BP911671
Clone id YMU001_000007_G09
Library
Length 520
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000007_G09.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence
AAGCAATCTCTGAAGCTGCACTTTCACTGGCACACTTCAACCTCAAGTCTGCTACCTTGC
TTTCAATTTCTTGTATAGGAATCAAAAGAAGCCGATTCTCCTGTACTAATTTAGAGTAGA
ATTGCGATGCTTCAGCACTCCTGCCCACCTTCTCGCAATATAAAGCATTGAACATCATTG
CTCTCATGTGACCCTTCTCATCTGCCTTTGAGTAGCAACTGAAGGCATTCATAACTGGTG
TGCTAAATTGATCTGCAAACTCCAAAAAGTTTCCCAGCCTAAAAATCACATCCGCATCCT
CACTCCTAAAAAATTTCTGGAGAAGGCTTTCAATATCCATGTCTTCAAATGCAGCTCCCA
CATCAAAGAGAAATTCAGGCTCTATAATTCTCAATCCTCTGGTGATCCAGTATTGGCAAC
CACCTTGATCTGACTCTTCTCGGCACATTTCTGCCAGCAAAAACGCAGCATCCTCACACC
CCACATTGGCCGGCTGCTCCAATAGGTCCTTAGATTTCCT
■■Homology search results ■■ -
sp_hit_id A7Z4S6
Definition sp|A7Z4S6|DXR_BACA2 1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Bacillus amyloliquefaciens (strain FZB42)
Align length 50
Score (bit) 32.0
E-value 1.8
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP911671|Adiantum capillus-veneris mRNA, clone:
YMU001_000007_G09.
(520 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|A7Z4S6|DXR_BACA2 1-deoxy-D-xylulose 5-phosphate reductoisomer... 32 1.8
sp|Q895K5|DXR_CLOTE 1-deoxy-D-xylulose 5-phosphate reductoisomer... 32 2.4
sp|Q9QX73|ARHG9_RAT Rho guanine nucleotide exchange factor 9 OS=... 31 4.0
sp|Q3UTH8|ARHG9_MOUSE Rho guanine nucleotide exchange factor 9 O... 31 4.0
sp|P55715|NOLU_RHISN Nodulation protein nolU OS=Rhizobium sp. (s... 30 6.8
sp|O13875|YE1A_SCHPO Uncharacterized Sel1-like repeat-containing... 30 6.9
sp|Q0AEI7|MUTS_NITEC DNA mismatch repair protein mutS OS=Nitroso... 30 6.9
sp|Q9BSK1|ZN577_HUMAN Zinc finger protein 577 OS=Homo sapiens GN... 30 9.0
sp|Q82U08|MUTS_NITEU DNA mismatch repair protein mutS OS=Nitroso... 30 9.0
sp|O31753|DXR_BACSU 1-deoxy-D-xylulose 5-phosphate reductoisomer... 30 9.0

>sp|A7Z4S6|DXR_BACA2 1-deoxy-D-xylulose 5-phosphate reductoisomerase
OS=Bacillus amyloliquefaciens (strain FZB42) GN=dxr PE=3
SV=1
Length = 383

Score = 32.0 bits (71), Expect = 1.8
Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 4/50 (8%)
Frame = -1

Query: 406 ITRGLRIIEPEFLFDVGAAFEDMDI----ESLLQKFFRSEDADVIFRLGN 269
+ +GL +IE +LFD+ +E +D+ ES++ D VI +LGN
Sbjct: 214 MNKGLEVIEAHWLFDI--PYEQIDVVLHKESIIHSMVEFHDRSVIAQLGN 261


>sp|Q895K5|DXR_CLOTE 1-deoxy-D-xylulose 5-phosphate reductoisomerase
OS=Clostridium tetani GN=dxr PE=3 SV=1
Length = 384

Score = 31.6 bits (70), Expect = 2.4
Identities = 17/50 (34%), Positives = 29/50 (58%), Gaps = 4/50 (8%)
Frame = -1

Query: 406 ITRGLRIIEPEFLFDVGAAFEDMDI----ESLLQKFFRSEDADVIFRLGN 269
+ +GL +IE FLFDV +ED+++ ES++ +D VI +L +
Sbjct: 216 MNKGLEVIEAHFLFDVD--YEDIEVVVHPESIIHSMVEYKDGSVIAQLAS 263


>sp|Q9QX73|ARHG9_RAT Rho guanine nucleotide exchange factor 9
OS=Rattus norvegicus GN=Arhgef9 PE=1 SV=1
Length = 493

