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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP911700
Clone id YMU001_000008_B07
Library
Length 561
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000008_B07.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
AATGGCAACCCAACTAACCTTCTATTGATCGAATGAGTGCACTTCAACTGTCAATATGGT
AAACAATTACAGAAACTAGTCTACATCGACCTTGCTTAGTGCACCACTGGCACTCTTTGC
AATAATTCATAAAGACAATGGCAGTGGTATAAAAGGGACTTGCTCAATCTTTGCAGAACT
CAACCATGTGTTTGTGACATCGACAAAACTCGGTGTTGCAAACTGCAAAATGTCAGAATC
CTTCATCTTTTTCGACCAAGCAACCCGCTTGGAAGTGTCACTTCCAGGGTCCATGGCACC
TACAACCAAACCACAGGATGCAAGTAATAATACTGATTGCAAATAGAGAATAATAGAAAG
AATTGTTTTTTTCCATTAGAAAAGAATCTTTACTGCCATATGTGCAAATTGATCAATCAG
CACAAAATCTCCGTGCACACATGGAGGACTATCATACATATGCACTAAAGAGAATATACC
TGTATTCATAATACTCAGCAGTCTTTTCATTCTCTGCATTACCCCAATTATTCCAACCCT
CTGGCCTGATGCATGCATCCA
■■Homology search results ■■ -
sp_hit_id Q3B6D2
Definition sp|Q3B6D2|SYC_PELLD Cysteinyl-tRNA synthetase OS=Pelodictyon luteolum (strain DSM 273)
Align length 111
Score (bit) 32.7
E-value 1.3
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP911700|Adiantum capillus-veneris mRNA, clone:
YMU001_000008_B07.
         (561 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q3B6D2|SYC_PELLD Cysteinyl-tRNA synthetase OS=Pelodictyon lut...    33   1.3  
sp|Q492J8|SYM_BLOPB Methionyl-tRNA synthetase OS=Blochmannia pen...    30   6.3  

>sp|Q3B6D2|SYC_PELLD Cysteinyl-tRNA synthetase OS=Pelodictyon
           luteolum (strain DSM 273) GN=cysS PE=3 SV=1
          Length = 483

 Score = 32.7 bits (73), Expect = 1.3
 Identities = 28/111 (25%), Positives = 50/111 (45%)
 Frame = -1

Query: 531 IIGVMQRMKRLLSIMNTGIFSLVHMYDSPPCVHGDFVLIDQFAHMAVKILF*WKKTILSI 352
           I   + R K+L   ++ G+   V +Y   P V+G   L    ++++  ++  W +     
Sbjct: 5   IFNSLGREKQLFEPLHPGV---VGIYVCGPTVYGHAHLGHAKSYVSFDVVVRWLRESGYR 61

Query: 351 ILYLQSVLLLASCGLVVGAMDPGSDTSKRVAWSKKMKDSDILQFATPSFVD 199
           + Y+Q++      G +    D G D   R A  +K    +I QF T SF+D
Sbjct: 62  VKYVQNI---TDVGHLSDDADEGEDKIARQARLEKTDPMEIAQFYTRSFLD 109


>sp|Q492J8|SYM_BLOPB Methionyl-tRNA synthetase OS=Blochmannia
           pennsylvanicus (strain BPEN) GN=metG PE=3 SV=1
          Length = 555

 Score = 30.4 bits (67), Expect = 6.3
 Identities = 15/54 (27%), Positives = 28/54 (51%)
 Frame = -1

