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NBDC - LSDB Archive
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BP911731
Clone id YMU001_000008_E05
Library
Length 222
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000008_E05.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
ATGAGCATGGCACTTCTGTAACATCATCTGAAAACAAATAAACGTGCACACCTAATACAG
GATTCCCTTGAGAGACAACAGATCCCTCCACTTTGTAACCAGGCACAAGGAAAAGTTCTC
CTATGTCAACATTTCCGAACCCCAGCTCAACATCTGCCTCACCCTTCACCTGCACCTTAA
GCATAGGGTGGACTGTCTGCAGCTGATACATGCCAGGAATGA
■■Homology search results ■■ -
sp_hit_id P69849
Definition sp|P69849|NOMO3_HUMAN Nodal modulator 3 OS=Homo sapiens
Align length 69
Score (bit) 43.5
E-value 0.0003
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP911731|Adiantum capillus-veneris mRNA, clone:
YMU001_000008_E05.
         (222 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P69849|NOMO3_HUMAN Nodal modulator 3 OS=Homo sapiens GN=NOMO3...    44   3e-04
sp|Q5JPE7|NOMO2_HUMAN Nodal modulator 2 OS=Homo sapiens GN=NOMO2...    44   3e-04
sp|Q15155|NOMO1_HUMAN Nodal modulator 1 OS=Homo sapiens GN=NOMO1...    44   3e-04
sp|A7MSG2|MLTF_VIBHB Membrane-bound lytic murein transglycosylas...    30   3.7  
sp|Q9HXM6|GUAA_PSEAE GMP synthase [glutamine-hydrolyzing] OS=Pse...    30   3.7  
sp|Q9Z1N6|SFRP4_MOUSE Secreted frizzled-related sequence protein...    30   4.8  
sp|Q7YRN1|SFRP4_MACMU Secreted frizzled-related protein 4 OS=Mac...    30   4.8  
sp|Q6FHJ7|SFRP4_HUMAN Secreted frizzled-related protein 4 OS=Hom...    30   4.8  
sp|Q80T03|MUC6_MOUSE Mucin-6 OS=Mus musculus GN=Muc6 PE=2 SV=1         29   6.3  
sp|Q62635|MUC2_RAT Mucin-2 (Fragment) OS=Rattus norvegicus GN=Mu...    29   6.3  
sp|Q09624|YS89_CAEEL Uncharacterized protein ZK945.9 OS=Caenorha...    29   8.2  

>sp|P69849|NOMO3_HUMAN Nodal modulator 3 OS=Homo sapiens GN=NOMO3
           PE=2 SV=1
          Length = 1222

 Score = 43.5 bits (101), Expect = 3e-04
 Identities = 24/69 (34%), Positives = 35/69 (50%)
 Frame = -3

Query: 220 IPGMYQLQTVHPMLKVQVKGEADVELGFGNVDIGELFLVPGYKVEGSVVSQGNPVLGVHV 41
           +PG Y++   HP   ++ +    V +   N +     +V GY V GSV S G P+ GV  
Sbjct: 177 LPGDYEILATHPTWALK-EASTTVRVTNSNANAASPLIVAGYNVSGSVRSDGEPMKGVKF 235

Query: 40  YLFSDDVTE 14
            LFS  VT+
Sbjct: 236 LLFSSLVTK 244


>sp|Q5JPE7|NOMO2_HUMAN Nodal modulator 2 OS=Homo sapiens GN=NOMO2
           PE=1 SV=1
          Length = 1267

 Score = 43.5 bits (101), Expect = 3e-04
 Identities = 24/69 (34%), Positives = 35/69 (50%)
 Frame = -3

Query: 220 IPGMYQLQTVHPMLKVQVKGEADVELGFGNVDIGELFLVPGYKVEGSVVSQGNPVLGVHV 41
           +PG Y++   HP   ++ +    V +   N +     +V GY V GSV S G P+ GV  
Sbjct: 177 LPGDYEILATHPTWALK-EASTTVRVTNSNANAASPLIVAGYNVSGSVRSDGEPMKGVKF 235

Query: 40  YLFSDDVTE 14
            LFS  VT+
Sbjct: 236 LLFSSLVTK 244


>sp|Q15155|NOMO1_HUMAN Nodal modulator 1 OS=Homo sapiens GN=NOMO1
           PE=1 SV=4
          Length = 1222

 Score = 43.5 bits (101), Expect = 3e-04
 Identities = 24/69 (34%), Positives = 35/69 (50%)
 Frame = -3

