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NBDC - LSDB Archive
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BP911728
Clone id YMU001_000008_E02
Library
Length 247
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000008_E02.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
GGAGGCAGCTGCAATAAATACGTGCCATACACATTCCTGTCGGTAGATGGTTCCTTTTCA
AGGATGGCTTTATGCTCTGCACAAAGAGCATCCCCGAATGGCTCGAAACAGCTTAGCAGA
AGACCCGGACAAAAGTGCACATTGGGAGCAAGATTCTTCTTGCACATGCGCAATATCATG
TTCTTGTACTCTAATGTAGCCTTCCAAGAGGCCTCCATCTCCATCTTTCTTTGCCTTGTC
CTCATTT
■■Homology search results ■■ -
sp_hit_id Q93Y94
Definition sp|Q93Y94|RPOT1_NICSY DNA-directed RNA polymerase 1, mitochondrial OS=Nicotiana sylvestris
Align length 81
Score (bit) 59.3
E-value 6.0e-09
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP911728|Adiantum capillus-veneris mRNA, clone:
YMU001_000008_E02.
         (247 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q93Y94|RPOT1_NICSY DNA-directed RNA polymerase 1, mitochondri...    59   6e-09
sp|Q8L6J5|RPO1B_TOBAC DNA-directed RNA polymerase 1B, mitochondr...    59   6e-09
sp|Q8L6J3|RPO2B_TOBAC DNA-directed RNA polymerase 2B, chloroplas...    55   1e-07
sp|Q8VWF8|RPOT2_NICSY DNA-directed RNA polymerase 2, chloroplast...    54   3e-07
sp|Q9LFV6|RPOT2_ARATH DNA-directed RNA polymerase 2, chloroplast...    49   6e-06
sp|O24600|RPOT3_ARATH DNA-directed RNA polymerase 3, chloroplast...    48   1e-05
sp|P69242|RPOT3_NICSY DNA-directed RNA polymerase 3, chloroplast...    46   7e-05
sp|Q8L6J1|RPO3B_TOBAC DNA-directed RNA polymerase 3B, chloroplas...    46   7e-05
sp|P69243|RPO3A_TOBAC DNA-directed RNA polymerase 3A, chloroplas...    46   7e-05
sp|P92969|RPOT1_ARATH DNA-directed RNA polymerase 1, mitochondri...    42   0.001
sp|Q9Y2K9|STB5L_HUMAN Syntaxin-binding protein 5-like OS=Homo sa...    30   2.9  
sp|Q5DQR4|STB5L_MOUSE Syntaxin-binding protein 5-like OS=Mus mus...    30   3.7  

>sp|Q93Y94|RPOT1_NICSY DNA-directed RNA polymerase 1, mitochondrial
           OS=Nicotiana sylvestris GN=RPOT1 PE=2 SV=1
          Length = 1002

 Score = 59.3 bits (142), Expect = 6e-09
 Identities = 31/81 (38%), Positives = 46/81 (56%)
 Frame = -3

Query: 245 MRTRQRKMEMEASWKATLEYKNMILRMCKKNLAPNVHFCPGLLLSCFEPFGDALCAEHKA 66
           +R RQ K+E EA  +A  EY+ +++ MC++ LAPN+ +   L L  FEP  DA+ AE K 
Sbjct: 169 LRRRQIKVETEAWEEAAKEYQELLMDMCEQKLAPNLPYMKSLFLGWFEPLRDAIAAEQKL 228

Query: 65  ILEKEPSTDRNVYGTYLLQLP 3
               +   +R  Y  +  QLP
Sbjct: 229 C---DEGKNRGAYAPFFDQLP 246


>sp|Q8L6J5|RPO1B_TOBAC DNA-directed RNA polymerase 1B, mitochondrial
           OS=Nicotiana tabacum GN=RPOT1-TOM PE=2 SV=2
          Length = 1002

 Score = 59.3 bits (142), Expect = 6e-09
 Identities = 31/81 (38%), Positives = 46/81 (56%)
 Frame = -3

Query: 245 MRTRQRKMEMEASWKATLEYKNMILRMCKKNLAPNVHFCPGLLLSCFEPFGDALCAEHKA 66
           +R RQ K+E EA  +A  EY+ +++ MC++ LAPN+ +   L L  FEP  DA+ AE K 
Sbjct: 169 LRRRQIKVETEAWEEAAKEYQELLMDMCEQKLAPNLPYMKSLFLGWFEPLRDAIAAEQKL 228