Query: 321 ASCGLVVGAMDPGSDTSKRVAWSKKMKDSDILQFATPSFVDVTNTWLSSAKIEQ 160
           A+CG +  +++  +  S     S  ++ S+ L F  P+F D   TW+ S  I++
Sbjct: 158 AACGTIYTSLELINPKSVISGTSPIIRKSEHLFFDLPAFTDTLRTWIRSGSIQK 211
tr_hit_id B2Y4N5
Definition tr|B2Y4N5|B2Y4N5_ARAHA Putative pectinesterase family protein OS=Arabidopsis halleri subsp. halleri
Align length 46
Score (bit) 43.1
E-value 0.01
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP911700|Adiantum capillus-veneris mRNA, clone:
YMU001_000008_B07.
         (561 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B2Y4N5|B2Y4N5_ARAHA Putative pectinesterase family protein OS...    43   0.010
tr|A9SWM6|A9SWM6_PHYPA Pectinesterase OS=Physcomitrella patens s...    42   0.018
tr|O64479|O64479_ARATH Putative pectinesterase OS=Arabidopsis th...    41   0.051
tr|Q4PSQ5|Q4PSQ5_ARATH Pectinesterase family protein OS=Arabidop...    40   0.088
tr|O22902|O22902_ARATH Putative pectinesterase OS=Arabidopsis th...    40   0.088
tr|A7PMZ9|A7PMZ9_VITVI Pectinesterase OS=Vitis vinifera GN=GSVIV...    39   0.15 
tr|B3JN64|B3JN64_9BACE Putative uncharacterized protein OS=Bacte...    36   1.7  
tr|A9RSM5|A9RSM5_PHYPA Pectinesterase OS=Physcomitrella patens s...    35   2.2  
tr|A7PBL1|A7PBL1_VITVI Pectinesterase OS=Vitis vinifera GN=GSVIV...    35   2.2  
tr|A3BMZ0|A3BMZ0_ORYSJ Putative uncharacterized protein OS=Oryza...    35   2.2  
tr|B3K4U9|B3K4U9_9BACI Cytochrome c oxidase assembly factor CtaG...    35   3.7  
tr|Q0E358|Q0E358_ORYSJ Os02g0193000 protein OS=Oryza sativa subs...    35   3.7  
tr|A7PBL4|A7PBL4_VITVI Pectinesterase OS=Vitis vinifera GN=GSVIV...    35   3.7  
tr|A7PBL3|A7PBL3_VITVI Pectinesterase OS=Vitis vinifera GN=GSVIV...    35   3.7  
tr|A5AEF1|A5AEF1_VITVI Putative uncharacterized protein OS=Vitis...    35   3.7  
tr|A2X1X5|A2X1X5_ORYSI Putative uncharacterized protein OS=Oryza...    35   3.7  
tr|A4AP95|A4AP95_9FLAO Putative uncharacterized protein OS=Flavo...    34   4.7  
tr|Q9K8S8|Q9K8S8_BACHD Maltose/maltodextrin transport system (Pe...    34   4.8  
tr|Q27U79|Q27U79_EUCGG Pectin methylesterase (Fragment) OS=Eucal...    34   4.8  
tr|A1BJ03|A1BJ03_CHLPD Cysteinyl-tRNA synthetase OS=Chlorobium p...    33   8.2  

>tr|B2Y4N5|B2Y4N5_ARAHA Putative pectinesterase family protein
           OS=Arabidopsis halleri subsp. halleri GN=17L07.7 PE=4
           SV=1
          Length = 344

 Score = 43.1 bits (100), Expect = 0.010
 Identities = 21/46 (45%), Positives = 27/46 (58%)
 Frame = -1

Query: 300 GAMDPGSDTSKRVAWSKKMKDSDILQFATPSFVDVTNTWLSSAKIE 163
           G    G+DTSKRV W KK  + D+LQF   +F+D    WLS   I+
Sbjct: 299 GCTGVGADTSKRVPWLKKASEKDVLQFTNLTFID-EEGWLSRLPIK 343


>tr|A9SWM6|A9SWM6_PHYPA Pectinesterase OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_189145 PE=3 SV=1
          Length = 322

 Score = 42.4 bits (98), Expect = 0.018
 Identities = 15/42 (35%), Positives = 28/42 (66%)
 Frame = -1

Query: 288 PGSDTSKRVAWSKKMKDSDILQFATPSFVDVTNTWLSSAKIE 163
           PGSD ++RV W +K+ D++  +F +  F+D   TWL+ + ++
Sbjct: 271 PGSDVTQRVPWMRKLTDAEAARFLSVDFIDQQRTWLTRSPLK 312


>tr|O64479|O64479_ARATH Putative pectinesterase OS=Arabidopsis
           thaliana GN=At2g19150 PE=2 SV=1
          Length = 339

 Score = 40.8 bits (94), Expect = 0.051
 Identities = 20/46 (43%), Positives = 26/46 (56%)
 Frame = -1

Query: 300 GAMDPGSDTSKRVAWSKKMKDSDILQFATPSFVDVTNTWLSSAKIE 163
           G    G+DTSKRV W  K  + D+LQF   +F+D    WLS   I+
Sbjct: 294 GCTGVGADTSKRVPWLTKASEKDVLQFTNLTFID-EEGWLSRLPIK 338