Query: 220 IPGMYQLQTVHPMLKVQVKGEADVELGFGNVDIGELFLVPGYKVEGSVVSQGNPVLGVHV 41
           +PG Y++   HP   ++ +    V +   N +     +V GY V GSV S G P+ GV  
Sbjct: 177 LPGDYEILATHPTWALK-EASTTVRVTNSNANAASPLIVAGYNVSGSVRSDGEPMKGVKF 235

Query: 40  YLFSDDVTE 14
            LFS  VT+
Sbjct: 236 LLFSSLVTK 244


>sp|A7MSG2|MLTF_VIBHB Membrane-bound lytic murein transglycosylase F
           OS=Vibrio harveyi (strain ATCC BAA-1116 / BB120) GN=mltF
           PE=3 SV=1
          Length = 534

 Score = 30.0 bits (66), Expect = 3.7
 Identities = 20/65 (30%), Positives = 30/65 (46%)
 Frame = -3

Query: 220 IPGMYQLQTVHPMLKVQVKGEADVELGFGNVDIGELFLVPGYKVEGSVVSQGNPVLGVHV 41
           +P +  LQ  HP L+ ++ G+AD      +V  GEL       VE S+  +  P L +  
Sbjct: 178 VPTLTALQKEHPELQFEIIGDADTRDLLKHVSTGELRFTVTDSVELSLAQRLYPDLALAF 237

Query: 40  YLFSD 26
            L  D
Sbjct: 238 ELTED 242


>sp|Q9HXM6|GUAA_PSEAE GMP synthase [glutamine-hydrolyzing]
           OS=Pseudomonas aeruginosa GN=guaA PE=3 SV=1
          Length = 525

 Score = 30.0 bits (66), Expect = 3.7
 Identities = 24/69 (34%), Positives = 38/69 (55%), Gaps = 2/69 (2%)
 Frame = -3

Query: 208 YQLQTVHPMLKVQVKGEADVELGFGNVD-IGELFLVPGYKVEGSVVSQGNPVLGVHVYL- 35
           Y +QT+   +  +V+G    E G+  VD +G+  L+ G  +E  V   G  VLG+ V++ 
Sbjct: 87  YGMQTMAEQMGGKVQGSDLREFGYARVDVVGKARLLDG--IEDHVDDDG--VLGLDVWMS 142

Query: 34  FSDDVTEVP 8
             D VTE+P
Sbjct: 143 HGDKVTEMP 151


>sp|Q9Z1N6|SFRP4_MOUSE Secreted frizzled-related sequence protein 4
           OS=Mus musculus GN=Sfrp4 PE=2 SV=1
          Length = 351

 Score = 29.6 bits (65), Expect = 4.8
 Identities = 15/28 (53%), Positives = 17/28 (60%)
 Frame = -1

Query: 144 WGSEMLT*ENFSLCLVTKWRDLLSLKGI 61
           W S M+  EN   CLV KWRD LS + I
Sbjct: 261 WRSRMMLLEN---CLVEKWRDQLSRRSI 285


>sp|Q7YRN1|SFRP4_MACMU Secreted frizzled-related protein 4 OS=Macaca
           mulatta GN=SFRP4 PE=2 SV=1
          Length = 346

 Score = 29.6 bits (65), Expect = 4.8
 Identities = 15/28 (53%), Positives = 17/28 (60%)
 Frame = -1

Query: 144 WGSEMLT*ENFSLCLVTKWRDLLSLKGI 61
           W S M+  EN   CLV KWRD LS + I
Sbjct: 261 WRSRMMLLEN---CLVEKWRDQLSKRSI 285


>sp|Q6FHJ7|SFRP4_HUMAN Secreted frizzled-related protein 4 OS=Homo
           sapiens GN=SFRP4 PE=1 SV=2
          Length = 346

 Score = 29.6 bits (65), Expect = 4.8
 Identities = 15/28 (53%), Positives = 17/28 (60%)
 Frame = -1

Query: 144 WGSEMLT*ENFSLCLVTKWRDLLSLKGI 61
           W S M+  EN   CLV KWRD LS + I
Sbjct: 261 WRSRMMLLEN---CLVEKWRDQLSKRSI 285


>sp|Q80T03|MUC6_MOUSE Mucin-6 OS=Mus musculus GN=Muc6 PE=2 SV=1
          Length = 2850

