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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP911714
Clone id YMU001_000008_C10
Library
Length 529
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000008_C10.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
AGGTACTCTAAAATAACATGCTACAATGCATAAAACGATAAATCGGCATACCCTATATCG
TCGCACACACACATGATCGAGATATAGGCACATATAAAGAGAAGGAGCACAAGAGAGAGT
AGGAGAAATCGTGCAAGTGCACCTCCTAGAGCGGAGTGCTACACCAATCCGCAAGAGAGG
AGGGAAGAGAGGAGAGAAGAAAGACACAAGCATTGGGTGCAATCTCCCCCCGTGCAAGAG
TGACCATTTCCCTCTTGCACGTGTTTACTTTATAGATTTCTCAAATGGTCAAAGTGAGCA
CACATTGGCTAGCCGGTCATAAATAGCCATAGCTCGTAATGAGCACTTGAGTGATAAATA
TACATATCCCTTATCCATAACATACTCCAGGGTTGAAAAAGTAATTGCCCTAAGTTGCGA
GGTACATGAGTGGTGGAGTCAAGTGCAAGATACAAGGCGCTAGGTACATGCCTGCATAGC
ACAATGAGTAACTGAAAACTAAAAGAGTAGCGATGATTAGTAGGAAGCA
■■Homology search results ■■ -
sp_hit_id Q7V299
Definition sp|Q7V299|GLGB_PROMP 1,4-alpha-glucan-branching enzyme OS=Prochlorococcus marinus subsp. pastoris (strain CCMP1378 / MED4)
Align length 48
Score (bit) 33.9
E-value 0.49
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP911714|Adiantum capillus-veneris mRNA, clone:
YMU001_000008_C10.
         (529 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q7V299|GLGB_PROMP 1,4-alpha-glucan-branching enzyme OS=Prochl...    34   0.49 
sp|A2BVP7|GLGB_PROM5 1,4-alpha-glucan-branching enzyme OS=Prochl...    34   0.49 
sp|A5GSG4|GLGB_SYNR3 1,4-alpha-glucan-branching enzyme OS=Synech...    33   1.1  
sp|Q3AYE2|GLGB_SYNS9 1,4-alpha-glucan-branching enzyme OS=Synech...    32   1.4  
sp|A5GJR7|GLGB_SYNPW 1,4-alpha-glucan-branching enzyme OS=Synech...    32   1.4  
sp|A2BQ65|GLGB_PROMS 1,4-alpha-glucan-branching enzyme OS=Prochl...    32   1.4  
sp|Q7V8B5|GLGB_PROMM 1,4-alpha-glucan-branching enzyme OS=Prochl...    32   1.4  
sp|Q7VBL4|GLGB_PROMA 1,4-alpha-glucan-branching enzyme OS=Prochl...    32   1.4  
sp|Q31BV0|GLGB_PROM9 1,4-alpha-glucan-branching enzyme OS=Prochl...    32   1.4  
sp|A2CAR9|GLGB_PROM3 1,4-alpha-glucan-branching enzyme OS=Prochl...    32   1.4  
sp|A8G3V0|GLGB_PROM2 1,4-alpha-glucan-branching enzyme OS=Prochl...    32   1.4  
sp|A3PBV8|GLGB_PROM0 1,4-alpha-glucan-branching enzyme OS=Prochl...    32   1.4  
sp|Q7U646|GLGB_SYNPX 1,4-alpha-glucan-branching enzyme OS=Synech...    32   1.9  
sp|Q3AKV6|GLGB_SYNSC 1,4-alpha-glucan-branching enzyme OS=Synech...    31   4.1  
sp|Q46LW6|GLGB_PROMT 1,4-alpha-glucan-branching enzyme OS=Prochl...    30   5.4  
sp|Q0I8Y2|GLGB_SYNS3 1,4-alpha-glucan-branching enzyme OS=Synech...    30   9.2  
sp|A2C142|GLGB_PROM1 1,4-alpha-glucan-branching enzyme OS=Prochl...    30   9.2  

>sp|Q7V299|GLGB_PROMP 1,4-alpha-glucan-branching enzyme
           OS=Prochlorococcus marinus subsp. pastoris (strain
           CCMP1378 / MED4) GN=glgB PE=3 SV=1
          Length = 754

 Score = 33.9 bits (76), Expect = 0.49
 Identities = 21/48 (43%), Positives = 27/48 (56%), Gaps = 5/48 (10%)
 Frame = -3

Query: 482 VLCRHVPSALYLALDSTT----HVPRNLGQLLFQ-PWSMLWIRDMYIY 354
           VL +H P AL +A +STT      P N+G L F   W+M W+ DM  Y
Sbjct: 471 VLFQHFPGALSIAEESTTWPMVTEPTNVGGLGFNLKWNMGWMHDMLDY 518