Score = 30.8 bits (68), Expect = 4.0
Identities = 22/77 (28%), Positives = 39/77 (50%)
Frame = -1

Query: 253 DQFSTPVMNAFSCYSKADEKGHMRAMMFNALYCEKVGRSAEASQFYSKLVQENRLLLIPI 74
D F+ + NAF ++K E+ H +F A E+ R A + K+VQE+ + I
Sbjct: 389 DDFNVSMKNAFKLHNKETEEVH----LFFAKKLEEKIRWLRAFREERKMVQEDEKIGFEI 444

Query: 73 QEIESKVADLRLKCASE 23
E + + A + ++ AS+
Sbjct: 445 SENQKRQAAMTVRKASK 461


>sp|Q3UTH8|ARHG9_MOUSE Rho guanine nucleotide exchange factor 9
OS=Mus musculus GN=Arhgef9 PE=2 SV=1
Length = 516

Score = 30.8 bits (68), Expect = 4.0
Identities = 22/77 (28%), Positives = 39/77 (50%)
Frame = -1

Query: 253 DQFSTPVMNAFSCYSKADEKGHMRAMMFNALYCEKVGRSAEASQFYSKLVQENRLLLIPI 74
D F+ + NAF ++K E+ H +F A E+ R A + K+VQE+ + I
Sbjct: 382 DDFNVSMKNAFKLHNKETEEVH----LFFAKKLEEKIRWLRAFREERKMVQEDEKIGFEI 437

Query: 73 QEIESKVADLRLKCASE 23
E + + A + ++ AS+
Sbjct: 438 SENQKRQAAMTVRKASK 454


>sp|P55715|NOLU_RHISN Nodulation protein nolU OS=Rhizobium sp.
(strain NGR234) GN=nolU PE=4 SV=1
Length = 212

Score = 30.0 bits (66), Expect = 6.8
Identities = 15/30 (50%), Positives = 19/30 (63%)
Frame = +3

Query: 396 PLVIQYWQPP*SDSSRHISASKNAASSHPT 485
P+ IQ QP S S +S S+ AAS+HPT
Sbjct: 6 PIAIQTTQPDVSFQSHSVSRSELAASTHPT 35


>sp|O13875|YE1A_SCHPO Uncharacterized Sel1-like repeat-containing
protein C1B3.10c OS=Schizosaccharomyces pombe
GN=SPAC1B3.10c PE=2 SV=3
Length = 680

Score = 30.0 bits (66), Expect = 6.9
Identities = 14/52 (26%), Positives = 25/52 (48%)
Frame = -1

Query: 298 DADVIFRLGNFLEFADQFSTPVMNAFSCYSKADEKGHMRAMMFNALYCEKVG 143
D D IF+LG++ + A++CY A E+ + ++N Y + G
Sbjct: 563 DIDAIFKLGDYYYYGIGTPKDYSKAYTCYKIAYEQSSIGMGLWNMAYMHEYG 614


>sp|Q0AEI7|MUTS_NITEC DNA mismatch repair protein mutS
OS=Nitrosomonas eutropha (strain C91) GN=mutS PE=3 SV=1
Length = 880

Score = 30.0 bits (66), Expect = 6.9
Identities = 13/36 (36%), Positives = 23/36 (63%)
Frame = -1

Query: 136 AEASQFYSKLVQENRLLLIPIQEIESKVADLRLKCA 29
A+ + Y +L+++ +IP+QEI VA+L + CA
Sbjct: 540 AQEKKLYEQLLEQLADFIIPLQEIARSVAELDVLCA 575


>sp|Q9BSK1|ZN577_HUMAN Zinc finger protein 577 OS=Homo sapiens
GN=ZNF577 PE=2 SV=1
Length = 478

Score = 29.6 bits (65), Expect = 9.0
Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Frame = -1

Query: 199 EKGHMRAMMFNALYCEKVGRSAEASQFYSKLVQENRLL-LIPIQ 71
EK H+R N+L EK + S + S+L+QE + + +PI+
Sbjct: 366 EKTHIRETAINSLTVEKPSSRSHTSLYMSELIQEQKTVNTVPIE 409


>sp|Q82U08|MUTS_NITEU DNA mismatch repair protein mutS
OS=Nitrosomonas europaea GN=mutS PE=3 SV=1
Length = 873

Score = 29.6 bits (65), Expect = 9.0
Identities = 16/42 (38%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Frame = -1

