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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP911695
Clone id YMU001_000008_B02
Library
Length 365
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000008_B02.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
AACGCTCCTGCACTATAGCATGCAAAAAATTCCTGCCTGTACACTCATTTCACAACTACA
TGTGTGTGGACACTCAGACCTAGGACATTTCCGAGGATCATGTTGTACATGTCTGCAACT
CATTTTCGAACTGATCCTAAACACTAAGCTACTTACTGACATCACCAGCATAAACGACAC
CAATGTGAAAATCGTTACACATCGAATTGCTCGTAAAACTGGAAGCACCTTTAAAATGTT
TCCAGTAATTTGGCCCCGGTGCTTCAATGCAGTTGTCACAAATTTTGGCTATCAAGGCCT
CCCTCGCCACGTATTTTGGCCATTGAAGCCTCCCCGTCCCTGACCAAAATTCCTGCCATC
TCTAC
■■Homology search results ■■ -
sp_hit_id Q3MEJ8
Definition sp|Q3MEJ8|PANCY_ANAVT Bifunctional pantoate ligase/cytidylate kinase OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937)
Align length 34
Score (bit) 30.8
E-value 2.2
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP911695|Adiantum capillus-veneris mRNA, clone:
YMU001_000008_B02.
         (365 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q3MEJ8|PANCY_ANAVT Bifunctional pantoate ligase/cytidylate ki...    31   2.2  
sp|Q8YSZ3|PANCY_ANASP Bifunctional pantoate ligase/cytidylate ki...    31   2.2  
sp|Q8CT84|PPI1_STAES Putative peptidyl-prolyl cis-trans isomeras...    30   3.8  
sp|Q5HQK8|PPI1_STAEQ Putative peptidyl-prolyl cis-trans isomeras...    30   3.8  
sp|Q61554|FBN1_MOUSE Fibrillin-1 OS=Mus musculus GN=Fbn1 PE=1 SV=1     30   3.8  
sp|A5IN99|PANC_THEP1 Pantothenate synthetase OS=Thermotoga petro...    30   4.9  
sp|Q9X0G6|PANC_THEMA Pantothenate synthetase OS=Thermotoga marit...    30   4.9  
sp|A8F7T6|PANC_THELT Pantothenate synthetase OS=Thermotoga letti...    30   4.9  
sp|Q9TV36|FBN1_PIG Fibrillin-1 OS=Sus scrofa GN=FBN1 PE=2 SV=1         29   6.4  
sp|P35555|FBN1_HUMAN Fibrillin-1 OS=Homo sapiens GN=FBN1 PE=1 SV=1     29   6.4  
sp|P98133|FBN1_BOVIN Fibrillin-1 OS=Bos taurus GN=FBN1 PE=1 SV=1       29   6.4  
sp|Q4L4W9|PPI1_STAHJ Putative peptidyl-prolyl cis-trans isomeras...    29   8.4  

>sp|Q3MEJ8|PANCY_ANAVT Bifunctional pantoate ligase/cytidylate
           kinase OS=Anabaena variabilis (strain ATCC 29413 / PCC
           7937) GN=panC/cmk PE=3 SV=1
          Length = 534

 Score = 30.8 bits (68), Expect = 2.2
 Identities = 16/34 (47%), Positives = 20/34 (58%)
 Frame = +2

Query: 23  QKIPACTLISQLHVCGHSDLGHFRGSCCTCLQLI 124
           Q IP   +IS L  CGHS LGHF+G      +L+
Sbjct: 130 QVIPPSVMISGL--CGHSRLGHFQGVATIVTKLL 161


>sp|Q8YSZ3|PANCY_ANASP Bifunctional pantoate ligase/cytidylate
           kinase OS=Anabaena sp. (strain PCC 7120) GN=panC/cmk
           PE=3 SV=1
          Length = 534

 Score = 30.8 bits (68), Expect = 2.2
 Identities = 16/34 (47%), Positives = 20/34 (58%)
 Frame = +2

Query: 23  QKIPACTLISQLHVCGHSDLGHFRGSCCTCLQLI 124
           Q IP   +IS L  CGHS LGHF+G      +L+
Sbjct: 130 QVIPPSVMISGL--CGHSRLGHFQGVATIVTKLL 161


>sp|Q8CT84|PPI1_STAES Putative peptidyl-prolyl cis-trans isomerase
           OS=Staphylococcus epidermidis (strain ATCC 12228)
           GN=SE_0648 PE=3 SV=1
          Length = 197

 Score = 30.0 bits (66), Expect = 3.8
 Identities = 19/50 (38%), Positives = 24/50 (48%), Gaps = 3/50 (6%)
 Frame = +2

Query: 170 INDTNVKIVTHRIARKTGSTFKMFPVIWPRCFNAVVT---NFGYQGLPRH 310
           I D  +K+V H    K   TFK+FP I P+     VT   N  Y G+  H
Sbjct: 11  IQDNEIKVVMH--TNKGDMTFKLFPDIAPKTVENFVTHSKNGYYDGVTFH 58


>sp|Q5HQK8|PPI1_STAEQ Putative peptidyl-prolyl cis-trans isomerase
           OS=Staphylococcus epidermidis (strain ATCC 35984 /
           RP62A) GN=SERP0540 PE=3 SV=1
          Length = 197

