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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP911683
Clone id YMU001_000007_H10
Library
Length 433
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000007_H10.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
GAGATATTACCTGCAGGTACTCTGAAGGTGCAGTGCATTGCAGATTCTTGCCGGATAGGG
CAGCTAGGGACAGGTGGTCCAAGGTGATGTCAGTGTATAGACGCGTAGTGCTCAATTTAT
GGAGCATGCTAGTCTTTTCAGATTGCAGATCGGAGCTACAGATTGTTGGATATGGCCATT
TGAAGTTTTGCCAGGGGTCCGGTTGATGCCCACGTGATTGCATGGGGGGCCGTGCCATAT
GGTATTTGTTGGACTTCGACAGAGTTCTAGAGCGAGGTATGCATCATATGGACTTAGCAG
GGATTGACTGCTTGTCAAACGGAGTTCGGAGCGGAAAGTTATGGAAGTCGGAAGGTCGGG
TGCAGTTGCTCGGAGTTAATTGCAGATGAAATCTAGCATTTGGGTGGCCTCGGTTCGGGA
TTTTGGGGAATCT
■■Homology search results ■■ -
sp_hit_id P22807
Definition sp|P22807|SLOU_DROME Homeobox protein slou OS=Drosophila melanogaster
Align length 124
Score (bit) 33.1
E-value 0.51
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP911683|Adiantum capillus-veneris mRNA, clone:
YMU001_000007_H10.
         (433 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P22807|SLOU_DROME Homeobox protein slou OS=Drosophila melanog...    33   0.51 
sp|Q4WYE5|MUS81_ASPFU Crossover junction endonuclease mus81 OS=A...    30   3.3  
sp|P03290|Y115_ADE02 Uncharacterized protein E-115 OS=Human aden...    30   4.3  
sp|Q9PU36|PCLO_CHICK Protein piccolo (Fragment) OS=Gallus gallus...    29   7.1  
sp|P09245|MCP_VZVD Major capsid protein OS=Varicella-zoster viru...    29   7.3  
sp|Q9BLJ6|BAGS_BOMMO BAG domain-containing protein Samui OS=Bomb...    29   7.3  
sp|A5D5G9|RL6_PELTS 50S ribosomal protein L6 OS=Pelotomaculum th...    29   9.3  
sp|Q12221|PUF2_YEAST Protein PUF2 OS=Saccharomyces cerevisiae GN...    29   9.6  

>sp|P22807|SLOU_DROME Homeobox protein slou OS=Drosophila
           melanogaster GN=slou PE=2 SV=1
          Length = 659

 Score = 33.1 bits (74), Expect = 0.51
 Identities = 30/124 (24%), Positives = 49/124 (39%), Gaps = 2/124 (1%)
 Frame = -1

Query: 406 HPNARFHLQLTPSNCTRPSDFHNFPLRTPFDKQSIPAKSI*CIPRSRTLSKSNKYHMARP 227
           HP+A FHL+   S+ T P      P  +P    + PA               N  H ++P
Sbjct: 233 HPSAVFHLRAPSSSSTAPPS----PATSPLSPPTSPAMHSDQQMSPPIAPPQNPPHSSQP 288

Query: 226 PMQSRGHQPDPW--QNFKWPYPTICSSDLQSEKTSMLHKLSTTRLYTDITLDHLSLAALS 53
           P Q +   P     +  K     + +   Q+  TS L   S +     I++ + S  + S
Sbjct: 289 PQQQQVAAPSDMDLERIKL-VAAVAARTTQASSTSALASASNSVSNASISISNSSSGSPS 347

Query: 52  GKNL 41
           G++L
Sbjct: 348 GRDL 351


>sp|Q4WYE5|MUS81_ASPFU Crossover junction endonuclease mus81
           OS=Aspergillus fumigatus GN=mus81 PE=3 SV=1
          Length = 596

 Score = 30.4 bits (67), Expect = 3.3
 Identities = 15/39 (38%), Positives = 22/39 (56%)
 Frame = -2

Query: 375 LRATAPDLPTSITFRSELRLTSSQSLLSPYDAYLALELC 259
           LRA  P +  S+TF +   LTS   +LS  D +L + +C
Sbjct: 491 LRARDPSVTYSVTFSTFSALTSKSDILSLRDVFLKMLMC 529