Query: 65  ILEKEPSTDRNVYGTYLLQLP 3
               +   +R  Y  +  QLP
Sbjct: 229 C---DEGKNRGAYAPFFDQLP 246


>sp|Q8L6J3|RPO2B_TOBAC DNA-directed RNA polymerase 2B,
           chloroplastic/mitochondrial OS=Nicotiana tabacum
           GN=RPOT2-TOM PE=2 SV=2
          Length = 1021

 Score = 55.1 bits (131), Expect = 1e-07
 Identities = 29/81 (35%), Positives = 43/81 (53%)
 Frame = -3

Query: 245 MRTRQRKMEMEASWKATLEYKNMILRMCKKNLAPNVHFCPGLLLSCFEPFGDALCAEHKA 66
           ++ RQ K+E EA  +A  EYK ++  MC++ LAPN+ +   L L  FEP  D +  E + 
Sbjct: 186 LKRRQVKVETEAWEQAAKEYKELLFDMCEQKLAPNLPYVKSLFLGWFEPLRDKIAEEQEL 245

Query: 65  ILEKEPSTDRNVYGTYLLQLP 3
             +      +  Y  YL QLP
Sbjct: 246 CSQ---GKSKAAYAKYLYQLP 263


>sp|Q8VWF8|RPOT2_NICSY DNA-directed RNA polymerase 2,
           chloroplastic/mitochondrial OS=Nicotiana sylvestris
           GN=RPOT2 PE=2 SV=2
          Length = 1020

 Score = 53.5 bits (127), Expect = 3e-07
 Identities = 28/81 (34%), Positives = 42/81 (51%)
 Frame = -3

Query: 245 MRTRQRKMEMEASWKATLEYKNMILRMCKKNLAPNVHFCPGLLLSCFEPFGDALCAEHKA 66
           ++ RQ K+E EA  +A  EYK ++  MC++ LAPN+ +   L L  FEP  D +  E + 
Sbjct: 185 LKRRQVKVETEAWEQAAKEYKELLFDMCEQKLAPNLPYVKSLFLGWFEPLRDKIAEEQEL 244

Query: 65  ILEKEPSTDRNVYGTYLLQLP 3
             +      +  Y  Y  QLP
Sbjct: 245 CSQ---GKSKAAYAKYFYQLP 262


>sp|Q9LFV6|RPOT2_ARATH DNA-directed RNA polymerase 2,
           chloroplastic/mitochondrial OS=Arabidopsis thaliana
           GN=RPOT2 PE=2 SV=1
          Length = 1011

 Score = 49.3 bits (116), Expect = 6e-06
 Identities = 30/79 (37%), Positives = 42/79 (53%), Gaps = 1/79 (1%)
 Frame = -3

Query: 236 RQRKMEMEASWKATLEYKNMILRMCKKNLAPNVHFCPGLLLSCFEPFGDALCAEHKAI-L 60
           RQ K+E E   +A  EY  ++  MC++ LAPN+ +   L L  FEP  DA+  + +   L
Sbjct: 180 RQVKIETEEWERAAAEYMELLTDMCEQKLAPNLPYVKSLFLGWFEPLRDAIAKDQELYRL 239

Query: 59  EKEPSTDRNVYGTYLLQLP 3
            K  +T    Y  YL QLP
Sbjct: 240 GKSKAT----YAHYLDQLP 254


>sp|O24600|RPOT3_ARATH DNA-directed RNA polymerase 3, chloroplastic
           OS=Arabidopsis thaliana GN=RPOT3 PE=2 SV=1
          Length = 993

 Score = 48.1 bits (113), Expect = 1e-05
 Identities = 30/82 (36%), Positives = 44/82 (53%), Gaps = 1/82 (1%)
 Frame = -3

Query: 245 MRTRQRKMEMEASWKATLEYKNMILRMCKKNLAPNVHFCPGLLLSCFEPFGDALCAEHKA 66
           +R RQ K E EA  +   EY+++   MC+KNLAPN+ +   + L  F+P  D +  E K 
Sbjct: 162 LRRRQVKEETEAWERMVDEYRDLEKEMCEKNLAPNLPYVKHMFLGWFQPLKDVIEREQK- 220