>sp|A2BVP7|GLGB_PROM5 1,4-alpha-glucan-branching enzyme
           OS=Prochlorococcus marinus (strain MIT 9515) GN=glgB
           PE=3 SV=1
          Length = 754

 Score = 33.9 bits (76), Expect = 0.49
 Identities = 21/48 (43%), Positives = 27/48 (56%), Gaps = 5/48 (10%)
 Frame = -3

Query: 482 VLCRHVPSALYLALDSTT----HVPRNLGQLLFQ-PWSMLWIRDMYIY 354
           VL +H P AL +A +STT      P N+G L F   W+M W+ DM  Y
Sbjct: 471 VLFQHFPGALSIAEESTTWPMVTEPTNVGGLGFNLKWNMGWMHDMLDY 518


>sp|A5GSG4|GLGB_SYNR3 1,4-alpha-glucan-branching enzyme
           OS=Synechococcus sp. (strain RCC307) GN=glgB PE=3 SV=1
          Length = 772

 Score = 32.7 bits (73), Expect = 1.1
 Identities = 20/54 (37%), Positives = 29/54 (53%), Gaps = 5/54 (9%)
 Frame = -3

Query: 482 VLCRHVPSALYLALDSTTH----VPRNLGQLLFQ-PWSMLWIRDMYIYHSSAHY 336
           VL  + P AL +A +STT     +P ++G L F   W+M W+ DM  Y    H+
Sbjct: 471 VLFHYFPGALSIAEESTTWPLVTMPTSMGGLGFNLKWNMGWMHDMLDYFELDHW 524


>sp|Q3AYE2|GLGB_SYNS9 1,4-alpha-glucan-branching enzyme
           OS=Synechococcus sp. (strain CC9902) GN=glgB PE=3 SV=1
          Length = 764

 Score = 32.3 bits (72), Expect = 1.4
 Identities = 20/48 (41%), Positives = 27/48 (56%), Gaps = 5/48 (10%)
 Frame = -3

Query: 482 VLCRHVPSALYLALDSTT----HVPRNLGQLLFQ-PWSMLWIRDMYIY 354
           VL +H P AL +A +STT      P ++G L F   W+M W+ DM  Y
Sbjct: 471 VLFQHYPGALSIAEESTTWPMVTQPTDMGGLGFNLKWNMGWMHDMLDY 518


>sp|A5GJR7|GLGB_SYNPW 1,4-alpha-glucan-branching enzyme
           OS=Synechococcus sp. (strain WH7803) GN=glgB PE=3 SV=1
          Length = 761

 Score = 32.3 bits (72), Expect = 1.4
 Identities = 20/48 (41%), Positives = 27/48 (56%), Gaps = 5/48 (10%)
 Frame = -3

Query: 482 VLCRHVPSALYLALDSTT----HVPRNLGQLLFQ-PWSMLWIRDMYIY 354
           VL +H P AL +A +STT      P ++G L F   W+M W+ DM  Y
Sbjct: 471 VLFQHFPGALSIAEESTTWPMVTQPTDIGGLGFNLKWNMGWMHDMLDY 518


>sp|A2BQ65|GLGB_PROMS 1,4-alpha-glucan-branching enzyme
           OS=Prochlorococcus marinus (strain AS9601) GN=glgB PE=3
           SV=1
          Length = 754

 Score = 32.3 bits (72), Expect = 1.4
 Identities = 20/48 (41%), Positives = 27/48 (56%), Gaps = 5/48 (10%)
 Frame = -3

Query: 482 VLCRHVPSALYLALDSTT----HVPRNLGQLLFQ-PWSMLWIRDMYIY 354
           VL +H P AL +A +STT      P ++G L F   W+M W+ DM  Y
Sbjct: 471 VLFQHFPGALSIAEESTTWPMVTKPTDMGGLGFNLKWNMGWMHDMLDY 518


>sp|Q7V8B5|GLGB_PROMM 1,4-alpha-glucan-branching enzyme
           OS=Prochlorococcus marinus (strain MIT 9313) GN=glgB
           PE=3 SV=1
          Length = 756

 Score = 32.3 bits (72), Expect = 1.4
 Identities = 20/48 (41%), Positives = 27/48 (56%), Gaps = 5/48 (10%)
 Frame = -3

Query: 482 VLCRHVPSALYLALDSTT----HVPRNLGQLLFQ-PWSMLWIRDMYIY 354
           VL +H P AL +A +STT      P ++G L F   W+M W+ DM  Y
Sbjct: 471 VLFQHFPGALSIAEESTTWPMVTQPTDIGGLGFNLKWNMGWMHDMLDY 518


