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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP911673
Clone id YMU001_000007_G11
Library
Length 470
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000007_G11.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
AACTCGACATGAAGTTGAGAGATGACCTGGAAAGGCTGAAAAAGATCAGAAACCACCGTG
GTCTTCGTCATTATTGGGGCTTGCGTGTGCGTGGTCAGCACACAAAAACAACTGGAAGGC
GGGGGAGGACAGTTGGTGTGTCCAAGAAGCGTTAAGTCAAGGCACTGCAGAGTCTTTAGG
ATGCAGTTCCTAAGAGTTTTGATACTGATCTGTGCAACAATATTTTTAGAGTTAAAAGCC
AGCTTTTTTGGTTTGGTTCCCGGCTGGCTGATTAGAATTGATCATGCACGGGATCTTTCC
TGACCTGTGCGCTGGGTTAGTTTTCTTCAGCTGGAGGGCTTCTTCTCTTTATCAGCTGGT
ATTGTAATTCCATGAGAGCCTTTTAAAGTATTCTTGCCTTGATTAGGTATTTACTGAAGT
GAATGGTTAACACTTCTGGAATTATGTTTCAAAAAAAAAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id P34788
Definition sp|P34788|RS18_ARATH 40S ribosomal protein S18 OS=Arabidopsis thaliana
Align length 33
Score (bit) 74.3
E-value 2.0e-13
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP911673|Adiantum capillus-veneris mRNA, clone:
YMU001_000007_G11.
         (450 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P34788|RS18_ARATH 40S ribosomal protein S18 OS=Arabidopsis th...    74   2e-13
sp|P41094|RS18_DROME 40S ribosomal protein S18 OS=Drosophila mel...    70   4e-12
sp|Q8ISP0|RS18_BRABE 40S ribosomal protein S18 OS=Branchiostoma ...    67   3e-11
sp|Q8IT98|RS18_AEQIR 40S ribosomal protein S18 OS=Aequipecten ir...    67   3e-11
sp|Q962R1|RS18_SPOFR 40S ribosomal protein S18 OS=Spodoptera fru...    67   5e-11
sp|P49202|RS18_CHLRE 40S ribosomal protein S18 OS=Chlamydomonas ...    66   6e-11
sp|P62271|RS18_RAT 40S ribosomal protein S18 OS=Rattus norvegicu...    65   1e-10
sp|P62272|RS18_PIG 40S ribosomal protein S18 OS=Sus scrofa GN=RP...    65   1e-10
sp|P62270|RS18_MOUSE 40S ribosomal protein S18 OS=Mus musculus G...    65   1e-10
sp|Q90YQ5|RS18_ICTPU 40S ribosomal protein S18 OS=Ictalurus punc...    65   1e-10
sp|P62269|RS18_HUMAN 40S ribosomal protein S18 OS=Homo sapiens G...    65   1e-10
sp|Q8JGS9|RS18_DANRE 40S ribosomal protein S18 OS=Danio rerio GN...    65   1e-10
sp|A5JST6|RS18_CAPHI 40S ribosomal protein S18 OS=Capra hircus G...    65   1e-10
sp|Q5TJE9|RS18_CANFA 40S ribosomal protein S18 OS=Canis familiar...    65   1e-10
sp|Q3T0R1|RS18_BOVIN 40S ribosomal protein S18 OS=Bos taurus GN=...    65   1e-10
sp|P35271|RS18_YEAST 40S ribosomal protein S18 OS=Saccharomyces ...    64   3e-10
sp|P48151|RS18_ENTHI 40S ribosomal protein S18 OS=Entamoeba hist...    57   5e-08
sp|Q869U7|RS18_DICDI 40S ribosomal protein S18 OS=Dictyostelium ...    56   8e-08
sp|O94754|RS18_SCHPO 40S ribosomal protein S18 OS=Schizosaccharo...    54   2e-07
sp|A5UN52|RS13_METS3 30S ribosomal protein S13P OS=Methanobrevib...    45   1e-04
sp|O74021|RS13_PYRHO 30S ribosomal protein S13P OS=Pyrococcus ho...    44   4e-04
sp|Q8U0E2|RS13_PYRFU 30S ribosomal protein S13P OS=Pyrococcus fu...    44   4e-04
sp|Q9V1A0|RS13_PYRAB 30S ribosomal protein S13P OS=Pyrococcus ab...    44   4e-04
sp|Q8TVC1|RS13_METKA 30S ribosomal protein S13P OS=Methanopyrus ...    44   4e-04
sp|Q2NFZ3|RS13_METST 30S ribosomal protein S13P OS=Methanosphaer...    43   7e-04
sp|Q6KZP8|RS13_PICTO 30S ribosomal protein S13P OS=Picrophilus t...    42   0.001
sp|A0B9L1|RS13_METTP 30S ribosomal protein S13P OS=Methanosaeta ...    40   0.003
sp|O26141|RS13_METTH 30S ribosomal protein S13P OS=Methanobacter...    40   0.003
sp|Q8PV19|RS13_METMA 30S ribosomal protein S13P OS=Methanosarcin...    40   0.003
sp|Q46GC7|RS13_METBF 30S ribosomal protein S13P OS=Methanosarcin...    40   0.003