Query: 65  ILEKEPSTD-RNVYGTYLLQLP 3
            L+K  S   R  Y  ++  LP
Sbjct: 221 -LQKNKSKKVRAAYAPHIELLP 241


>sp|P69242|RPOT3_NICSY DNA-directed RNA polymerase 3, chloroplastic
           OS=Nicotiana sylvestris GN=RPOT3 PE=2 SV=1
          Length = 977

 Score = 45.8 bits (107), Expect = 7e-05
 Identities = 25/60 (41%), Positives = 33/60 (55%)
 Frame = -3

Query: 245 MRTRQRKMEMEASWKATLEYKNMILRMCKKNLAPNVHFCPGLLLSCFEPFGDALCAEHKA 66
           +R RQ K E EA  +   EY+ +   MC+K LAPN+ +   LLL  FEP   A+  E  A
Sbjct: 143 LRRRQIKAETEAWEQMVEEYRELEREMCEKKLAPNLPYVKKLLLGWFEPLRQAIEKEQNA 202


>sp|Q8L6J1|RPO3B_TOBAC DNA-directed RNA polymerase 3B, chloroplastic
           OS=Nicotiana tabacum GN=RPOT3-TOM PE=2 SV=2
          Length = 977

 Score = 45.8 bits (107), Expect = 7e-05
 Identities = 25/60 (41%), Positives = 33/60 (55%)
 Frame = -3

Query: 245 MRTRQRKMEMEASWKATLEYKNMILRMCKKNLAPNVHFCPGLLLSCFEPFGDALCAEHKA 66
           +R RQ K E EA  +   EY+ +   MC+K LAPN+ +   LLL  FEP   A+  E  A
Sbjct: 142 LRRRQIKAETEAWEQMVEEYRELEREMCEKKLAPNLPYVKKLLLGWFEPLRQAIEKEQNA 201


>sp|P69243|RPO3A_TOBAC DNA-directed RNA polymerase 3A, chloroplastic
           OS=Nicotiana tabacum GN=RPOT3-SYL PE=3 SV=1
          Length = 977

 Score = 45.8 bits (107), Expect = 7e-05
 Identities = 25/60 (41%), Positives = 33/60 (55%)
 Frame = -3

Query: 245 MRTRQRKMEMEASWKATLEYKNMILRMCKKNLAPNVHFCPGLLLSCFEPFGDALCAEHKA 66
           +R RQ K E EA  +   EY+ +   MC+K LAPN+ +   LLL  FEP   A+  E  A
Sbjct: 143 LRRRQIKAETEAWEQMVEEYRELEREMCEKKLAPNLPYVKKLLLGWFEPLRQAIEKEQNA 202


>sp|P92969|RPOT1_ARATH DNA-directed RNA polymerase 1, mitochondrial
           OS=Arabidopsis thaliana GN=RPOT1 PE=2 SV=1
          Length = 976

 Score = 41.6 bits (96), Expect = 0.001
 Identities = 20/54 (37%), Positives = 32/54 (59%)
 Frame = -3