Query: 136 AEASQFYSKLVQENRLLLIPIQEIESKVADLRLKCA-SESAA 14
A Y +L+++ +IP+QEI VA+L + CA +E AA
Sbjct: 533 AREKMLYERLLEQLADFIIPLQEIARSVAELDVLCAFAERAA 574


>sp|O31753|DXR_BACSU 1-deoxy-D-xylulose 5-phosphate reductoisomerase
OS=Bacillus subtilis GN=dxr PE=3 SV=1
Length = 388

Score = 29.6 bits (65), Expect = 9.0
Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 4/49 (8%)
Frame = -1

Query: 406 ITRGLRIIEPEFLFDVGAAFEDMDI----ESLLQKFFRSEDADVIFRLG 272
+ +GL +IE +LFD+ +E +D+ ES++ D VI +LG
Sbjct: 214 MNKGLEVIEAHWLFDI--PYEQIDVVLHKESIIHSMVEFHDKSVIAQLG 260


tr_hit_id Q38BI0
Definition tr|Q38BI0|Q38BI0_9TRYP Putative uncharacterized protein OS=Trypanosoma brucei
Align length 73
Score (bit) 35.8
E-value 1.3
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP911671|Adiantum capillus-veneris mRNA, clone:
YMU001_000007_G09.
(520 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|Q38BI0|Q38BI0_9TRYP Putative uncharacterized protein OS=Trypa... 36 1.3
tr|Q1DEY6|Q1DEY6_MYXXD Putative TonB-dependent receptor OS=Myxoc... 35 2.2
tr|P74275|P74275_SYNY3 Delta-1-pyrroline-5-carboxylate dehydroge... 35 2.2
tr|B4K0M9|B4K0M9_DROGR GH11750 OS=Drosophila grimshawi GN=GH1175... 35 2.2
tr|B0N7P1|B0N7P1_9FIRM Putative uncharacterized protein OS=Clost... 34 3.8
tr|A6QYB6|A6QYB6_AJECN Putative uncharacterized protein OS=Ajell... 34 3.8
tr|B5HGJ6|B5HGJ6_STRPR Putative uncharacterized protein OS=Strep... 33 6.5
tr|Q5B7N5|Q5B7N5_EMENI Putative uncharacterized protein OS=Emeri... 33 6.5

>tr|Q38BI0|Q38BI0_9TRYP Putative uncharacterized protein
OS=Trypanosoma brucei GN=Tb10.70.3050 PE=4 SV=1
Length = 864

Score = 35.8 bits (81), Expect = 1.3
Identities = 25/73 (34%), Positives = 37/73 (50%), Gaps = 6/73 (8%)
Frame = -1

Query: 217 CYSKADEKGHMRAMMFNALYC-----EKVGRSAEASQFYS-KLVQENRLLLIPIQEIESK 56
C ADE M +FN L E G + + +Q S L +EN LLL+ +QE E
Sbjct: 227 CKIIADEANTMVGALFNQLLSAIHSNESYGEALKEAQHNSASLAEENGLLLLKLQEAEQD 286

Query: 55 VADLRLKCASESA 17
++ LR++ E+A
Sbjct: 287 LSKLRVEQGQETA 299


>tr|Q1DEY6|Q1DEY6_MYXXD Putative TonB-dependent receptor
OS=Myxococcus xanthus (strain DK 1622) GN=MXAN_0518 PE=3
SV=1
Length = 958

Score = 35.0 bits (79), Expect = 2.2
Identities = 27/93 (29%), Positives = 46/93 (49%), Gaps = 1/93 (1%)
Frame = -1

Query: 304 SEDADVIFRLGNFLEFADQFSTPVMNAFSCYSKADEKGHMRAMMFNALYC-EKVGRSAEA 128
+++AD+ F LGN Q++ + + F+ Y R ++FN C E +G+ EA
Sbjct: 40 ADEADIAFELGNDAYSKGQYAEALRSYFTSYRLVPN----RNVLFNIARCFEALGKFNEA 95

Query: 127 SQFYSKLVQENRLLLIPIQEIESKVADLRLKCA 29
++Y+ L+ E+ L E+ V LR K A
Sbjct: 96 YRYYNDLLAED-LPKEDAAEVSRSVDRLRPKVA 127


>tr|P74275|P74275_SYNY3 Delta-1-pyrroline-5-carboxylate
dehydrogenase OS=Synechocystis sp. (strain PCC 6803)
GN=putA PE=4 SV=1
Length = 990

Score = 35.0 bits (79), Expect = 2.2
Identities = 22/68 (32%), Positives = 35/68 (51%)
Frame = -1