>sp|P03290|Y115_ADE02 Uncharacterized protein E-115 OS=Human
           adenovirus C serotype 2 PE=4 SV=1
          Length = 115

 Score = 30.0 bits (66), Expect = 4.3
 Identities = 21/77 (27%), Positives = 26/77 (33%), Gaps = 8/77 (10%)
 Frame = -1

Query: 379 LTPSNCTRPSDFHNFPLRTPFDKQSIPAKSI*CIPRSRTLSKSNKYHMARPPMQS----- 215
           LTP+  + P  ++  P   P  +   P       P S  L        A PP  S     
Sbjct: 7   LTPNGQSSPGSWNARPSAGPAARMPTPRNRYFSRPSSTPLKVCTAPRAAPPPRASCAPRA 66

Query: 214 ---RGHQPDPWQNFKWP 173
              RG    PW N  WP
Sbjct: 67  TPRRGWTMTPWSNATWP 83


>sp|Q9PU36|PCLO_CHICK Protein piccolo (Fragment) OS=Gallus gallus
            GN=PCLO PE=2 SV=1
          Length = 5120

 Score = 29.3 bits (64), Expect = 7.1
 Identities = 10/24 (41%), Positives = 18/24 (75%)
 Frame = -3

Query: 236  GTAPHAITWASTGPLAKLQMAISN 165
            GT+ HA+TWA+T P+    ++++N
Sbjct: 2768 GTSAHAVTWAATKPVTVPPVSVTN 2791


>sp|P09245|MCP_VZVD Major capsid protein OS=Varicella-zoster virus
            (strain Dumas) GN=40 PE=3 SV=1
          Length = 1396

 Score = 29.3 bits (64), Expect = 7.3
 Identities = 16/44 (36%), Positives = 22/44 (50%)
 Frame = -1

Query: 259  SKSNKYHMARPPMQSRGHQPDPWQNFKWPYPTICSSDLQSEKTS 128
            S   +Y   RPP  +   Q DP   F+  YP +CSSD    +T+
Sbjct: 1323 STDTEYQFKRPPGSTEMTQ-DPCGLFQEAYPPLCSSDAAMLRTA 1365


>sp|Q9BLJ6|BAGS_BOMMO BAG domain-containing protein Samui OS=Bombyx
           mori GN=Samui PE=2 SV=1
          Length = 677

 Score = 29.3 bits (64), Expect = 7.3
 Identities = 19/78 (24%), Positives = 30/78 (38%)
 Frame = -1

Query: 427 PKIPNRGHPNARFHLQLTPSNCTRPSDFHNFPLRTPFDKQSIPAKSI*CIPRSRTLSKSN 248
           P +  + +P   F    +P     P       ++ P   ++  A+     P SR   KS 
Sbjct: 280 PFVQQKAYPQTAFARGASPQRSQSPKPTDEHFVKVPVHHETPKAE-----PPSRA-QKSP 333

Query: 247 KYHMARPPMQSRGHQPDP 194
           + H   PP   + HQP P
Sbjct: 334 QQHQPPPPKSPQQHQPPP 351


>sp|A5D5G9|RL6_PELTS 50S ribosomal protein L6 OS=Pelotomaculum
           thermopropionicum (strain DSM 13744 / JCM 10971 / SI)
           GN=rplF PE=3 SV=1
          Length = 182

 Score = 28.9 bits (63), Expect = 9.3
 Identities = 18/66 (27%), Positives = 33/66 (50%)
 Frame = +3

Query: 3   DITCRYSEGAVHCRFLPDRAARDRWSKVMSVYRRVVLNLWSMLVFSDCRSELQIVGYGHL 182
           D+  +Y +G    R + +R A D+  K +    R +LN   + V +  +  L++VG G+ 
Sbjct: 40  DMIIKYEDG----RLIVERPANDKLHKSLHGLTRTLLNNMVVGVTAGFQKNLELVGVGYR 95

Query: 183 KFCQGS 200
              QG+
Sbjct: 96  ASKQGN 101


>sp|Q12221|PUF2_YEAST Protein PUF2 OS=Saccharomyces cerevisiae
           GN=PUF2 PE=1 SV=1
          Length = 1075