>sp|P34788|RS18_ARATH 40S ribosomal protein S18 OS=Arabidopsis
           thaliana GN=RPS18A PE=1 SV=1
          Length = 152

 Score = 74.3 bits (181), Expect = 2e-13
 Identities = 33/33 (100%), Positives = 33/33 (100%)
 Frame = +3

Query: 3   LDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQH 101
           LDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQH
Sbjct: 103 LDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQH 135


>sp|P41094|RS18_DROME 40S ribosomal protein S18 OS=Drosophila
           melanogaster GN=RpS18 PE=1 SV=1
          Length = 152

 Score = 70.1 bits (170), Expect = 4e-12
 Identities = 31/33 (93%), Positives = 32/33 (96%)
 Frame = +3

Query: 3   LDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQH 101
           LD KLRDDLERLKKIR+HRGLRHYWGLRVRGQH
Sbjct: 103 LDSKLRDDLERLKKIRSHRGLRHYWGLRVRGQH 135


>sp|Q8ISP0|RS18_BRABE 40S ribosomal protein S18 OS=Branchiostoma
           belcheri GN=RPS18 PE=2 SV=1
          Length = 152

 Score = 67.0 bits (162), Expect = 3e-11
 Identities = 30/33 (90%), Positives = 31/33 (93%)
 Frame = +3

Query: 3   LDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQH 101
           LD KLR+DLERLKKIR HRGLRHYWGLRVRGQH
Sbjct: 103 LDNKLREDLERLKKIRAHRGLRHYWGLRVRGQH 135


>sp|Q8IT98|RS18_AEQIR 40S ribosomal protein S18 OS=Aequipecten
           irradians GN=RPS18 PE=2 SV=1
          Length = 152

 Score = 67.0 bits (162), Expect = 3e-11
 Identities = 30/33 (90%), Positives = 31/33 (93%)
 Frame = +3

Query: 3   LDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQH 101
           LD KLR+DLERLKKIR HRGLRHYWGLRVRGQH
Sbjct: 103 LDNKLREDLERLKKIRAHRGLRHYWGLRVRGQH 135


>sp|Q962R1|RS18_SPOFR 40S ribosomal protein S18 OS=Spodoptera
           frugiperda GN=RpS18 PE=2 SV=1
          Length = 152

 Score = 66.6 bits (161), Expect = 5e-11
 Identities = 29/33 (87%), Positives = 31/33 (93%)
 Frame = +3

Query: 3   LDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQH 101
           LD KLR+DLERLKKIR HRG+RHYWGLRVRGQH
Sbjct: 103 LDSKLREDLERLKKIRAHRGMRHYWGLRVRGQH 135


>sp|P49202|RS18_CHLRE 40S ribosomal protein S18 OS=Chlamydomonas
           reinhardtii GN=RPS18 PE=2 SV=1
          Length = 153

 Score = 66.2 bits (160), Expect = 6e-11
 Identities = 29/33 (87%), Positives = 30/33 (90%)
 Frame = +3

Query: 3   LDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQH 101
           LD  +RDDLERLKKIR HRGLRHYWGLRVRGQH
Sbjct: 104 LDTVMRDDLERLKKIRGHRGLRHYWGLRVRGQH 136


>sp|P62271|RS18_RAT 40S ribosomal protein S18 OS=Rattus norvegicus
           GN=Rps18 PE=1 SV=3
          Length = 152

 Score = 65.5 bits (158), Expect = 1e-10
 Identities = 29/33 (87%), Positives = 31/33 (93%)
 Frame = +3

Query: 3   LDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQH 101
           LD KLR+DLERLKKIR HRGLRH+WGLRVRGQH
Sbjct: 103 LDNKLREDLERLKKIRAHRGLRHFWGLRVRGQH 135


>sp|P62272|RS18_PIG 40S ribosomal protein S18 OS=Sus scrofa GN=RPS18
           PE=2 SV=3
          Length = 152

 Score = 65.5 bits (158), Expect = 1e-10
 Identities = 29/33 (87%), Positives = 31/33 (93%)
 Frame = +3

Query: 3   LDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQH 101
           LD KLR+DLERLKKIR HRGLRH+WGLRVRGQH
Sbjct: 103 LDNKLREDLERLKKIRAHRGLRHFWGLRVRGQH 135