 Score = 29.3 bits (64), Expect = 6.3
 Identities = 18/45 (40%), Positives = 22/45 (48%)
 Frame = +3

Query: 42   TCTPNTGFP*ETTDPSTL*PGTRKSSPMSTFPNPSSTSASPFTCT 176
            T T +   P   T  STL P +R +S +   P PSS S SP   T
Sbjct: 2565 TSTSHLSLPSSMT--STLTPASRSASTLQYTPTPSSVSHSPLLTT 2607


>sp|Q62635|MUC2_RAT Mucin-2 (Fragment) OS=Rattus norvegicus GN=Muc2
            PE=1 SV=1
          Length = 1513

 Score = 29.3 bits (64), Expect = 6.3
 Identities = 25/65 (38%), Positives = 32/65 (49%), Gaps = 8/65 (12%)
 Frame = +3

Query: 12   TSVTSSENK*TCTPNTGFP*ETTDPSTL*PGTRKSSP--MSTFPNPSSTSA------SPF 167
            TS T+S    T +P T     TT P+T  P T  +SP   +T P PS T++      SP 
Sbjct: 1423 TSPTTSHITSTVSPTTSPTTSTTSPTTS-PTTSTTSPTTSTTSPTPSPTTSTTSPTPSPT 1481

Query: 168  TCTLS 182
            T T S
Sbjct: 1482 TSTTS 1486
tr_hit_id A7Q0P8
Definition tr|A7Q0P8|A7Q0P8_VITVI Chromosome chr7 scaffold_42, whole genome shotgun sequence OS=Vitis vinifera
Align length 72
Score (bit) 99.0
E-value 1.0e-19
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP911731|Adiantum capillus-veneris mRNA, clone:
YMU001_000008_E05.
         (222 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A7Q0P8|A7Q0P8_VITVI Chromosome chr7 scaffold_42, whole genome...    99   1e-19
tr|A2ZS73|A2ZS73_ORYSJ Putative uncharacterized protein OS=Oryza...    92   1e-17
tr|A2WNV9|A2WNV9_ORYSI Putative uncharacterized protein OS=Oryza...    92   1e-17
tr|Q9LZQ4|Q9LZQ4_ARATH Putative uncharacterized protein T12C14_6...    92   2e-17
tr|A9TN07|A9TN07_PHYPA Predicted protein OS=Physcomitrella paten...    91   4e-17
tr|Q5RD35|Q5RD35_PONAB Putative uncharacterized protein DKFZp459...    44   0.005
tr|Q4G177|Q4G177_HUMAN NOMO2 protein OS=Homo sapiens GN=NOMO2 PE...    44   0.005
tr|Q8BJM8|Q8BJM8_MOUSE Putative uncharacterized protein OS=Mus m...    41   0.034
tr|Q8BJM1|Q8BJM1_MOUSE Putative uncharacterized protein OS=Mus m...    41   0.034
tr|Q6GQT9|Q6GQT9_MOUSE Nodal modulator 1 OS=Mus musculus GN=Nomo...    41   0.034
tr|B2GUA0|B2GUA0_XENTR LOC100158535 protein OS=Xenopus tropicali...    40   0.077
tr|Q5U235|Q5U235_XENLA LOC495699 protein OS=Xenopus laevis GN=no...    39   0.13 
tr|B0XK54|B0XK54_CULQU Nodal modulator 3 OS=Culex quinquefasciat...    37   0.38 
tr|Q4S7R0|Q4S7R0_TETNG Chromosome 18 SCAF14712, whole genome sho...    37   0.65 
tr|B6P3B6|B6P3B6_BRAFL Putative uncharacterized protein OS=Branc...    36   1.1  
tr|Q7Q6G7|Q7Q6G7_ANOGA AGAP005856-PA OS=Anopheles gambiae GN=AGA...    34   4.2  
tr|Q702W3|Q702W3_HHV1 Glycoprotein I OS=Human herpesvirus 1 GN=U...    33   5.5  
tr|A9UVM4|A9UVM4_MONBE Predicted protein OS=Monosiga brevicollis...    33   7.2  
tr|B8HGN7|B8HGN7_9MICC Peptidase S1 and S6 chymotrypsin/Hap OS=A...    33   9.4  
tr|Q4WYI0|Q4WYI0_ASPFU Extracellular serine-threonine rich prote...    33   9.4  
tr|B0XWJ0|B0XWJ0_ASPFC Extracellular serine-threonine rich prote...    33   9.4  