Query: 245 MRTRQRKMEMEASWKATLEYKNMILRMCKKNLAPNVHFCPGLLLSCFEPFGDAL 84
           ++ RQ KME E   +A  E + ++  MC++ LAPN+ +   L L  FEP  +A+
Sbjct: 135 LKQRQVKMETEEWERAARECREILADMCEQKLAPNLPYMKSLFLGWFEPVRNAI 188
tr_hit_id Q8SBD3
Definition tr|Q8SBD3|Q8SBD3_PHYPA DNA-directed RNA polymerase OS=Physcomitrella patens
Align length 81
Score (bit) 72.4
E-value 1.0e-11
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP911728|Adiantum capillus-veneris mRNA, clone:
YMU001_000008_E02.
         (247 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q8SBD3|Q8SBD3_PHYPA DNA-directed RNA polymerase OS=Physcomitr...    72   1e-11
tr|Q8L6F8|Q8L6F8_PHYPA DNA-directed RNA polymerase OS=Physcomitr...    72   1e-11
tr|A9TJW1|A9TJW1_PHYPA DNA-directed RNA polymerase OS=Physcomitr...    72   1e-11
tr|Q8SBD4|Q8SBD4_PHYPA DNA-directed RNA polymerase OS=Physcomitr...    72   2e-11
tr|Q8L6F9|Q8L6F9_PHYPA DNA-directed RNA polymerase OS=Physcomitr...    72   2e-11
tr|A9TL52|A9TL52_PHYPA DNA-directed RNA polymerase OS=Physcomitr...    72   2e-11
tr|B2RFX8|B2RFX8_9TRAC RNA polymerase OS=Selaginella moellendorf...    69   9e-11
tr|Q52GZ4|Q52GZ4_SPIOL DNA-directed RNA polymerase OS=Spinacia o...    62   1e-08
tr|A9TJ21|A9TJ21_PHYPA DNA-directed RNA polymerase OS=Physcomitr...    60   4e-08
tr|A7PNA5|A7PNA5_VITVI DNA-directed RNA polymerase OS=Vitis vini...    54   3e-06
tr|A7PAG7|A7PAG7_VITVI DNA-directed RNA polymerase OS=Vitis vini...    54   4e-06
tr|P93661|P93661_CHEAL DNA-directed RNA polymerase OS=Chenopodiu...    53   7e-06
tr|Q9MQV1|Q9MQV1_WHEAT DNA-directed RNA polymerase OS=Triticum a...    53   9e-06
tr|Q1KUU5|Q1KUU5_9ROSI Putative uncharacterized protein OS=Cleom...    52   2e-05
tr|Q84LK6|Q84LK6_ORYSJ DNA-directed RNA polymerase OS=Oryza sati...    50   4e-05
tr|Q70BU3|Q70BU3_HORVU DNA-directed RNA polymerase (Fragment) OS...    50   4e-05
tr|Q6K326|Q6K326_ORYSJ DNA-directed RNA polymerase OS=Oryza sati...    50   4e-05
tr|A3BWE4|A3BWE4_ORYSJ DNA-directed RNA polymerase OS=Oryza sati...    50   4e-05
tr|A2YYV2|A2YYV2_ORYSI DNA-directed RNA polymerase OS=Oryza sati...    50   4e-05
tr|Q9XF15|Q9XF15_MAIZE DNA-directed RNA polymerase OS=Zea mays G...    50   6e-05
tr|Q70XR1|Q70XR1_HORVD DNA-directed RNA polymerase OS=Hordeum vu...    50   6e-05
tr|Q70XR0|Q70XR0_HORVD DNA-directed RNA polymerase OS=Hordeum vu...    50   6e-05
tr|B4YPU8|B4YPU8_BRAOA Putative uncharacterized protein OS=Brass...    49   2e-04
tr|Q6LAJ6|Q6LAJ6_ARATH DNA-directed RNA polymerase (Fragment) OS...    48   2e-04
tr|Q3EBU8|Q3EBU8_ARATH DNA-directed RNA polymerase OS=Arabidopsi...    48   2e-04
tr|Q0WWN0|Q0WWN0_ARATH DNA-directed RNA polymerase (Fragment) OS...    48   2e-04
tr|Q0WN04|Q0WN04_ARATH DNA-directed RNA polymerase OS=Arabidopsi...    48   2e-04
tr|Q84LK5|Q84LK5_ORYSJ DNA-directed RNA polymerase OS=Oryza sati...    48   3e-04
tr|A7PFM9|A7PFM9_VITVI DNA-directed RNA polymerase OS=Vitis vini...    48   3e-04
tr|A3BE54|A3BE54_ORYSJ DNA-directed RNA polymerase OS=Oryza sati...    48   3e-04

>tr|Q8SBD3|Q8SBD3_PHYPA DNA-directed RNA polymerase
           OS=Physcomitrella patens GN=rpoT2 PE=2 SV=1
          Length = 1065

 Score = 72.4 bits (176), Expect = 1e-11
 Identities = 35/81 (43%), Positives = 50/81 (61%)
 Frame = -3

Query: 245 MRTRQRKMEMEASWKATLEYKNMILRMCKKNLAPNVHFCPGLLLSCFEPFGDALCAEHKA 66
           +  RQ K+E EA  +A  EY+ ++  MC+K+LAPN+ F   LLLS FEP  D +  E +A
Sbjct: 213 LHKRQVKIETEAWQQAATEYRELMTEMCRKSLAPNLPFAQSLLLSWFEPLRDGILEEQRA 272

Query: 65  ILEKEPSTDRNVYGTYLLQLP 3
              +E    R++YG Y+ QLP
Sbjct: 273 YGNREHREHRSMYGPYMCQLP 293


>tr|Q8L6F8|Q8L6F8_PHYPA DNA-directed RNA polymerase
           OS=Physcomitrella patens GN=rpoT2 PE=3 SV=1
          Length = 1065

