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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP911707
Clone id YMU001_000008_C02
Library
Length 307
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000008_C02.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
CGTGTCTTGACTTTGAAACAGTGGCACGGATGCATGTAACATCCTAACCATGCTTATATT
GAGCTTGTGAGCTGTGGTATGCCTTCACAGCATGATTACTCGAGAAAAATCTCTTTAGAG
ATGCTGAATTTGGAAACAATGACGCAAAATGCTCTGAATGGTGGTGCTTTGCCGACCAGC
TCAGCTGGACCAAATCAGAGCTCTGTGAGACCTTCAGAGTCTGGTAATATACTTCTTTGG
CACCTCTCTTTGATCAGAGCTTTTGCTGTTGGGTGTAGTACTTTGTTCTGACAAGTACTA
TGTTGGG
■■Homology search results ■■ -
sp_hit_id P38269
Definition sp|P38269|YBX4_YEAST Putative uncharacterized protein YBR124W OS=Saccharomyces cerevisiae
Align length 79
Score (bit) 31.6
E-value 1.3
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP911707|Adiantum capillus-veneris mRNA, clone:
YMU001_000008_C02.
         (307 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P38269|YBX4_YEAST Putative uncharacterized protein YBR124W OS...    32   1.3  
sp|P81922|OR47B_DROME Odorant receptor 47b OS=Drosophila melanog...    30   3.8  
sp|A3PCW7|G6PI_PROM0 Glucose-6-phosphate isomerase OS=Prochloroc...    30   3.8  
sp|Q8CPE9|MUTL_STAES DNA mismatch repair protein mutL OS=Staphyl...    29   6.4  
sp|Q5HPP4|MUTL_STAEQ DNA mismatch repair protein mutL OS=Staphyl...    29   6.4  
sp|O13024|INCEA_XENLA Inner centromere protein A OS=Xenopus laev...    29   6.4  
sp|Q5YYX8|MURC_NOCFA UDP-N-acetylmuramate--L-alanine ligase OS=N...    29   8.4  
sp|P32334|MSB2_YEAST Protein MSB2 OS=Saccharomyces cerevisiae GN...    29   8.4  
sp|Q58652|Y1255_METJA Uncharacterized glycosyltransferase MJ1255...    29   8.4  

>sp|P38269|YBX4_YEAST Putative uncharacterized protein YBR124W
           OS=Saccharomyces cerevisiae GN=YBR124W PE=5 SV=1
          Length = 119

 Score = 31.6 bits (70), Expect = 1.3
 Identities = 21/79 (26%), Positives = 40/79 (50%), Gaps = 3/79 (3%)
 Frame = +1

Query: 43  PNHAYIE--LVSCGMPSQHDYSRKISLEMLNLETMTQNALNGGALPTSSAGPNQSSVRPS 216
           P H +I   ++ C + +    S+   L +L    +  +A+NGGA     +G ++S  R S
Sbjct: 2   PPHIFIAFCILECFVETLSGNSK---LGILGRSNVNSSAINGGAWSALESGIDESVARGS 58

Query: 217 ESGNILLWHL-SLIRAFAV 270
            +G   +W + SL++A  +
Sbjct: 59  STGIFTIWKIFSLLKAIEI 77


>sp|P81922|OR47B_DROME Odorant receptor 47b OS=Drosophila
           melanogaster GN=Or47b PE=2 SV=2
          Length = 412

 Score = 30.0 bits (66), Expect = 3.8
 Identities = 14/47 (29%), Positives = 23/47 (48%)
 Frame = +1

Query: 19  QWHGCM*HPNHAYIELVSCGMPSQHDYSRKISLEMLNLETMTQNALN 159
           QWH    HP   +   +   + SQH+    + ++M+ + T  Q ALN
Sbjct: 191 QWHRLDLHPYTFWFLYIWQSLTSQHNLMSILMVDMVGISTFLQTALN 237


>sp|A3PCW7|G6PI_PROM0 Glucose-6-phosphate isomerase
           OS=Prochlorococcus marinus (strain MIT 9301) GN=pgi PE=3
           SV=1
          Length = 527