>tr|A7Q0P8|A7Q0P8_VITVI Chromosome chr7 scaffold_42, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00028133001
           PE=4 SV=1
          Length = 1199

 Score = 99.0 bits (245), Expect = 1e-19
 Identities = 43/72 (59%), Positives = 57/72 (79%)
 Frame = -3

Query: 220 IPGMYQLQTVHPMLKVQVKGEADVELGFGNVDIGELFLVPGYKVEGSVVSQGNPVLGVHV 41
           IPG Y+LQ  HP L V+V+G  +VELGFGN  + ++F VPGY + G VV+QGNP+LGVH+
Sbjct: 180 IPGNYKLQASHPDLTVEVRGSTEVELGFGNGLVDDIFFVPGYDINGFVVAQGNPILGVHI 239

Query: 40  YLFSDDVTEVPC 5
           YL+S+DV+EV C
Sbjct: 240 YLYSNDVSEVDC 251


>tr|A2ZS73|A2ZS73_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_001395 PE=4 SV=1
          Length = 1193

 Score = 92.4 bits (228), Expect = 1e-17
 Identities = 38/72 (52%), Positives = 56/72 (77%)
 Frame = -3

Query: 220 IPGMYQLQTVHPMLKVQVKGEADVELGFGNVDIGELFLVPGYKVEGSVVSQGNPVLGVHV 41
           IPG Y+L+  HP  +++ +G ++V+L FGN    ++F + GY + GSVV+QGNP+LGVH+
Sbjct: 179 IPGRYKLRASHPNYEIETRGSSEVDLRFGNAVADDVFFLSGYNIYGSVVAQGNPILGVHL 238

Query: 40  YLFSDDVTEVPC 5
           YL+S+DVTEVPC
Sbjct: 239 YLYSNDVTEVPC 250


>tr|A2WNV9|A2WNV9_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_01543 PE=4 SV=1
          Length = 1193

 Score = 92.4 bits (228), Expect = 1e-17
 Identities = 38/72 (52%), Positives = 56/72 (77%)
 Frame = -3

Query: 220 IPGMYQLQTVHPMLKVQVKGEADVELGFGNVDIGELFLVPGYKVEGSVVSQGNPVLGVHV 41
           IPG Y+L+  HP  +++ +G ++V+L FGN    ++F + GY + GSVV+QGNP+LGVH+
Sbjct: 179 IPGRYKLRASHPNYEIETRGSSEVDLRFGNAVADDVFFLSGYNIYGSVVAQGNPILGVHL 238

Query: 40  YLFSDDVTEVPC 5
           YL+S+DVTEVPC
Sbjct: 239 YLYSNDVTEVPC 250


>tr|Q9LZQ4|Q9LZQ4_ARATH Putative uncharacterized protein T12C14_60
           OS=Arabidopsis thaliana GN=T12C14_60 PE=4 SV=1
          Length = 1227

 Score = 91.7 bits (226), Expect = 2e-17
 Identities = 40/72 (55%), Positives = 55/72 (76%)
 Frame = -3

Query: 220 IPGMYQLQTVHPMLKVQVKGEADVELGFGNVDIGELFLVPGYKVEGSVVSQGNPVLGVHV 41
           IPG Y ++  HP L+V+V+G  +VELGF N  + ++F V GY ++GSVV+QGNP+LGVH+
Sbjct: 186 IPGTYNIRASHPELQVEVRGSTEVELGFANGMVDDIFFVLGYDLKGSVVAQGNPILGVHI 245

Query: 40  YLFSDDVTEVPC 5
           YL SDDV+ V C
Sbjct: 246 YLHSDDVSMVDC 257


>tr|A9TN07|A9TN07_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_170950 PE=4 SV=1
          Length = 1235

 Score = 90.5 bits (223), Expect = 4e-17
 Identities = 41/72 (56%), Positives = 54/72 (75%)
 Frame = -3

Query: 220 IPGMYQLQTVHPMLKVQVKGEADVELGFGNVDIGELFLVPGYKVEGSVVSQGNPVLGVHV 41
           + G Y+++  HP LKV+ KG   VELG+GN  + ++F V GY +EGSVVSQGNPVLGV V
Sbjct: 250 LTGSYKIEASHPDLKVEAKGSEQVELGWGNGKVADIFFVAGYHLEGSVVSQGNPVLGVQV 309