 Score = 28.9 bits (63), Expect = 9.6
 Identities = 21/67 (31%), Positives = 33/67 (49%), Gaps = 2/67 (2%)
 Frame = -1

Query: 226 PMQSRGH-QPDPWQNFKWPYPTICSSDLQSEKTSMLHKLSTTRL-YTDITLDHLSLAALS 53
           P Q+  H Q    +N  +P+P +    L   K  +LH +S+ +L Y  + L+HL   AL 
Sbjct: 463 PTQNLSHLQLSSNENEPYPFP-LPPPSLSDSKKDILHTISSFKLEYDHLELNHLLQNALK 521

Query: 52  GKNLQCT 32
            K +  T
Sbjct: 522 NKGVSDT 528
tr_hit_id A5BQK0
Definition tr|A5BQK0|A5BQK0_VITVI Putative uncharacterized protein OS=Vitis vinifera
Align length 64
Score (bit) 33.5
E-value 5.4
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP911683|Adiantum capillus-veneris mRNA, clone:
YMU001_000007_H10.
         (433 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A5BQK0|A5BQK0_VITVI Putative uncharacterized protein OS=Vitis...    33   5.4  
tr|A9BZQ8|A9BZQ8_DELAS Major facilitator superfamily MFS_1 OS=De...    33   9.3  
tr|A2FXD0|A2FXD0_TRIVA Copine family protein OS=Trichomonas vagi...    33   9.3  

>tr|A5BQK0|A5BQK0_VITVI Putative uncharacterized protein OS=Vitis
            vinifera GN=VITISV_041829 PE=4 SV=1
          Length = 1593

 Score = 33.5 bits (75), Expect = 5.4
 Identities = 20/64 (31%), Positives = 30/64 (46%)
 Frame = -2

Query: 384  CN*LRATAPDLPTSITFRSELRLTSSQSLLSPYDAYLALELCRSPTNTIWHGPPCNHVGI 205
            C+ LR     + TS+ +R +L     +S LS  D + AL +     ++IW   P  H G 
Sbjct: 1337 CSYLRCINSRIITSVKYRLDLLYVPIESFLSYQDKWDALVVILGAASSIWRSDPYFHFGH 1396

Query: 204  NRTP 193
              TP
Sbjct: 1397 LITP 1400


>tr|A9BZQ8|A9BZQ8_DELAS Major facilitator superfamily MFS_1
           OS=Delftia acidovorans (strain DSM 14801 / SPH-1)
           GN=Daci_3328 PE=4 SV=1
          Length = 513

 Score = 32.7 bits (73), Expect = 9.3
 Identities = 32/100 (32%), Positives = 44/100 (44%), Gaps = 9/100 (9%)
 Frame = -2

Query: 396 LDFICN*LRATAPDLPTSITFR------SELRLTSSQSLLSPY---DAYLALELCRSPTN 244
           L F     RAT P LP S+         S L L++  +L +       YL + L  SPT 
Sbjct: 258 LAFFVRQRRATHPLLPLSLFAHPAYAAVSFLALSTGVALYAAVVFLPQYLQIGLHLSPTG 317

Query: 243 TIWHGPPCNHVGINRTPGKTSNGHIQQSVAPICNLKRLAC 124
           + WH  P    GI  T G   +G   ++  P  +L R+AC
Sbjct: 318 SAWHLAPL-MAGI--TAGAIGSGRRLRAQTPAASLARVAC 354


>tr|A2FXD0|A2FXD0_TRIVA Copine family protein OS=Trichomonas
           vaginalis G3 GN=TVAG_304980 PE=4 SV=1
          Length = 531

 Score = 32.7 bits (73), Expect = 9.3
 Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
 Frame = -1

Query: 262 LSKSNKYHMARPPMQSRGHQPDPWQNFKWPYPTICSSD-LQSEKTSMLHKLSTT 104
           +SK ++     P  QS   +   W+ F  PY T+C+ D  +  K S++H  STT
Sbjct: 186 ISKGSESGSFLPVFQSEVSKKCQWKKFSIPYQTLCNCDPARPLKISVMHYRSTT 239