 Score = 30.0 bits (66), Expect = 3.8
 Identities = 19/61 (31%), Positives = 31/61 (50%)
 Frame = -2

Query: 276 TPNSKSSDQREVPKKYITRL*RSHRALIWSS*AGRQSTTIQSILRHCFQIQHL*RDFSRV 97
           TP++   D +E PK+Y++   +  R+ + S    RQS TI     +CF +  L   F R 
Sbjct: 375 TPSTNIFDDKENPKEYLSGFLQGTRSALSSE--NRQSITITLEKLNCFSLGALIALFERA 432

Query: 96  I 94
           +
Sbjct: 433 V 433


>sp|Q8CPE9|MUTL_STAES DNA mismatch repair protein mutL
           OS=Staphylococcus epidermidis (strain ATCC 12228)
           GN=mutL PE=3 SV=1
          Length = 645

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 21/90 (23%), Positives = 37/90 (41%), Gaps = 16/90 (17%)
 Frame = -1

Query: 292 VRTKYYTQQQKL*SKRGA---KEVYYQTLKVSQSSDLVQLSWSAKHHHSE---------- 152
           +R    +  +KL S  G+    EV  +   +  + DLV +S     +H E          
Sbjct: 184 IRISLVSDGKKLLSTNGSGRTNEVMAEIYGMKVAKDLVHISGDTSDYHLEGFVAKPEHSR 243

Query: 151 ---HFASLFPNSASLKRFFSSNHAVKAYHS 71
              H+ S+F N   +K F  +   ++ YH+
Sbjct: 244 SNKHYISIFINGRYIKNFVLNKAILEGYHT 273


>sp|Q5HPP4|MUTL_STAEQ DNA mismatch repair protein mutL
           OS=Staphylococcus epidermidis (strain ATCC 35984 /
           RP62A) GN=mutL PE=3 SV=1
          Length = 645

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 21/90 (23%), Positives = 37/90 (41%), Gaps = 16/90 (17%)
 Frame = -1

Query: 292 VRTKYYTQQQKL*SKRGA---KEVYYQTLKVSQSSDLVQLSWSAKHHHSE---------- 152
           +R    +  +KL S  G+    EV  +   +  + DLV +S     +H E          
Sbjct: 184 IRISLVSDGKKLLSTNGSGRTNEVMAEIYGMKVAKDLVHISGDTSDYHLEGFVAKPEHSR 243

Query: 151 ---HFASLFPNSASLKRFFSSNHAVKAYHS 71
              H+ S+F N   +K F  +   ++ YH+
Sbjct: 244 SNKHYISIFINGRYIKNFVLNKAILEGYHT 273


>sp|O13024|INCEA_XENLA Inner centromere protein A OS=Xenopus laevis
           GN=incenp-A PE=1 SV=1
          Length = 873

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 3/52 (5%)
 Frame = -2

Query: 294 LSEQSTTPNSKSSDQREVPKKYITRL*RSHRALI---WSS*AGRQSTTIQSI 148
           LS QS TP    SD+R V +  + R   S RA +   +S  + R+S T +++
Sbjct: 245 LSNQSATPTGSKSDRRSVRRSLVVRKSSSRRASLASQFSLASKRESMTREAV 296


>sp|Q5YYX8|MURC_NOCFA UDP-N-acetylmuramate--L-alanine ligase
           OS=Nocardia farcinica GN=murC PE=3 SV=1
          Length = 501

 Score = 28.9 bits (63), Expect = 8.4
 Identities = 20/62 (32%), Positives = 29/62 (46%), Gaps = 6/62 (9%)
 Frame = -2

Query: 303 T*YLSEQSTTPNSKSSDQREVP----KKYITRL*RSHRALIWSS*AGRQSTTIQSI--LR 142
           T Y +   T P    + +R++P       +  L R HR L+ S   G+ STT   I  L+
Sbjct: 87  TTYAAIPKTNPELVEAQRRDIPVLLRPAVLASLMRGHRTLLVSGTHGKTSTTSMLIVALQ 146

