...    29   9.3  
sp|Q8DBS9|DEOD1_VIBVU Purine nucleoside phosphorylase deoD-type ...    29   9.3  
sp|A0P8Z4|NR6A1_PIG Nuclear receptor subfamily 6 group A member ...    29   9.4  
sp|Q15406|NR6A1_HUMAN Nuclear receptor subfamily 6 group A membe...    29   9.4  

>sp|P50901|HOX3_BRAFL Homeobox protein HOX3 OS=Branchiostoma
           floridae PE=2 SV=1
          Length = 411

 Score = 33.1 bits (74), Expect = 0.65
 Identities = 21/60 (35%), Positives = 28/60 (46%), Gaps = 5/60 (8%)
 Frame = +1

Query: 199 CYQSTAKRPILQVLPH-----NYNPHKRQVPMRITSLTPHDFVKGVAE*IYTPAYKSPSP 363
           CYQS          PH     N+ PH RQ P  +T+  P   ++ V++  YTP    PSP
Sbjct: 292 CYQSNHSPCPPSSAPHPVPMGNHVPHPRQGPPHMTNGLPASPLEVVSQRQYTPPAPGPSP 351


>sp|Q9ZK38|DEOD_HELPJ Purine nucleoside phosphorylase deoD-type
           OS=Helicobacter pylori J99 GN=deoD PE=3 SV=1
          Length = 233

 Score = 32.0 bits (71), Expect = 1.4
 Identities = 17/56 (30%), Positives = 30/56 (53%)
 Frame = -3

Query: 434 RDMNGCLHCLATRSRYEYEFVVYRGEGLLYAGVYIYSATPFTKSWGVKEVMRIGTC 267
           +++    + L    +Y+ + +   G G+  A   IY  T   K++ VKE++RIGTC
Sbjct: 37  KEITNVRNMLGFSGKYKGKGISLMGHGMGIASCTIY-VTELIKTYQVKELLRIGTC 91


>sp|Q1CS88|DEOD_HELPH Purine nucleoside phosphorylase deoD-type
           OS=Helicobacter pylori (strain HPAG1) GN=deoD PE=3 SV=1
          Length = 233

 Score = 32.0 bits (71), Expect = 1.4
 Identities = 17/56 (30%), Positives = 30/56 (53%)
 Frame = -3

Query: 434 RDMNGCLHCLATRSRYEYEFVVYRGEGLLYAGVYIYSATPFTKSWGVKEVMRIGTC 267
           +++    + L    +Y+ + +   G G+  A   IY  T   K++ VKE++RIGTC
Sbjct: 37  KEITNVRNMLGFSGKYKGKGISLMGHGMGIASCTIY-VTELIKTYQVKELLRIGTC 91


>sp|P56463|DEOD_HELPY Purine nucleoside phosphorylase deoD-type
           OS=Helicobacter pylori GN=deoD PE=3 SV=1
          Length = 233

 Score = 31.6 bits (70), Expect = 1.9
 Identities = 17/56 (30%), Positives = 29/56 (51%)
 Frame = -3

Query: 434 RDMNGCLHCLATRSRYEYEFVVYRGEGLLYAGVYIYSATPFTKSWGVKEVMRIGTC 267
           +++    + L    +Y+   +   G G+  A   IY  T   K++ VKE++RIGTC
Sbjct: 37  KEITNVRNMLGFSGKYKGRGISLMGHGMGIASCTIY-VTELIKTYQVKELLRIGTC 91


>sp|Q894Z3|DEOD_CLOTE Purine nucleoside phosphorylase deoD-type
           OS=Clostridium tetani GN=deoD PE=3 SV=1
          Length = 235

 Score = 31.2 bits (69), Expect = 2.4
 Identities = 16/41 (39%), Positives = 26/41 (63%)
 Frame = -3

Query: 389 YEYEFVVYRGEGLLYAGVYIYSATPFTKSWGVKEVMRIGTC 267
           Y+ + V  +G G+    + IY AT   +S+GVK ++R+GTC
Sbjct: 52  YKGKRVSVQGTGMGIPSMSIY-ATELIESYGVKNLIRVGTC 91


