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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP911737
Clone id YMU001_000008_F01
Library
Length 106
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000008_F01.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
ATGGTCAGTGCAGCTACAGGTGCACAACGTGCTCTGCATGCGCGCTGGTTCGCTGGGAAA
ATGATCACGGTCTCTTTTCTTACAATTCGAGAGTACGAGCTCAAGT
■■Homology search results ■■ -
sp_hit_id Q5RC80
Definition sp|Q5RC80|RBM39_PONAB RNA-binding protein 39 OS=Pongo abelii
Align length 31
Score (bit) 39.3
E-value 0.006
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP911737|Adiantum capillus-veneris mRNA, clone:
YMU001_000008_F01.
         (106 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q5RC80|RBM39_PONAB RNA-binding protein 39 OS=Pongo abelii GN=...    39   0.006
sp|Q8VH51|RBM39_MOUSE RNA-binding protein 39 OS=Mus musculus GN=...    39   0.006
sp|Q14498|RBM39_HUMAN RNA-binding protein 39 OS=Homo sapiens GN=...    39   0.006
sp|Q9WU40|MAN1_MOUSE Inner nuclear membrane protein Man1 OS=Mus ...    32   1.0  
sp|Q9Y2U8|MAN1_HUMAN Inner nuclear membrane protein Man1 OS=Homo...    32   1.0  

>sp|Q5RC80|RBM39_PONAB RNA-binding protein 39 OS=Pongo abelii
           GN=RBM39 PE=2 SV=1
          Length = 524

 Score = 39.3 bits (90), Expect = 0.006
 Identities = 16/31 (51%), Positives = 22/31 (70%)
 Frame = +1

Query: 4   VSAATGAQRALHARWFAGKMITVSFLTIREY 96
           ++AA  A  ALH RWFAGKMIT +++ +  Y
Sbjct: 475 IAAAIAAVNALHGRWFAGKMITAAYVPLPTY 505


>sp|Q8VH51|RBM39_MOUSE RNA-binding protein 39 OS=Mus musculus
           GN=Rbm39 PE=1 SV=1
          Length = 530

 Score = 39.3 bits (90), Expect = 0.006
 Identities = 16/31 (51%), Positives = 22/31 (70%)
 Frame = +1

Query: 4   VSAATGAQRALHARWFAGKMITVSFLTIREY 96
           ++AA  A  ALH RWFAGKMIT +++ +  Y
Sbjct: 481 IAAAIAAVNALHGRWFAGKMITAAYVPLPTY 511


>sp|Q14498|RBM39_HUMAN RNA-binding protein 39 OS=Homo sapiens
           GN=RBM39 PE=1 SV=2
          Length = 530

 Score = 39.3 bits (90), Expect = 0.006
 Identities = 16/31 (51%), Positives = 22/31 (70%)
 Frame = +1

Query: 4   VSAATGAQRALHARWFAGKMITVSFLTIREY 96
           ++AA  A  ALH RWFAGKMIT +++ +  Y
Sbjct: 481 IAAAIAAVNALHGRWFAGKMITAAYVPLPTY 511


>sp|Q9WU40|MAN1_MOUSE Inner nuclear membrane protein Man1 OS=Mus
           musculus GN=Lemd3 PE=1 SV=2
          Length = 921

 Score = 32.0 bits (71), Expect = 1.0
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = +1

Query: 22  AQRALHARWFAGKMITVSFLTIREY 96
           A +ALH  WF GK++TV +L +  Y
Sbjct: 857 AFKALHGSWFDGKLVTVKYLRLDRY 881


>sp|Q9Y2U8|MAN1_HUMAN Inner nuclear membrane protein Man1 OS=Homo
           sapiens GN=LEMD3 PE=1 SV=2
          Length = 911

 Score = 32.0 bits (71), Expect = 1.0
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = +1