>sp|P62270|RS18_MOUSE 40S ribosomal protein S18 OS=Mus musculus
           GN=Rps18 PE=2 SV=3
          Length = 152

 Score = 65.5 bits (158), Expect = 1e-10
 Identities = 29/33 (87%), Positives = 31/33 (93%)
 Frame = +3

Query: 3   LDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQH 101
           LD KLR+DLERLKKIR HRGLRH+WGLRVRGQH
Sbjct: 103 LDNKLREDLERLKKIRAHRGLRHFWGLRVRGQH 135


>sp|Q90YQ5|RS18_ICTPU 40S ribosomal protein S18 OS=Ictalurus
           punctatus GN=rps18 PE=2 SV=1
          Length = 152

 Score = 65.5 bits (158), Expect = 1e-10
 Identities = 29/33 (87%), Positives = 31/33 (93%)
 Frame = +3

Query: 3   LDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQH 101
           LD KLR+DLERLKKIR HRGLRH+WGLRVRGQH
Sbjct: 103 LDNKLREDLERLKKIRAHRGLRHFWGLRVRGQH 135
tr_hit_id Q8H590
Definition tr|Q8H590|Q8H590_ORYSJ Os03g0794700 protein OS=Oryza sativa subsp. japonica
Align length 33
Score (bit) 74.3
E-value 3.0e-12
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP911673|Adiantum capillus-veneris mRNA, clone:
YMU001_000007_G11.
         (450 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q8H590|Q8H590_ORYSJ Os03g0794700 protein OS=Oryza sativa subs...    74   3e-12
tr|Q8H588|Q8H588_ORYSJ Os07g0173700 protein OS=Oryza sativa subs...    74   3e-12
tr|Q8H583|Q8H583_ORYSJ Ribosomal protein S18-like OS=Oryza sativ...    74   3e-12
tr|Q6RJY9|Q6RJY9_CAPAN Putative ribosomal protein OS=Capsicum an...    74   3e-12
tr|Q5PNZ9|Q5PNZ9_ARATH At1g22780 (Pointed first leaf) OS=Arabido...    74   3e-12
tr|Q3HRY6|Q3HRY6_SOLTU Putative uncharacterized protein OS=Solan...    74   3e-12
tr|Q0D8A3|Q0D8A3_ORYSJ Os07g0173500 protein OS=Oryza sativa subs...    74   3e-12
tr|B7FMJ8|B7FMJ8_MEDTR Putative uncharacterized protein OS=Medic...    74   3e-12
tr|B7FH21|B7FH21_MEDTR Putative uncharacterized protein OS=Medic...    74   3e-12
tr|B6SQS0|B6SQS0_MAIZE 40S ribosomal protein S18 OS=Zea mays PE=...    74   3e-12
tr|B4G286|B4G286_MAIZE 40S ribosomal protein S18 OS=Zea mays PE=...    74   3e-12
tr|B4FUS2|B4FUS2_MAIZE 40S ribosomal protein S18 OS=Zea mays PE=...    74   3e-12
tr|A9TES6|A9TES6_PHYPA Predicted protein OS=Physcomitrella paten...    74   3e-12
tr|A9SF68|A9SF68_PHYPA Predicted protein OS=Physcomitrella paten...    74   3e-12
tr|A9RKR2|A9RKR2_PHYPA Predicted protein OS=Physcomitrella paten...    74   3e-12
tr|A9RKQ8|A9RKQ8_PHYPA Predicted protein OS=Physcomitrella paten...    74   3e-12
tr|A9P8I9|A9P8I9_POPTR Putative uncharacterized protein OS=Popul...    74   3e-12
tr|A9P8E8|A9P8E8_POPTR Putative uncharacterized protein OS=Popul...    74   3e-12
tr|A9NQU0|A9NQU0_PICSI Putative uncharacterized protein OS=Picea...    74   3e-12
tr|A7PUC0|A7PUC0_VITVI Chromosome chr7 scaffold_31, whole genome...    74   3e-12
tr|A7NWN0|A7NWN0_VITVI Chromosome chr5 scaffold_2, whole genome ...    74   3e-12
tr|A3ANK5|A3ANK5_ORYSJ Putative uncharacterized protein OS=Oryza...    74   3e-12
tr|A2YIM5|A2YIM5_ORYSI Putative uncharacterized protein OS=Oryza...    74   3e-12
tr|A2XMV2|A2XMV2_ORYSI Putative uncharacterized protein OS=Oryza...    74   3e-12
tr|Q8L806|Q8L806_WHEAT Putative ribosomal protein S18 OS=Triticu...    72   1e-11
tr|A3BH24|A3BH24_ORYSJ Putative uncharacterized protein OS=Oryza...    72   2e-11
tr|A4SBF6|A4SBF6_OSTLU Ribosomal protein S18, component of cytos...    70   5e-11
tr|Q6XHV8|Q6XHV8_DROYA Ribosomal protein S18 (Fragment) OS=Droso...    70   5e-11
tr|Q5R288|Q5R288_DROSI RpS18 protein (Ribosomal protein S18) OS=...    70   5e-11
tr|Q5R269|Q5R269_DROSE RpS18 protein (Ribosomal protein S18) OS=...    70   5e-11