Query: 141 HC 136
           HC
Sbjct: 147 HC 148


>sp|P32334|MSB2_YEAST Protein MSB2 OS=Saccharomyces cerevisiae
           GN=MSB2 PE=1 SV=1
          Length = 1306

 Score = 28.9 bits (63), Expect = 8.4
 Identities = 19/51 (37%), Positives = 27/51 (52%)
 Frame = -1

Query: 211 VSQSSDLVQLSWSAKHHHSEHFASLFPNSASLKRFFSSNHAVKAYHSSQAQ 59
           VSQ SD    S S++   S+  +SL P + S +RF  S H   +  SS +Q
Sbjct: 799 VSQVSDTPVPSTSSRSSVSQTSSSLQPTTTSSQRFTISTHGALSESSSVSQ 849


>sp|Q58652|Y1255_METJA Uncharacterized glycosyltransferase MJ1255
           OS=Methanocaldococcus jannaschii GN=MJ1255 PE=3 SV=2
          Length = 394

 Score = 28.9 bits (63), Expect = 8.4
 Identities = 13/23 (56%), Positives = 18/23 (78%), Gaps = 2/23 (8%)
 Frame = -3

Query: 281 VLHPTAKAL--IKERCQRSILPD 219
           +++PT KAL  I ERC+R I+PD
Sbjct: 135 IVYPTMKALNIINERCERFIVPD 157
tr_hit_id A7QLN5
Definition tr|A7QLN5|A7QLN5_VITVI Chromosome chr13 scaffold_120, whole genome shotgun sequence OS=Vitis vinifera
Align length 66
Score (bit) 42.0
E-value 0.015
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP911707|Adiantum capillus-veneris mRNA, clone:
YMU001_000008_C02.
         (307 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A7QLN5|A7QLN5_VITVI Chromosome chr13 scaffold_120, whole geno...    42   0.015
tr|A7QJX2|A7QJX2_VITVI Chromosome undetermined scaffold_108, who...    42   0.020
tr|A7QLP3|A7QLP3_VITVI Chromosome chr13 scaffold_120, whole geno...    41   0.034
tr|A7R5E1|A7R5E1_VITVI Chromosome undetermined scaffold_947, who...    40   0.059
tr|A5B3A8|A5B3A8_VITVI Putative uncharacterized protein OS=Vitis...    40   0.059
tr|A7R4K2|A7R4K2_VITVI Chromosome undetermined scaffold_719, who...    40   0.077
tr|A7QLN8|A7QLN8_VITVI Chromosome chr13 scaffold_120, whole geno...    39   0.10 
tr|Q9LMQ6|Q9LMQ6_ARATH F7H2.12 protein OS=Arabidopsis thaliana G...    39   0.13 
tr|A7R766|A7R766_VITVI Chromosome undetermined scaffold_1581, wh...    39   0.13 
tr|Q8H6Q7|Q8H6Q7_PONTR CTV.22 OS=Poncirus trifoliata GN=CTV.22 P...    38   0.22 
tr|A7R1K6|A7R1K6_VITVI Chromosome undetermined scaffold_360, who...    38   0.22 
tr|B7FN97|B7FN97_MEDTR Putative uncharacterized protein OS=Medic...    37   0.65 
tr|A7R1K9|A7R1K9_VITVI Chromosome undetermined scaffold_362, who...    37   0.65 
tr|A7R1L3|A7R1L3_VITVI Chromosome undetermined scaffold_362, who...    36   1.1  
tr|Q8H6Q8|Q8H6Q8_PONTR CTV.20 OS=Poncirus trifoliata GN=CTV.20 P...    35   1.9  
tr|Q0J4F1|Q0J4F1_ORYSJ Os08g0523600 protein (Fragment) OS=Oryza ...    35   1.9  
tr|A3BVU9|A3BVU9_ORYSJ Putative uncharacterized protein OS=Oryza...    35   1.9  
tr|A9PFY8|A9PFY8_POPTR Putative uncharacterized protein OS=Popul...    35   2.5  
tr|Q7EZK6|Q7EZK6_ORYSJ Os08g0564800 protein OS=Oryza sativa subs...    34   3.2  
tr|A7R6C6|A7R6C6_VITVI Chromosome undetermined scaffold_1228, wh...    34   3.2  
tr|A5C7D4|A5C7D4_VITVI Putative uncharacterized protein (Fragmen...    34   3.2  
tr|A7R2C3|A7R2C3_VITVI Chromosome undetermined scaffold_418, who...    34   4.2  
tr|Q1MYE5|Q1MYE5_9GAMM Protein-disulfide reductase OS=Oceanobact...    33   9.4  