>sp|A6VYJ1|SECA_MARMS Protein translocase subunit secA
           OS=Marinomonas sp. (strain MWYL1) GN=secA PE=3 SV=1
          Length = 900

 Score = 30.8 bits (68), Expect = 3.2
 Identities = 24/97 (24%), Positives = 44/97 (45%)
 Frame = +1

Query: 151 TYLRDYFARNYLAFRGCYQSTAKRPILQVLPHNYNPHKRQVPMRITSLTPHDFVKGVAE* 330
           T++ DY A+  +A    +++  K+ +LQVL   +  H + + M    L     ++G A+ 
Sbjct: 741 TFVNDYQAKEEIAGEQPFRAFEKQVLLQVLDTLWKEHLQTMDM----LRQGIHLRGYAQ- 795

Query: 331 IYTPAYKSPSPLYTTNSYSYLERVARQCKHPFISRIT 441
                 K+P   Y   S+   + +  Q K+  I  IT
Sbjct: 796 ------KNPKQEYKRESFELFQGLLEQIKYEVIQIIT 826


>sp|A0Q1A0|DEOD_CLONN Purine nucleoside phosphorylase deoD-type
           OS=Clostridium novyi (strain NT) GN=deoD PE=3 SV=1
          Length = 233

 Score = 30.0 bits (66), Expect = 5.4
 Identities = 15/41 (36%), Positives = 25/41 (60%)
 Frame = -3

Query: 389 YEYEFVVYRGEGLLYAGVYIYSATPFTKSWGVKEVMRIGTC 267
           Y+ + V  +G G+    + IY A    +S+GVK ++R+GTC
Sbjct: 52  YKGKRVSVQGTGMGIPSISIY-ANELIESYGVKNLIRVGTC 91


>sp|Q0HXQ1|DEOD_SHESR Purine nucleoside phosphorylase deoD-type
           OS=Shewanella sp. (strain MR-7) GN=deoD PE=3 SV=1
          Length = 236

 Score = 29.6 bits (65), Expect = 7.1
 Identities = 15/41 (36%), Positives = 23/41 (56%)
 Frame = -3

Query: 389 YEYEFVVYRGEGLLYAGVYIYSATPFTKSWGVKEVMRIGTC 267
           Y+ + +   G G+      IY AT   K +GVK ++R+GTC
Sbjct: 53  YKGKRISVMGSGMGIPSCSIY-ATELIKDYGVKNLIRVGTC 92


>sp|Q0HLE7|DEOD_SHESM Purine nucleoside phosphorylase deoD-type
           OS=Shewanella sp. (strain MR-4) GN=deoD PE=3 SV=1
          Length = 236

 Score = 29.6 bits (65), Expect = 7.1
 Identities = 15/41 (36%), Positives = 23/41 (56%)
 Frame = -3

Query: 389 YEYEFVVYRGEGLLYAGVYIYSATPFTKSWGVKEVMRIGTC 267
           Y+ + +   G G+      IY AT   K +GVK ++R+GTC
Sbjct: 53  YKGKRISVMGSGMGIPSCSIY-ATELIKDYGVKNLIRVGTC 92


>sp|Q12QG0|DEOD_SHEDO Purine nucleoside phosphorylase deoD-type
           OS=Shewanella denitrificans (strain OS217 / ATCC
           BAA-1090 / DSM 15013) GN=deoD PE=3 SV=1
          Length = 236

 Score = 29.6 bits (65), Expect = 7.1
 Identities = 14/36 (38%), Positives = 21/36 (58%)
 Frame = -3

Query: 374 VVYRGEGLLYAGVYIYSATPFTKSWGVKEVMRIGTC 267
           V+  G G+  A +Y Y      K +GVK ++R+GTC
Sbjct: 60  VMGSGMGIPSASIYAYE---LIKEYGVKNLIRVGTC 92
tr_hit_id A6RF71
Definition tr|A6RF71|A6RF71_AJECN Putative uncharacterized protein OS=Ajellomyces capsulata (strain NAm1 / WU24)
Align length 29
Score (bit) 36.2
E-value 0.84
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP911666|Adiantum capillus-veneris mRNA, clone:
YMU001_000007_G04.
         (475 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A6RF71|A6RF71_AJECN Putative uncharacterized protein OS=Ajell...    36   0.84 
tr|B5W9D9|B5W9D9_SPIMA Glycosyl transferase group 1 OS=Arthrospi...    35   2.4  
tr|Q17YP0|Q17YP0_HELAH DeoD protein OS=Helicobacter acinonychis ...    33   5.4  
tr|B6P362|B6P362_BRAFL Putative uncharacterized protein OS=Branc...    33   7.1  
tr|Q1XD77|Q1XD77_PHARU NADH-ubiquinone oxidoreductase chain 6 OS...    33   7.1  

