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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP911676
Clone id YMU001_000007_H02
Library
Length 601
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000007_H02.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
GATATTACCTGCAGGTACTCGATGTTGGAGATAGGGTTGCAAGAATGTGCACACAGCTTG
GAGATGGAGAGGAAGCTTAAGATACACAATAGAGAATGTATTACTCTTAAGTGTGTGAAT
ACAGGATAAGATAGCCCTAAAGTGATGGATGTATATTCAAAGCACCGGAGGAAAAACCTC
CCACTAGTGAGAGAAAAAAGTGCCTCGACAGTCCCAAGTGTGTTCACACACATCACTACC
ATATACATGGTAACAAATCCCTCAGGAAAGTGATTCGGTGGACGAGAGATGGTACGTAGA
GTATGGTGAAGTGCCATGCTCTATGGATATGATCAGTCCACAAAGGGAAGCAAGCCCAAA
GGTTTGCGAAAAGCTTCGAGACTCTCACAAGGCAATGTATTTGTGAAAAGATTTGCAAGG
TTTTTCTGTGTCAGAGCATAAGCCAAGCTATCTCTACATATGAGAGTCTCTCCTTGACAT
AGTTATAATGCATCTCAATGTGCTTTGTGTATGAAAGACTTGGTTCCTCATAACTGTCAA
TGCACTCTGACTCTTAGTGTAAATGAGAGTGCTAGACTACTGTCCAACTCCCAAATAGCC
A
■■Homology search results ■■ -
sp_hit_id Q6BVY9
Definition sp|Q6BVY9|TIM50_DEBHA Mitochondrial import inner membrane translocase subunit TIM50 OS=Debaryomyces hansenii
Align length 122
Score (bit) 33.1
E-value 1.1
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP911676|Adiantum capillus-veneris mRNA, clone:
YMU001_000007_H02.
         (601 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q6BVY9|TIM50_DEBHA Mitochondrial import inner membrane transl...    33   1.1  

>sp|Q6BVY9|TIM50_DEBHA Mitochondrial import inner membrane
           translocase subunit TIM50 OS=Debaryomyces hansenii
           GN=TIM50 PE=3 SV=1
          Length = 471

 Score = 33.1 bits (74), Expect = 1.1
 Identities = 31/122 (25%), Positives = 50/122 (40%), Gaps = 23/122 (18%)
 Frame = -3

Query: 449 SLAYALTQKNLANLFT--------NTLPCESLEAFRKPLGLLPFVD*SYP*SMALH---- 306
           +L Y    K L +LFT        N LP  + EA+R+PL L+  +D      + +H    
Sbjct: 152 NLMYGRLNKRLGSLFTFFSEPVFENLLPPPAPEAYRRPLTLVVTLD-----DLLIHSDWD 206

Query: 305 --HTLRTISRPPNHFPEGFVTMYMVVMCV---------NTLGTVEALFSLTSGRFFLRCF 159
             H  RT  RP   +  G+++ Y  ++           NT+G ++   +  S   F    
Sbjct: 207 TKHGWRTGKRPGLDYFLGYLSQYYEIVIFGSNYQMYSENTVGKLDPFHAYVSYALFREAC 266

Query: 158 EY 153
            Y
Sbjct: 267 RY 268
tr_hit_id A5B0W4
Definition tr|A5B0W4|A5B0W4_VITVI Putative uncharacterized protein OS=Vitis vinifera
Align length 36
Score (bit) 33.1
E-value 0.012
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP911676|Adiantum capillus-veneris mRNA, clone:
YMU001_000007_H02.
         (601 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A5B0W4|A5B0W4_VITVI Putative uncharacterized protein OS=Vitis...    33   0.012
tr|A5BLB0|A5BLB0_VITVI Putative uncharacterized protein OS=Vitis...    31   1.5  
tr|A8P0X5|A8P0X5_COPC7 Putative uncharacterized protein OS=Copri...    29   1.9  
tr|A5AKW8|A5AKW8_VITVI Putative uncharacterized protein OS=Vitis...    28   2.9  
tr|A5C7V7|A5C7V7_VITVI Putative uncharacterized protein OS=Vitis...    28   4.2  
tr|Q9FWU0|Q9FWU0_ORYSJ Putative gag-pol polyprotein OS=Oryza sat...    35   4.3  
tr|Q7XD57|Q7XD57_ORYSJ Retrotransposon protein, putative, Ty1-co...    35   4.3  
tr|A5BGK7|A5BGK7_VITVI Putative uncharacterized protein OS=Vitis...    28   4.9  
tr|A8N478|A8N478_COPC7 Putative uncharacterized protein OS=Copri...    30   5.1  
tr|A5K141|A5K141_PLAVI Putative uncharacterized protein OS=Plasm...    34   7.5  
tr|A5BM89|A5BM89_VITVI Putative uncharacterized protein OS=Vitis...    27   9.3  
tr|Q17N82|Q17N82_AEDAE Matrix metalloproteinase OS=Aedes aegypti...    33   9.6  