Query: 40  YLFSDDVTEVPC 5
           YL+SD+V E+ C
Sbjct: 310 YLYSDEVPELFC 321


>tr|Q5RD35|Q5RD35_PONAB Putative uncharacterized protein
           DKFZp459L1733 (Fragment) OS=Pongo abelii
           GN=DKFZp459L1733 PE=2 SV=1
          Length = 1189

 Score = 43.5 bits (101), Expect = 0.005
 Identities = 24/69 (34%), Positives = 35/69 (50%)
 Frame = -3

Query: 220 IPGMYQLQTVHPMLKVQVKGEADVELGFGNVDIGELFLVPGYKVEGSVVSQGNPVLGVHV 41
           +PG Y++   HP   ++ +    V +   N +     +V GY V GSV S G P+ GV  
Sbjct: 144 LPGDYEILATHPTWALK-EASTTVRVTNSNANAASPLIVAGYNVSGSVRSDGEPMKGVKF 202

Query: 40  YLFSDDVTE 14
            LFS  VT+
Sbjct: 203 LLFSSLVTK 211


>tr|Q4G177|Q4G177_HUMAN NOMO2 protein OS=Homo sapiens GN=NOMO2 PE=2
           SV=1
          Length = 1100

 Score = 43.5 bits (101), Expect = 0.005
 Identities = 24/69 (34%), Positives = 35/69 (50%)
 Frame = -3

Query: 220 IPGMYQLQTVHPMLKVQVKGEADVELGFGNVDIGELFLVPGYKVEGSVVSQGNPVLGVHV 41
           +PG Y++   HP   ++ +    V +   N +     +V GY V GSV S G P+ GV  
Sbjct: 10  LPGDYEILATHPTWALK-EASTTVRVTNSNANAASPLIVAGYNVSGSVRSDGEPMKGVKF 68

Query: 40  YLFSDDVTE 14
            LFS  VT+
Sbjct: 69  LLFSSLVTK 77


>tr|Q8BJM8|Q8BJM8_MOUSE Putative uncharacterized protein OS=Mus
           musculus GN=Nomo1 PE=2 SV=1
          Length = 1214

 Score = 40.8 bits (94), Expect = 0.034
 Identities = 23/69 (33%), Positives = 34/69 (49%)
 Frame = -3

Query: 220 IPGMYQLQTVHPMLKVQVKGEADVELGFGNVDIGELFLVPGYKVEGSVVSQGNPVLGVHV 41
           +PG Y++   HP   ++ +    V +   N +     +V GY V GSV S G P+ GV  
Sbjct: 169 LPGDYEILATHPTWALK-EASTTVRVTNSNANAAGPLIVAGYNVSGSVRSDGEPMKGVKF 227

Query: 40  YLFSDDVTE 14
            LFS  V +
Sbjct: 228 LLFSSLVNK 236


>tr|Q8BJM1|Q8BJM1_MOUSE Putative uncharacterized protein OS=Mus
           musculus GN=Nomo1 PE=2 SV=1
          Length = 1144

 Score = 40.8 bits (94), Expect = 0.034
 Identities = 23/69 (33%), Positives = 34/69 (49%)
 Frame = -3

Query: 220 IPGMYQLQTVHPMLKVQVKGEADVELGFGNVDIGELFLVPGYKVEGSVVSQGNPVLGVHV 41
           +PG Y++   HP   ++ +    V +   N +     +V GY V GSV S G P+ GV  
Sbjct: 99  LPGDYEILATHPTWALK-EASTTVRVTNSNANAAGPLIVAGYNVSGSVRSDGEPMKGVKF 157

Query: 40  YLFSDDVTE 14
            LFS  V +
Sbjct: 158 LLFSSLVNK 166


>tr|Q6GQT9|Q6GQT9_MOUSE Nodal modulator 1 OS=Mus musculus GN=Nomo1
           PE=1 SV=1
          Length = 1214

 Score = 40.8 bits (94), Expect = 0.034
 Identities = 23/69 (33%), Positives = 34/69 (49%)
 Frame = -3

Query: 220 IPGMYQLQTVHPMLKVQVKGEADVELGFGNVDIGELFLVPGYKVEGSVVSQGNPVLGVHV 41
           +PG Y++   HP   ++ +    V +   N +     +V GY V GSV S G P+ GV  
Sbjct: 169 LPGDYEILATHPTWALK-EASTTVRVTNSNANAAGPLIVAGYNVSGSVRSDGEPMKGVKF 227

Query: 40  YLFSDDVTE 14
            LFS  V +
Sbjct: 228 LLFSSLVNK 236