>tr|Q8H590|Q8H590_ORYSJ Os03g0794700 protein OS=Oryza sativa subsp.
           japonica GN=OJ1656_E11.104 PE=2 SV=1
          Length = 152

 Score = 74.3 bits (181), Expect = 3e-12
 Identities = 33/33 (100%), Positives = 33/33 (100%)
 Frame = +3

Query: 3   LDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQH 101
           LDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQH
Sbjct: 103 LDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQH 135


>tr|Q8H588|Q8H588_ORYSJ Os07g0173700 protein OS=Oryza sativa subsp.
           japonica GN=OJ1656_E11.108 PE=4 SV=1
          Length = 148

 Score = 74.3 bits (181), Expect = 3e-12
 Identities = 33/33 (100%), Positives = 33/33 (100%)
 Frame = +3

Query: 3   LDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQH 101
           LDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQH
Sbjct: 99  LDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQH 131


>tr|Q8H583|Q8H583_ORYSJ Ribosomal protein S18-like OS=Oryza sativa
           subsp. japonica GN=OJ1656_E11.114 PE=4 SV=1
          Length = 145

 Score = 74.3 bits (181), Expect = 3e-12
 Identities = 33/33 (100%), Positives = 33/33 (100%)
 Frame = +3

Query: 3   LDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQH 101
           LDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQH
Sbjct: 96  LDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQH 128


>tr|Q6RJY9|Q6RJY9_CAPAN Putative ribosomal protein OS=Capsicum
           annuum PE=2 SV=1
          Length = 152

 Score = 74.3 bits (181), Expect = 3e-12
 Identities = 33/33 (100%), Positives = 33/33 (100%)
 Frame = +3

Query: 3   LDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQH 101
           LDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQH
Sbjct: 103 LDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQH 135


>tr|Q5PNZ9|Q5PNZ9_ARATH At1g22780 (Pointed first leaf)
           OS=Arabidopsis thaliana GN=PFL PE=2 SV=1
          Length = 152

 Score = 74.3 bits (181), Expect = 3e-12
 Identities = 33/33 (100%), Positives = 33/33 (100%)
 Frame = +3

Query: 3   LDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQH 101
           LDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQH
Sbjct: 103 LDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQH 135


>tr|Q3HRY6|Q3HRY6_SOLTU Putative uncharacterized protein OS=Solanum
           tuberosum PE=2 SV=1
          Length = 152

 Score = 74.3 bits (181), Expect = 3e-12
 Identities = 33/33 (100%), Positives = 33/33 (100%)
 Frame = +3

Query: 3   LDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQH 101
           LDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQH
Sbjct: 103 LDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQH 135


>tr|Q0D8A3|Q0D8A3_ORYSJ Os07g0173500 protein OS=Oryza sativa subsp.
           japonica GN=Os07g0173500 PE=4 SV=1
          Length = 168

 Score = 74.3 bits (181), Expect = 3e-12
 Identities = 33/33 (100%), Positives = 33/33 (100%)
 Frame = +3

Query: 3   LDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQH 101
           LDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQH
Sbjct: 119 LDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQH 151


>tr|B7FMJ8|B7FMJ8_MEDTR Putative uncharacterized protein OS=Medicago
           truncatula PE=2 SV=1
          Length = 152

 Score = 74.3 bits (181), Expect = 3e-12
 Identities = 33/33 (100%), Positives = 33/33 (100%)
 Frame = +3

Query: 3   LDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQH 101
           LDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQH
Sbjct: 103 LDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQH 135


>tr|B7FH21|B7FH21_MEDTR Putative uncharacterized protein OS=Medicago
           truncatula PE=2 SV=1
          Length = 152

 Score = 74.3 bits (181), Expect = 3e-12
 Identities = 33/33 (100%), Positives = 33/33 (100%)
 Frame = +3

Query: 3   LDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQH 101
           LDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQH
Sbjct: 103 LDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQH 135


>tr|B6SQS0|B6SQS0_MAIZE 40S ribosomal protein S18 OS=Zea mays PE=2
           SV=1
          Length = 126

 Score = 74.3 bits (181), Expect = 3e-12
 Identities = 33/33 (100%), Positives = 33/33 (100%)
 Frame = +3

Query: 3   LDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQH 101
           LDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQH
Sbjct: 77  LDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQH 109