>tr|Q4PSQ5|Q4PSQ5_ARATH Pectinesterase family protein OS=Arabidopsis
           thaliana GN=At2g47280 PE=2 SV=1
          Length = 320

 Score = 40.0 bits (92), Expect = 0.088
 Identities = 21/49 (42%), Positives = 30/49 (61%)
 Frame = -1

Query: 300 GAMDPGSDTSKRVAWSKKMKDSDILQFATPSFVDVTNTWLSSAKIEQVP 154
           G    G+DTS+RV W KK+  S++  FA+ SF+D  + W+S   IE  P
Sbjct: 273 GCTGAGADTSQRVPWLKKLSLSEVDGFASVSFID-QDGWISRFPIEGGP 320


>tr|O22902|O22902_ARATH Putative pectinesterase OS=Arabidopsis
           thaliana GN=At2g47280 PE=2 SV=1
          Length = 247

 Score = 40.0 bits (92), Expect = 0.088
 Identities = 21/49 (42%), Positives = 30/49 (61%)
 Frame = -1

Query: 300 GAMDPGSDTSKRVAWSKKMKDSDILQFATPSFVDVTNTWLSSAKIEQVP 154
           G    G+DTS+RV W KK+  S++  FA+ SF+D  + W+S   IE  P
Sbjct: 200 GCTGAGADTSQRVPWLKKLSLSEVDGFASVSFID-QDGWISRFPIEGGP 247


>tr|A7PMZ9|A7PMZ9_VITVI Pectinesterase OS=Vitis vinifera
           GN=GSVIVT00021009001 PE=3 SV=1
          Length = 316

 Score = 39.3 bits (90), Expect = 0.15
 Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
 Frame = -1

Query: 321 ASCGLVVGAMDPGSDTSKRVAWSKKMKDSDILQFATPSFV--DVTNTWLSSAKIEQVPF 151
           ++C        PGS  SKRV W++++ D +  QF   SF+  DV   WL+     ++P+
Sbjct: 256 SACFYEYRCFGPGSCPSKRVTWARELVDEEAEQFLMHSFIDPDVERPWLAQRMALRIPY 314


>tr|B3JN64|B3JN64_9BACE Putative uncharacterized protein
           OS=Bacteroides coprocola DSM 17136 GN=BACCOP_03376 PE=4
           SV=1
          Length = 699

 Score = 35.8 bits (81), Expect = 1.7
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = -1

Query: 285 GSDTSKRVAWSKKMKDSDILQFATPSFVDVTNTW 184
           G+D S+RV+W++++ D D+       F   +NTW
Sbjct: 663 GADISQRVSWARQLSDKDVKMLVKSEFYTFSNTW 696


>tr|A9RSM5|A9RSM5_PHYPA Pectinesterase OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_118762 PE=3 SV=1
          Length = 336

 Score = 35.4 bits (80), Expect = 2.2
 Identities = 15/41 (36%), Positives = 26/41 (63%)
 Frame = -1

Query: 288 PGSDTSKRVAWSKKMKDSDILQFATPSFVDVTNTWLSSAKI 166
           PG+DT++RV+WSK++  ++  +F   SF+     WL +  I
Sbjct: 291 PGADTARRVSWSKQISIAEASKFTVSSFI-AGQEWLPATSI 330


>tr|A7PBL1|A7PBL1_VITVI Pectinesterase OS=Vitis vinifera
           GN=GSVIVT00014144001 PE=3 SV=1
          Length = 241

 Score = 35.4 bits (80), Expect = 2.2
 Identities = 16/38 (42%), Positives = 25/38 (65%)
 Frame = -1

Query: 294 MDPGSDTSKRVAWSKKMKDSDILQFATPSFVDVTNTWL 181
           M PG+DTSKR  ++K++ D     F T +++D  +TWL
Sbjct: 196 MGPGADTSKRSKFTKELDDDGATPFITLNYID-ASTWL 232


>tr|A3BMZ0|A3BMZ0_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_024412 PE=3 SV=1
          Length = 363

 Score = 35.4 bits (80), Expect = 2.2
 Identities = 16/41 (39%), Positives = 25/41 (60%)
 Frame = -1

Query: 300 GAMDPGSDTSKRVAWSKKMKDSDILQFATPSFVDVTNTWLS 178
           G   PG++ + RVAW K++ D  + +F   SF+D  + WLS
Sbjct: 320 GCEGPGANKTGRVAWEKQLDDDQVHKFVDISFID--DGWLS 358