>tr|A5B0W4|A5B0W4_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_038722 PE=4 SV=1
          Length = 566

 Score = 33.1 bits (74), Expect(2) = 0.012
 Identities = 15/36 (41%), Positives = 21/36 (58%)
 Frame = -3

Query: 458 CRDSLAYALTQKNLANLFTNTLPCESLEAFRKPLGL 351
           C   L Y   ++ +A++FT  LP E L  FRK LG+
Sbjct: 520 CEVQLMYCKLEEQVADIFTKALPLEKLVHFRKLLGV 555



 Score = 28.5 bits (62), Expect(2) = 0.012
 Identities = 10/22 (45%), Positives = 17/22 (77%)
 Frame = -1

Query: 514 SYTKHIEMHYNYVKERLSYVEI 449
           S T+HI + Y+++KE +SY E+
Sbjct: 501 SRTRHIVVKYHFIKEAISYCEV 522


>tr|A5BLB0|A5BLB0_VITVI Putative uncharacterized protein OS=Vitis
            vinifera GN=VITISV_024577 PE=4 SV=1
          Length = 1424

 Score = 30.8 bits (68), Expect(2) = 1.5
 Identities = 14/32 (43%), Positives = 20/32 (62%)
 Frame = -3

Query: 446  LAYALTQKNLANLFTNTLPCESLEAFRKPLGL 351
            L Y  +++  A++FT  LP E L  FRK LG+
Sbjct: 1382 LMYCKSEEQXADIFTKALPLEKLVHFRKLLGV 1413



 Score = 23.5 bits (49), Expect(2) = 1.5
 Identities = 9/22 (40%), Positives = 16/22 (72%)
 Frame = -1

Query: 514  SYTKHIEMHYNYVKERLSYVEI 449
            S T+HI + Y+++KE +S  E+
Sbjct: 1359 SRTRHIAVKYHFIKEVISDGEV 1380


>tr|A8P0X5|A8P0X5_COPC7 Putative uncharacterized protein
           OS=Coprinopsis cinerea (strain Okayama-7 / 130 / FGSC
           9003) GN=CC1G_09540 PE=4 SV=1
          Length = 988

 Score = 29.3 bits (64), Expect(2) = 1.9
 Identities = 12/31 (38%), Positives = 22/31 (70%)
 Frame = -2

Query: 594 LGVGQ*SSTLIYTKSQSALTVMRNQVFHTQS 502
           LG+ Q S+T I+T +Q+A+ + R+  FH ++
Sbjct: 895 LGLPQPSTTTIFTDNQAAIAISRHPEFHART 925



 Score = 24.6 bits (52), Expect(2) = 1.9
 Identities = 14/32 (43%), Positives = 17/32 (53%)
 Frame = -3

Query: 440  YALTQKNLANLFTNTLPCESLEAFRKPLGLLP 345
            Y  T  NLA++FT  L   +   F   LGLLP
Sbjct: 948  YINTLDNLADIFTKGLTRTAHNDFTYRLGLLP 979


>tr|A5AKW8|A5AKW8_VITVI Putative uncharacterized protein OS=Vitis
            vinifera GN=VITISV_027864 PE=4 SV=1
          Length = 1300

 Score = 28.1 bits (61), Expect(3) = 2.9
 Identities = 8/20 (40%), Positives = 17/20 (85%)
 Frame = -1

Query: 508  TKHIEMHYNYVKERLSYVEI 449
            TKH+E+HY++++E++   E+
Sbjct: 1236 TKHVEVHYHFIREKVLKEEV 1255



 Score = 22.3 bits (46), Expect(3) = 2.9
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = -2

Query: 564  IYTKSQSALTVMRNQVFHTQS 502
            +Y  +QSA+ +  N VFH ++
Sbjct: 1216 LYCDNQSAVRLAENPVFHART 1236



 Score = 21.2 bits (43), Expect(3) = 2.9
 Identities = 9/32 (28%), Positives = 18/32 (56%)
 Frame = -3

Query: 431  TQKNLANLFTNTLPCESLEAFRKPLGLLPFVD 336
            ++  +A+LFT  L     E+F   LG++  ++
Sbjct: 1262 SEDQVADLFTKGLSGSKFESFCHQLGMVKILE 1293


>tr|A5C7V7|A5C7V7_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_041885 PE=4 SV=1
          Length = 408

 Score = 28.1 bits (61), Expect(3) = 4.2
 Identities = 8/20 (40%), Positives = 17/20 (85%)
 Frame = -1

Query: 508 TKHIEMHYNYVKERLSYVEI 449
           TKH+E+HY++++E++   E+
Sbjct: 344 TKHVEVHYHFIREKVLEEEV 363



 Score = 21.9 bits (45), Expect(3) = 4.2
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = -2