 Score = 30.0 bits (66), Expect = 3.8
 Identities = 19/50 (38%), Positives = 24/50 (48%), Gaps = 3/50 (6%)
 Frame = +2

Query: 170 INDTNVKIVTHRIARKTGSTFKMFPVIWPRCFNAVVT---NFGYQGLPRH 310
           I D  +K+V H    K   TFK+FP I P+     VT   N  Y G+  H
Sbjct: 11  IQDNEIKVVMH--TNKGDMTFKLFPDIAPKTVENFVTHSKNGYYDGVTFH 58


>sp|Q61554|FBN1_MOUSE Fibrillin-1 OS=Mus musculus GN=Fbn1 PE=1 SV=1
          Length = 2871

 Score = 30.0 bits (66), Expect = 3.8
 Identities = 16/52 (30%), Positives = 25/52 (48%)
 Frame = +1

Query: 184 CENRYTSNCS*NWKHL*NVSSNLAPVLQCSCHKFWLSRPPSPRILAIEASPS 339
           C +RY + C   WK L   +  + P+ + SC   + SRP      + + SPS
Sbjct: 59  CGSRYNAYCCPGWKTLPGGNQCIVPICRHSCGDGFCSRPNMCTCPSGQISPS 110


>sp|A5IN99|PANC_THEP1 Pantothenate synthetase OS=Thermotoga
           petrophila (strain RKU-1 / ATCC BAA-488 / DSM 13995)
           GN=panC PE=3 SV=1
          Length = 280

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = +2

Query: 59  HVCGHSDLGHFRGSCCTCLQLIFELI 136
           H+CG S  GHFRG  CT +  +F ++
Sbjct: 115 HLCGRSRPGHFRG-VCTVVTKLFNIV 139


>sp|Q9X0G6|PANC_THEMA Pantothenate synthetase OS=Thermotoga maritima
           GN=panC PE=1 SV=1
          Length = 280

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = +2

Query: 59  HVCGHSDLGHFRGSCCTCLQLIFELI 136
           H+CG S  GHFRG  CT +  +F ++
Sbjct: 115 HLCGRSRPGHFRG-VCTVVTKLFNIV 139


>sp|A8F7T6|PANC_THELT Pantothenate synthetase OS=Thermotoga
           lettingae (strain ATCC BAA-301 / DSM 14385 / TMO)
           GN=panC PE=3 SV=1
          Length = 281

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = +2

Query: 59  HVCGHSDLGHFRGSCCTCLQLIFELI 136
           H+CG S  GHFRG  CT +  +F ++
Sbjct: 114 HLCGRSRPGHFRG-VCTVVTKLFNIV 138


>sp|Q9TV36|FBN1_PIG Fibrillin-1 OS=Sus scrofa GN=FBN1 PE=2 SV=1
          Length = 2871

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = +1

Query: 184 CENRYTSNCS*NWKHL*NVSSNLAPVLQCSCHKFWLSRP 300
           C +RY + C   WK L   +  + P+ + SC   + SRP
Sbjct: 59  CGSRYNAYCCPGWKTLPGGNQCIVPICRHSCGDGFCSRP 97


>sp|P35555|FBN1_HUMAN Fibrillin-1 OS=Homo sapiens GN=FBN1 PE=1 SV=1
          Length = 2871

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = +1

Query: 184 CENRYTSNCS*NWKHL*NVSSNLAPVLQCSCHKFWLSRP 300
           C +RY + C   WK L   +  + P+ + SC   + SRP
Sbjct: 59  CGSRYNAYCCPGWKTLPGGNQCIVPICRHSCGDGFCSRP 97
tr_hit_id Q6BZ15
Definition tr|Q6BZ15|Q6BZ15_DEBHA DEHA2A05346p OS=Debaryomyces hansenii
Align length 80
Score (bit) 34.7
E-value 2.4
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP911695|Adiantum capillus-veneris mRNA, clone:
YMU001_000008_B02.
         (365 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q6BZ15|Q6BZ15_DEBHA DEHA2A05346p OS=Debaryomyces hansenii GN=...    35   2.4  

>tr|Q6BZ15|Q6BZ15_DEBHA DEHA2A05346p OS=Debaryomyces hansenii
           GN=DEHA2A05346g PE=4 SV=2
          Length = 602

 Score = 34.7 bits (78), Expect = 2.4
 Identities = 25/80 (31%), Positives = 37/80 (46%), Gaps = 3/80 (3%)
 Frame = +2

Query: 2   TLLHYSMQKIPACTLISQL---HVCGHSDLGHFRGSCCTCLQLIFELILNTKLLTDITSI 172
           TLLH  + KIP   L ++L   ++    +LGH+ GSC    +LI      +   T I   
Sbjct: 166 TLLHILLDKIPNFNLSNELWSYYISKTCELGHYLGSCLIYHELIDNHQTRSGESTGINFQ 225

Query: 173 NDTNVKIVTHRIARKTGSTF 232
           N     +V + +  K GS F
Sbjct: 226 NSYIPFLVANSLLEKLGSIF 245