 Score = 72.4 bits (176), Expect = 1e-11
 Identities = 35/81 (43%), Positives = 50/81 (61%)
 Frame = -3

Query: 245 MRTRQRKMEMEASWKATLEYKNMILRMCKKNLAPNVHFCPGLLLSCFEPFGDALCAEHKA 66
           +  RQ K+E EA  +A  EY+ ++  MC+K+LAPN+ F   LLLS FEP  D +  E +A
Sbjct: 213 LHKRQVKIETEAWQQAATEYRELMTEMCRKSLAPNLPFAQSLLLSWFEPLRDGILEEQRA 272

Query: 65  ILEKEPSTDRNVYGTYLLQLP 3
              +E    R++YG Y+ QLP
Sbjct: 273 YGNREHREHRSMYGPYMCQLP 293


>tr|A9TJW1|A9TJW1_PHYPA DNA-directed RNA polymerase
           OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_223008 PE=3 SV=1
          Length = 1065

 Score = 72.4 bits (176), Expect = 1e-11
 Identities = 35/81 (43%), Positives = 50/81 (61%)
 Frame = -3

Query: 245 MRTRQRKMEMEASWKATLEYKNMILRMCKKNLAPNVHFCPGLLLSCFEPFGDALCAEHKA 66
           +  RQ K+E EA  +A  EY+ ++  MC+K+LAPN+ F   LLLS FEP  D +  E +A
Sbjct: 213 LHKRQVKIETEAWQQAATEYRELMTEMCRKSLAPNLPFAQSLLLSWFEPLRDGILEEQRA 272

Query: 65  ILEKEPSTDRNVYGTYLLQLP 3
              +E    R++YG Y+ QLP
Sbjct: 273 YGNREHREHRSMYGPYMCQLP 293


>tr|Q8SBD4|Q8SBD4_PHYPA DNA-directed RNA polymerase
           OS=Physcomitrella patens GN=rpoT1 PE=2 SV=1
          Length = 1087

 Score = 71.6 bits (174), Expect = 2e-11
 Identities = 37/81 (45%), Positives = 48/81 (59%)
 Frame = -3

Query: 245 MRTRQRKMEMEASWKATLEYKNMILRMCKKNLAPNVHFCPGLLLSCFEPFGDALCAEHKA 66
           +R RQ K+E EA  +A  EYK ++  MCKKNLAPN+     LLL  FEP  DA+  E K 
Sbjct: 229 LRMRQFKIETEAWHQAAAEYKELVAEMCKKNLAPNLPATRSLLLGWFEPLRDAIAQEQKD 288

Query: 65  ILEKEPSTDRNVYGTYLLQLP 3
             E+     R +YG +L +LP
Sbjct: 289 YEERNFREHRAIYGPFLAKLP 309


>tr|Q8L6F9|Q8L6F9_PHYPA DNA-directed RNA polymerase
           OS=Physcomitrella patens GN=rpoT1 PE=3 SV=1
          Length = 1087

 Score = 71.6 bits (174), Expect = 2e-11
 Identities = 37/81 (45%), Positives = 48/81 (59%)
 Frame = -3

Query: 245 MRTRQRKMEMEASWKATLEYKNMILRMCKKNLAPNVHFCPGLLLSCFEPFGDALCAEHKA 66
           +R RQ K+E EA  +A  EYK ++  MCKKNLAPN+     LLL  FEP  DA+  E K 
Sbjct: 229 LRMRQFKIETEAWHQAAAEYKELVAEMCKKNLAPNLPATRSLLLGWFEPLRDAIAQEQKD 288

Query: 65  ILEKEPSTDRNVYGTYLLQLP 3
             E+     R +YG +L +LP
Sbjct: 289 YEERNFREHRAIYGPFLAKLP 309


>tr|A9TL52|A9TL52_PHYPA DNA-directed RNA polymerase
           OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_196123 PE=3 SV=1
          Length = 1088

 Score = 71.6 bits (174), Expect = 2e-11
 Identities = 37/81 (45%), Positives = 48/81 (59%)
 Frame = -3