Query: 564 IYTKSQSALTVMRNQVFHTQS 502
           +Y  +QSA+ +  N VFH ++
Sbjct: 324 LYYDNQSAVRLAENPVFHART 344



 Score = 21.2 bits (43), Expect(3) = 4.2
 Identities = 9/32 (28%), Positives = 18/32 (56%)
 Frame = -3

Query: 431 TQKNLANLFTNTLPCESLEAFRKPLGLLPFVD 336
           ++  +A+LFT  L     E+F   LG++  ++
Sbjct: 370 SEDQVADLFTKGLSGSKFESFCHQLGMVKILE 401


>tr|Q9FWU0|Q9FWU0_ORYSJ Putative gag-pol polyprotein OS=Oryza sativa
            subsp. japonica GN=OSJNBa0051D19.15 PE=4 SV=1
          Length = 1408

 Score = 34.7 bits (78), Expect = 4.3
 Identities = 14/35 (40%), Positives = 23/35 (65%)
 Frame = -3

Query: 449  SLAYALTQKNLANLFTNTLPCESLEAFRKPLGLLP 345
            +L Y  T +NLA+ FT  LPC  +++  + +GL+P
Sbjct: 1373 ALDYVQTARNLADQFTKGLPCNVIDSASREMGLIP 1407


>tr|Q7XD57|Q7XD57_ORYSJ Retrotransposon protein, putative, Ty1-copia
            subclass OS=Oryza sativa subsp. japonica
            GN=LOC_Os10g34890 PE=4 SV=2
          Length = 1479

 Score = 34.7 bits (78), Expect = 4.3
 Identities = 14/35 (40%), Positives = 23/35 (65%)
 Frame = -3

Query: 449  SLAYALTQKNLANLFTNTLPCESLEAFRKPLGLLP 345
            +L Y  T +NLA+ FT  LPC  +++  + +GL+P
Sbjct: 1444 ALDYVQTARNLADQFTKGLPCNVIDSASREMGLIP 1478


>tr|A5BGK7|A5BGK7_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_007301 PE=4 SV=1
          Length = 973

 Score = 28.1 bits (61), Expect(3) = 4.9
 Identities = 8/20 (40%), Positives = 17/20 (85%)
 Frame = -1

Query: 508 TKHIEMHYNYVKERLSYVEI 449
           TKH+E+HY++++E++   E+
Sbjct: 909 TKHVEVHYHFIREKVLEEEV 928



 Score = 22.3 bits (46), Expect(3) = 4.9
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = -2

Query: 564 IYTKSQSALTVMRNQVFHTQS 502
           +Y  +QSA+ +  N VFH ++
Sbjct: 889 LYCDNQSAVRLAENPVFHART 909



 Score = 20.4 bits (41), Expect(3) = 4.9
 Identities = 9/32 (28%), Positives = 17/32 (53%)
 Frame = -3

Query: 431  TQKNLANLFTNTLPCESLEAFRKPLGLLPFVD 336
            ++  +A+LFT  L     E F   LG++  ++
Sbjct: 935  SKDQVADLFTKGLSGSKFECFCHQLGMVKILE 966


>tr|A8N478|A8N478_COPC7 Putative uncharacterized protein
            OS=Coprinopsis cinerea (strain Okayama-7 / 130 / FGSC
            9003) GN=CC1G_11409 PE=4 SV=1
          Length = 1449

 Score = 30.0 bits (66), Expect(2) = 5.1
 Identities = 15/32 (46%), Positives = 19/32 (59%)
 Frame = -3

Query: 440  YALTQKNLANLFTNTLPCESLEAFRKPLGLLP 345
            Y  T  NLA++FT  LP  + E F   +GLLP
Sbjct: 1416 YINTHDNLADIFTKALPRPAHEEFVYRIGLLP 1447



 Score = 22.3 bits (46), Expect(2) = 5.1
 Identities = 9/31 (29%), Positives = 19/31 (61%)
 Frame = -2

Query: 594  LGVGQ*SSTLIYTKSQSALTVMRNQVFHTQS 502
            LG    S++ I+T +Q+A+ +  +  FH ++
Sbjct: 1363 LGFPLPSTSTIFTDNQAAIAIAHHPEFHART 1393


>tr|A5K141|A5K141_PLAVI Putative uncharacterized protein OS=Plasmodium
            vivax GN=PVX_085510 PE=4 SV=1
          Length = 2081

 Score = 33.9 bits (76), Expect = 7.5
 Identities = 17/48 (35%), Positives = 24/48 (50%)
 Frame = +2

Query: 362  VCEKLRDSHKAMYL*KDLQGFSVSEHKPSYLYI*ESLLDIVIMHLNVL 505
            VC  L   H  ++L KD+    V+ +K  YLY+ +SL   V  H   L
Sbjct: 1545 VCSSLMSRHNNLFLKKDVSNVDVTVNKHLYLYLTDSLYSSVNRHFEFL 1592