>sp|Q7VBL4|GLGB_PROMA 1,4-alpha-glucan-branching enzyme
           OS=Prochlorococcus marinus GN=glgB PE=3 SV=1
          Length = 755

 Score = 32.3 bits (72), Expect = 1.4
 Identities = 20/48 (41%), Positives = 27/48 (56%), Gaps = 5/48 (10%)
 Frame = -3

Query: 482 VLCRHVPSALYLALDSTT----HVPRNLGQLLFQ-PWSMLWIRDMYIY 354
           VL +H P AL +A +STT      P ++G L F   W+M W+ DM  Y
Sbjct: 471 VLFQHFPGALSIAEESTTWSGVTKPTDMGGLGFNLKWNMGWMHDMLDY 518


>sp|Q31BV0|GLGB_PROM9 1,4-alpha-glucan-branching enzyme
           OS=Prochlorococcus marinus (strain MIT 9312) GN=glgB
           PE=3 SV=1
          Length = 754

 Score = 32.3 bits (72), Expect = 1.4
 Identities = 20/48 (41%), Positives = 27/48 (56%), Gaps = 5/48 (10%)
 Frame = -3

Query: 482 VLCRHVPSALYLALDSTT----HVPRNLGQLLFQ-PWSMLWIRDMYIY 354
           VL +H P AL +A +STT      P ++G L F   W+M W+ DM  Y
Sbjct: 471 VLFQHFPGALSIAEESTTWPMVTKPTDMGGLGFNLKWNMGWMHDMLDY 518


>sp|A2CAR9|GLGB_PROM3 1,4-alpha-glucan-branching enzyme
           OS=Prochlorococcus marinus (strain MIT 9303) GN=glgB
           PE=3 SV=1
          Length = 756

 Score = 32.3 bits (72), Expect = 1.4
 Identities = 20/48 (41%), Positives = 27/48 (56%), Gaps = 5/48 (10%)
 Frame = -3

Query: 482 VLCRHVPSALYLALDSTT----HVPRNLGQLLFQ-PWSMLWIRDMYIY 354
           VL +H P AL +A +STT      P ++G L F   W+M W+ DM  Y
Sbjct: 471 VLFQHFPGALSIAEESTTWPMVTQPTDMGGLGFNLKWNMGWMHDMLDY 518
tr_hit_id B5IL26
Definition tr|B5IL26|B5IL26_9CHRO 1,4-alpha-glucan branching enzyme OS=Cyanobium sp. PCC 7001
Align length 48
Score (bit) 34.3
E-value 4.0
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP911714|Adiantum capillus-veneris mRNA, clone:
YMU001_000008_C10.
         (529 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B5IL26|B5IL26_9CHRO 1,4-alpha-glucan branching enzyme OS=Cyan...    34   4.0  
tr|Q5B105|Q5B105_EMENI Putative uncharacterized protein OS=Emeri...    34   4.0  

>tr|B5IL26|B5IL26_9CHRO 1,4-alpha-glucan branching enzyme
           OS=Cyanobium sp. PCC 7001 GN=glgB PE=4 SV=1
          Length = 770

 Score = 34.3 bits (77), Expect = 4.0
 Identities = 21/48 (43%), Positives = 27/48 (56%), Gaps = 5/48 (10%)
 Frame = -3

Query: 482 VLCRHVPSALYLALDSTT----HVPRNLGQLLFQ-PWSMLWIRDMYIY 354
           VL +H P AL +A +STT      P N+G L F   W+M W+ DM  Y
Sbjct: 471 VLFQHFPGALSIAEESTTWPMVTQPTNIGGLGFNLKWNMGWMHDMLDY 518


>tr|Q5B105|Q5B105_EMENI Putative uncharacterized protein
           OS=Emericella nidulans GN=AN5775.2 PE=4 SV=1
          Length = 381

 Score = 34.3 bits (77), Expect = 4.0
 Identities = 22/62 (35%), Positives = 29/62 (46%), Gaps = 4/62 (6%)
 Frame = -2

Query: 234 HGGRLHPMLVSFFSPL--FPPLLRIGV-ALRSRRCTCT-ISPTLSCAPSLYMCLYLDHVC 67
           HGG    +  +F  P   FPP  R G    RSR+  C  + P  +CA   ++C Y   VC
Sbjct: 31  HGGSATAVRATFIQPRLRFPPRSRTGCWTCRSRKIKCDEVHPQCNCARLGHVCDYQPRVC 90

Query: 66  VR 61
            R
Sbjct: 91  FR 92