>tr|A6RF71|A6RF71_AJECN Putative uncharacterized protein
           OS=Ajellomyces capsulata (strain NAm1 / WU24)
           GN=HCAG_08287 PE=4 SV=1
          Length = 987

 Score = 36.2 bits (82), Expect = 0.84
 Identities = 14/29 (48%), Positives = 18/29 (62%)
 Frame = +3

Query: 192 QGMLPEYSQKTNTPGPSPQL*SPQAASPY 278
           QG+LP Y+  TN PGP P    P+ A P+
Sbjct: 730 QGVLPTYNDSTNAPGPGPGRSGPETADPH 758


>tr|B5W9D9|B5W9D9_SPIMA Glycosyl transferase group 1 OS=Arthrospira
           maxima CS-328 GN=AmaxDRAFT_5389 PE=4 SV=1
          Length = 557

 Score = 34.7 bits (78), Expect = 2.4
 Identities = 15/47 (31%), Positives = 25/47 (53%)
 Frame = +1

Query: 160 RDYFARNYLAFRGCYQSTAKRPILQVLPHNYNPHKRQVPMRITSLTP 300
           R+Y   NYL++RGC+        L V    +NP+    P ++T ++P
Sbjct: 309 REYADHNYLSYRGCHGVQTSTKPLGVFLQQFNPNIAVFPNQLTEVSP 355


>tr|Q17YP0|Q17YP0_HELAH DeoD protein OS=Helicobacter acinonychis
           (strain Sheeba) GN=deoD PE=4 SV=1
          Length = 233

 Score = 33.5 bits (75), Expect = 5.4
 Identities = 18/56 (32%), Positives = 30/56 (53%)
 Frame = -3

Query: 434 RDMNGCLHCLATRSRYEYEFVVYRGEGLLYAGVYIYSATPFTKSWGVKEVMRIGTC 267
           R++    + L    +Y+ + +   G G+  A   IY  T   K++ VKE++RIGTC
Sbjct: 37  REITNVRNMLGFSGKYKGKEISLMGHGMGIASCTIY-VTELVKTYQVKELLRIGTC 91


>tr|B6P362|B6P362_BRAFL Putative uncharacterized protein
           OS=Branchiostoma floridae GN=BRAFLDRAFT_102176 PE=4 SV=1
          Length = 507

 Score = 33.1 bits (74), Expect = 7.1
 Identities = 21/60 (35%), Positives = 28/60 (46%), Gaps = 5/60 (8%)
 Frame = +1

Query: 199 CYQSTAKRPILQVLPH-----NYNPHKRQVPMRITSLTPHDFVKGVAE*IYTPAYKSPSP 363
           CYQS          PH     N+ PH RQ P  +T+  P   ++ V++  YTP    PSP
Sbjct: 388 CYQSNHSPCPPSSAPHPVPMGNHVPHPRQGPPHMTNGLPASPLEVVSQRQYTPPAPGPSP 447


>tr|Q1XD77|Q1XD77_PHARU NADH-ubiquinone oxidoreductase chain 6
           OS=Phaethon rubricauda GN=ND6 PE=3 SV=1
          Length = 173

 Score = 33.1 bits (74), Expect = 7.1
 Identities = 20/48 (41%), Positives = 28/48 (58%), Gaps = 2/48 (4%)
 Frame = -3

Query: 377 FVVYRGEGLLYAGVY--IYSATPFTKSWGVKEVMRIGTCRLWGL*LWG 240
           F+VY G G+L   VY    +A PF ++WG ++VM  G C L  L + G
Sbjct: 56  FMVYLG-GMLVVFVYSVALAADPFPEAWGDRQVMGYGVCLLLTLAVGG 102