Query: 245 MRTRQRKMEMEASWKATLEYKNMILRMCKKNLAPNVHFCPGLLLSCFEPFGDALCAEHKA 66
           +R RQ K+E EA  +A  EYK ++  MCKKNLAPN+     LLL  FEP  DA+  E K 
Sbjct: 229 LRMRQFKIETEAWHQAAAEYKELVAEMCKKNLAPNLPATRSLLLGWFEPLRDAIAQEQKD 288

Query: 65  ILEKEPSTDRNVYGTYLLQLP 3
             E+     R +YG +L +LP
Sbjct: 289 YEERNFREHRAIYGPFLAKLP 309


>tr|B2RFX8|B2RFX8_9TRAC RNA polymerase OS=Selaginella moellendorffii
           GN=rpoT PE=4 SV=1
          Length = 1002

 Score = 69.3 bits (168), Expect = 9e-11
 Identities = 33/74 (44%), Positives = 49/74 (66%)
 Frame = -3

Query: 236 RQRKMEMEASWKATLEYKNMILRMCKKNLAPNVHFCPGLLLSCFEPFGDALCAEHKAILE 57
           RQ+K+E++A   A  EY+ +++ MC+K LAPN+ F   L++S FEP  D +  E KAI +
Sbjct: 175 RQQKLELDAWDAAVREYRKILVEMCRKKLAPNLPFAKSLMVSWFEPVRDEIAKELKAIEK 234

Query: 56  KEPSTDRNVYGTYL 15
           +EP  DR+ YG  L
Sbjct: 235 EEPGEDRSHYGPLL 248


>tr|Q52GZ4|Q52GZ4_SPIOL DNA-directed RNA polymerase OS=Spinacia
           oleracea GN=rpoT2 PE=2 SV=1
          Length = 1036

 Score = 62.0 bits (149), Expect = 1e-08
 Identities = 33/81 (40%), Positives = 46/81 (56%)
 Frame = -3

Query: 245 MRTRQRKMEMEASWKATLEYKNMILRMCKKNLAPNVHFCPGLLLSCFEPFGDALCAEHKA 66
           +R RQ K+E E+  +A  EYK ++  MCK  LAPN+ +   L L  FEPF D++  + + 
Sbjct: 199 LRNRQIKLETESWQQAANEYKELLADMCKLKLAPNLPYVKSLFLGWFEPFRDSIIEDQEL 258

Query: 65  ILEKEPSTDRNVYGTYLLQLP 3
           I +      R  YGTY  QLP
Sbjct: 259 IRQ---GKCRGAYGTYFDQLP 276


>tr|A9TJ21|A9TJ21_PHYPA DNA-directed RNA polymerase
           OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_222742 PE=3 SV=1
          Length = 861

 Score = 60.5 bits (145), Expect = 4e-08
 Identities = 34/81 (41%), Positives = 44/81 (54%)
 Frame = -3

Query: 245 MRTRQRKMEMEASWKATLEYKNMILRMCKKNLAPNVHFCPGLLLSCFEPFGDALCAEHKA 66
           +R RQ   E EA   A  +Y+  I  MC+K LAPN+     LLL  +EP  DA+  E +A
Sbjct: 13  LRQRQIINETEAWTNAEAQYEEFIAEMCRKKLAPNLPASQLLLLGWYEPLRDAIAEEQRA 72

Query: 65  ILEKEPSTDRNVYGTYLLQLP 3
             E E   +R  YG +L QLP
Sbjct: 73  FSELEFRGERASYGPFLCQLP 93


>tr|A7PNA5|A7PNA5_VITVI DNA-directed RNA polymerase OS=Vitis
           vinifera GN=GSVIVT00021161001 PE=3 SV=1
          Length = 978

 Score = 54.3 bits (129), Expect = 3e-06
 Identities = 30/81 (37%), Positives = 42/81 (51%)
 Frame = -3

Query: 245 MRTRQRKMEMEASWKATLEYKNMILRMCKKNLAPNVHFCPGLLLSCFEPFGDALCAEHKA 66
           +R RQ KME EA  +A  EY+ ++  MC++ LAPN+ +   L L  FEP  D + AE   
Sbjct: 143 LRRRQIKMETEAWEEAAKEYRELLSDMCEQKLAPNLPYIKSLFLGWFEPLRDVIAAEQDL 202

Query: 65  ILEKEPSTDRNVYGTYLLQLP 3
               +   +R  Y  Y   LP
Sbjct: 203 C---KQGKNRAAYAPYFDHLP 220