Query: 397 GLRIIEPEFLFDVGAAFEDMDIESLLQKFFRSEDADVIFRLGNFLEFADQFSTPVMNAFS 218
GLR+ +F+ + A + +I + LQ++ E+ ++ L L FAD STP A
Sbjct: 55 GLRVQLFKFIDCLPALQSNSEIANHLQQYMSEEEVELPEALKKLLNFADAHSTPAQIAAG 114

Query: 217 CYSKADEK 194
SKA E+
Sbjct: 115 TVSKATEQ 122


>tr|B4K0M9|B4K0M9_DROGR GH11750 OS=Drosophila grimshawi GN=GH11750
PE=4 SV=1
Length = 335

Score = 35.0 bits (79), Expect = 2.2
Identities = 22/65 (33%), Positives = 30/65 (46%), Gaps = 8/65 (12%)
Frame = +3

Query: 336 SMSSNAAPTSKRNS-----GSIILNPLVIQYWQPP*SDSSRHISASKNAASSHP---TLA 491
+M S A +S RNS ++ +P++ +W PP H S ASSHP T A
Sbjct: 270 NMLSQAKKSSARNSINEDGSTMCHDPVMPSWWNPPSRSQRNHHPMSSAGASSHPALHTFA 329

Query: 492 GCSNR 506
C R
Sbjct: 330 DCGTR 334


>tr|B0N7P1|B0N7P1_9FIRM Putative uncharacterized protein
OS=Clostridium ramosum DSM 1402 GN=CLORAM_02624 PE=4
SV=1
Length = 742

Score = 34.3 bits (77), Expect = 3.8
Identities = 13/39 (33%), Positives = 22/39 (56%)
Frame = -1

Query: 295 ADVIFRLGNFLEFADQFSTPVMNAFSCYSKADEKGHMRA 179
++ ++ LG LEF + + AF CY +A +GH R+
Sbjct: 262 SEALYSLGTCLEFGEGIEQDIERAFKCYEEAANQGHERS 300


>tr|A6QYB6|A6QYB6_AJECN Putative uncharacterized protein
OS=Ajellomyces capsulata (strain NAm1 / WU24)
GN=HCAG_02373 PE=4 SV=1
Length = 823

Score = 34.3 bits (77), Expect = 3.8
Identities = 22/86 (25%), Positives = 42/86 (48%), Gaps = 7/86 (8%)
Frame = -1

Query: 307 RSEDADVIFRLGNFLEFADQFSTP--VMNAFSCYSKADEKGHMRAMMFNALYCEKVGRSA 134
R + D + ++G++ + + TP V NAF+CY A E H ++N + + G +
Sbjct: 544 RQSNLDSLVKMGDY--YFHGYGTPREVENAFTCYHSAAEGYHSAQALWNLGWMHENGYAT 601

Query: 133 E-----ASQFYSKLVQENRLLLIPIQ 71
E A +FY ++ N +P++
Sbjct: 602 EQDFHMAKRFYDLALETNDEAYLPVK 627


>tr|B5HGJ6|B5HGJ6_STRPR Putative uncharacterized protein
OS=Streptomyces pristinaespiralis ATCC 25486
GN=SSDG_04280 PE=4 SV=1
Length = 875

Score = 33.5 bits (75), Expect = 6.5
Identities = 24/66 (36%), Positives = 29/66 (43%)
Frame = -1

Query: 313 FFRSEDADVIFRLGNFLEFADQFSTPVMNAFSCYSKADEKGHMRAMMFNALYCEKVGRSA 134
F R DAD + RLG+ F A CY+ A GH RA A E GR
Sbjct: 585 FRRHADADGLARLGHEAHARGLFR----EASLCYAAAVRAGHRRAAWSLAYMLEAAGRIL 640

Query: 133 EASQFY 116
EA ++Y
Sbjct: 641 EALRWY 646


>tr|Q5B7N5|Q5B7N5_EMENI Putative uncharacterized protein
OS=Emericella nidulans GN=AN3445.2 PE=4 SV=1
Length = 723

Score = 33.5 bits (75), Expect = 6.5
Identities = 21/59 (35%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
Frame = -1

Query: 283 FRLGNFLEFAD-QFSTPVMNAFSCYSKADEKGHMRAMMFNALYCEKVGRSAEASQFYSK 110
F G +LEF + AF CYS+A EKG+ RA + E G +A + Y K
Sbjct: 214 FIKGMWLEFGKFGYRVDKKEAFRCYSRAAEKGYARAEYRIGMQFESSGEPEKAIRHYEK 272