>tr|A7QLN5|A7QLN5_VITVI Chromosome chr13 scaffold_120, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00001698001
           PE=4 SV=1
          Length = 212

 Score = 42.0 bits (97), Expect = 0.015
 Identities = 26/66 (39%), Positives = 39/66 (59%)
 Frame = +1

Query: 61  ELVSCGMPSQHDYSRKISLEMLNLETMTQNALNGGALPTSSAGPNQSSVRPSESGNILLW 240
           E +     SQ DY RKISL+ML +ET +Q A+    LP++SAG   +S  P + GN +  
Sbjct: 64  EKIYTAATSQSDYLRKISLKMLTMETKSQTAMPSN-LPSNSAG---NSKNPPDPGNRMEK 119

Query: 241 HLSLIR 258
             +L++
Sbjct: 120 QFALMK 125


>tr|A7QJX2|A7QJX2_VITVI Chromosome undetermined scaffold_108, whole
           genome shotgun sequence OS=Vitis vinifera
           GN=GSVIVT00000831001 PE=4 SV=1
          Length = 93

 Score = 41.6 bits (96), Expect = 0.020
 Identities = 23/46 (50%), Positives = 31/46 (67%)
 Frame = +1

Query: 85  SQHDYSRKISLEMLNLETMTQNALNGGALPTSSAGPNQSSVRPSES 222
           SQ DY RKISL+ML +ET + NA    +LP++SAG N+ S    +S
Sbjct: 39  SQSDYFRKISLKMLTMETKSFNAAT-NSLPSNSAGHNKKSPNDKKS 83


>tr|A7QLP3|A7QLP3_VITVI Chromosome chr13 scaffold_120, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00001710001
           PE=4 SV=1
          Length = 115

 Score = 40.8 bits (94), Expect = 0.034
 Identities = 22/46 (47%), Positives = 30/46 (65%)
 Frame = +1

Query: 85  SQHDYSRKISLEMLNLETMTQNALNGGALPTSSAGPNQSSVRPSES 222
           SQ DY RK+SL+ML +ET   NA    A+P++S GPN+ S    +S
Sbjct: 58  SQSDYLRKLSLKMLTMETKFCNA----AMPSNSTGPNKKSSNGKKS 99


>tr|A7R5E1|A7R5E1_VITVI Chromosome undetermined scaffold_947, whole
           genome shotgun sequence OS=Vitis vinifera
           GN=GSVIVT00005169001 PE=4 SV=1
          Length = 87

 Score = 40.0 bits (92), Expect = 0.059
 Identities = 22/49 (44%), Positives = 31/49 (63%)
 Frame = +1

Query: 61  ELVSCGMPSQHDYSRKISLEMLNLETMTQNALNGGALPTSSAGPNQSSV 207
           E +     SQ DY RKISL+ML +ET + N     +LP++SAG N+ S+
Sbjct: 31  EKIYSAATSQSDYLRKISLKMLTMETKSFNVAT-NSLPSNSAGHNKKSL 78


>tr|A5B3A8|A5B3A8_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_000338 PE=4 SV=1
          Length = 351

 Score = 40.0 bits (92), Expect = 0.059
 Identities = 22/46 (47%), Positives = 31/46 (67%)
 Frame = +1

Query: 85  SQHDYSRKISLEMLNLETMTQNALNGGALPTSSAGPNQSSVRPSES 222
           SQ DY RKISL+ML +ET + NA    +LP++SA  N+ S+   +S
Sbjct: 189 SQSDYLRKISLKMLTMETKSFNATT-NSLPSNSADHNKKSLNDKKS 233


>tr|A7R4K2|A7R4K2_VITVI Chromosome undetermined scaffold_719, whole
           genome shotgun sequence OS=Vitis vinifera
           GN=GSVIVT00004512001 PE=4 SV=1
          Length = 93

 Score = 39.7 bits (91), Expect = 0.077
 Identities = 22/54 (40%), Positives = 33/54 (61%)
 Frame = +1

Query: 61  ELVSCGMPSQHDYSRKISLEMLNLETMTQNALNGGALPTSSAGPNQSSVRPSES 222
           E +     SQ DY RKISL+ML +ET + NA    +LP++S G ++ S+   +S
Sbjct: 31  EKIYSATTSQSDYLRKISLKMLTMETKSFNAAT-NSLPSNSTGHSKKSLNDKKS 83


>tr|A7QLN8|A7QLN8_VITVI Chromosome chr13 scaffold_120, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00001703001
           PE=4 SV=1
          Length = 143

 Score = 39.3 bits (90), Expect = 0.10
 Identities = 22/48 (45%), Positives = 31/48 (64%)
 Frame = +1

Query: 61  ELVSCGMPSQHDYSRKISLEMLNLETMTQNALNGGALPTSSAGPNQSS 204
           E +     SQ DY RKISL+ML +ET + NA    +LP++SAG ++ S
Sbjct: 87  EKIYSAATSQSDYLRKISLKMLTMETKSFNAAT-NSLPSNSAGHSKKS 133


>tr|Q9LMQ6|Q9LMQ6_ARATH F7H2.12 protein OS=Arabidopsis thaliana
           GN=F7H2.12 PE=4 SV=1
          Length = 1366

 Score = 38.9 bits (89), Expect = 0.13
 Identities = 22/53 (41%), Positives = 34/53 (64%), Gaps = 1/53 (1%)
 Frame = +1

Query: 94  DYSRKISLEMLNLETMTQNAL-NGGALPTSSAGPNQSSVRPSESGNILLWHLS 249
           DY RKIS++ML +ET +QNA  +  A+P ++ G +  S+ P+  G +L   LS
Sbjct: 108 DYLRKISMKMLTMETKSQNAAGSSAAIPAANNGTSIDSI-PTNQGQLLPGSLS 159


>tr|A7R766|A7R766_VITVI Chromosome undetermined scaffold_1581, whole
           genome shotgun sequence OS=Vitis vinifera
           GN=GSVIVT00009829001 PE=4 SV=1
          Length = 117

 Score = 38.9 bits (89), Expect = 0.13
 Identities = 25/60 (41%), Positives = 35/60 (58%), Gaps = 10/60 (16%)
 Frame = +1

Query: 85  SQHDYSRKISLEMLNLETMTQNALNGGALPTSSAGPNQSS----------VRPSESGNIL 234
           SQ DY RKISL+ML +ET + N     +LP++SAG ++ +           RPS+ GN L
Sbjct: 39  SQSDYLRKISLKMLTMETKSFNVAT-NSLPSNSAGHSKKNPLMTRNPLLGKRPSDPGNNL 97


>tr|Q8H6Q7|Q8H6Q7_PONTR CTV.22 OS=Poncirus trifoliata GN=CTV.22 PE=4
           SV=1
          Length = 1405

 Score = 38.1 bits (87), Expect = 0.22
 Identities = 23/57 (40%), Positives = 37/57 (64%)
 Frame = +1

Query: 61  ELVSCGMPSQHDYSRKISLEMLNLETMTQNALNGGALPTSSAGPNQSSVRPSESGNI 231
           E +     SQ DY RKISL+ML++E+ +QNA+   +L +++ G   SS RP + G++
Sbjct: 81  EKIYTAASSQSDYLRKISLKMLSMESKSQNAM-PNSLQSNNPG---SSNRPPDPGSM 133