Query: 22  AQRALHARWFAGKMITVSFLTIREY 96
           A +ALH  WF GK++TV +L +  Y
Sbjct: 847 AFKALHGSWFDGKLVTVKYLRLDRY 871
tr_hit_id Q337U3
Definition tr|Q337U3|Q337U3_ORYSJ cDNA clone:001-019-C07, full insert sequence OS=Oryza sativa subsp. japonica
Align length 34
Score (bit) 54.7
E-value 2.0e-06
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP911737|Adiantum capillus-veneris mRNA, clone:
YMU001_000008_F01.
         (106 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q337U3|Q337U3_ORYSJ cDNA clone:001-019-C07, full insert seque...    55   2e-06
tr|Q337U2|Q337U2_ORYSJ cDNA clone:J013102K13, full insert sequen...    55   2e-06
tr|Q0IXG5|Q0IXG5_ORYSJ Os10g0439600 protein (Fragment) OS=Oryza ...    55   2e-06
tr|A3C546|A3C546_ORYSJ Putative uncharacterized protein OS=Oryza...    55   2e-06
tr|A2Z7T0|A2Z7T0_ORYSI Putative uncharacterized protein OS=Oryza...    55   2e-06
tr|Q9ZVW9|Q9ZVW9_ARATH Putative splicing factor (At2g16940) OS=A...    50   4e-05
tr|Q8LPG3|Q8LPG3_ARATH Putative splicing factor OS=Arabidopsis t...    50   4e-05
tr|Q8LE50|Q8LE50_ARATH Putative splicing factor OS=Arabidopsis t...    50   4e-05
tr|Q10RM6|Q10RM6_ORYSJ Transposon protein, putative, CACTA, En/S...    47   5e-04
tr|B8ANW8|B8ANW8_ORYSI Putative uncharacterized protein OS=Oryza...    47   5e-04
tr|B4FWC4|B4FWC4_MAIZE Putative uncharacterized protein OS=Zea m...    47   5e-04
tr|B4FBM8|B4FBM8_MAIZE Putative uncharacterized protein OS=Zea m...    47   5e-04
tr|A7P8E1|A7P8E1_VITVI Chromosome chr3 scaffold_8, whole genome ...    47   5e-04
tr|A3AE82|A3AE82_ORYSJ Putative uncharacterized protein OS=Oryza...    47   5e-04
tr|Q93Y25|Q93Y25_ARATH Splicing factor-like protein OS=Arabidops...    45   0.002
tr|Q84WH4|Q84WH4_ARATH Splicing factor-like protein OS=Arabidops...    45   0.002
tr|Q56XB8|Q56XB8_ARATH Splicing factor-like protein OS=Arabidops...    45   0.002
tr|A9TV48|A9TV48_PHYPA Predicted protein OS=Physcomitrella paten...    45   0.002
tr|B7FLZ8|B7FLZ8_MEDTR Putative uncharacterized protein OS=Medic...    44   0.003
tr|A9TD65|A9TD65_PHYPA Predicted protein OS=Physcomitrella paten...    43   0.007
tr|A7PKX0|A7PKX0_VITVI Chromosome chr7 scaffold_20, whole genome...    42   0.016
tr|A5AQI8|A5AQI8_VITVI Putative uncharacterized protein OS=Vitis...    42   0.016
tr|Q5RJI0|Q5RJI0_MOUSE Putative uncharacterized protein OS=Mus m...    39   0.10 
tr|Q5BJP4|Q5BJP4_RAT RNA binding motif protein 39 (RNA-binding r...    39   0.10 
tr|Q3UZ51|Q3UZ51_MOUSE Putative uncharacterized protein (Fragmen...    39   0.10 
tr|Q3UXT6|Q3UXT6_MOUSE Putative uncharacterized protein (Fragmen...    39   0.10 
tr|Q3U313|Q3U313_MOUSE Putative uncharacterized protein OS=Mus m...    39   0.10 
tr|Q0VGU9|Q0VGU9_MOUSE Rbm39 protein OS=Mus musculus GN=Rbm39 PE...    39   0.10 
tr|Q2HJD8|Q2HJD8_BOVIN RBM39 protein (Fragment) OS=Bos taurus GN...    39   0.10 
tr|B7NZJ5|B7NZJ5_RABIT RNA binding motif protein 39 isoform a (P...    39   0.10 

>tr|Q337U3|Q337U3_ORYSJ cDNA clone:001-019-C07, full insert sequence
           OS=Oryza sativa subsp. japonica GN=LOC_Os10g30370 PE=2
           SV=1
          Length = 339

 Score = 54.7 bits (130), Expect = 2e-06
 Identities = 23/34 (67%), Positives = 30/34 (88%)
 Frame = +1

Query: 4   VSAATGAQRALHARWFAGKMITVSFLTIREYELK 105
           V+AAT AQRALH RWFAGKMIT +F+T ++Y++K
Sbjct: 303 VAAATAAQRALHGRWFAGKMITATFMTAQQYKMK 336


>tr|Q337U2|Q337U2_ORYSJ cDNA clone:J013102K13, full insert sequence
           OS=Oryza sativa subsp. japonica GN=LOC_Os10g30370 PE=2
           SV=1
          Length = 320

 Score = 54.7 bits (130), Expect = 2e-06
 Identities = 23/34 (67%), Positives = 30/34 (88%)
 Frame = +1

Query: 4   VSAATGAQRALHARWFAGKMITVSFLTIREYELK 105
           V+AAT AQRALH RWFAGKMIT +F+T ++Y++K
Sbjct: 284 VAAATAAQRALHGRWFAGKMITATFMTAQQYKMK 317


>tr|Q0IXG5|Q0IXG5_ORYSJ Os10g0439600 protein (Fragment) OS=Oryza
           sativa subsp. japonica GN=Os10g0439600 PE=4 SV=1
          Length = 330

 Score = 54.7 bits (130), Expect = 2e-06
 Identities = 23/34 (67%), Positives = 30/34 (88%)
 Frame = +1

Query: 4   VSAATGAQRALHARWFAGKMITVSFLTIREYELK 105
           V+AAT AQRALH RWFAGKMIT +F+T ++Y++K
Sbjct: 294 VAAATAAQRALHGRWFAGKMITATFMTAQQYKMK 327


>tr|A3C546|A3C546_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_030418 PE=4 SV=1
          Length = 533

 Score = 54.7 bits (130), Expect = 2e-06
 Identities = 23/34 (67%), Positives = 30/34 (88%)
 Frame = +1

Query: 4   VSAATGAQRALHARWFAGKMITVSFLTIREYELK 105
           V+AAT AQRALH RWFAGKMIT +F+T ++Y++K
Sbjct: 497 VAAATAAQRALHGRWFAGKMITATFMTAQQYKMK 530


>tr|A2Z7T0|A2Z7T0_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_33765 PE=4 SV=1
          Length = 549

 Score = 54.7 bits (130), Expect = 2e-06
 Identities = 23/34 (67%), Positives = 30/34 (88%)
 Frame = +1

Query: 4   VSAATGAQRALHARWFAGKMITVSFLTIREYELK 105
           V+AAT AQRALH RWFAGKMIT +F+T ++Y++K
Sbjct: 513 VAAATAAQRALHGRWFAGKMITATFMTAQQYKMK 546


>tr|Q9ZVW9|Q9ZVW9_ARATH Putative splicing factor (At2g16940)
           OS=Arabidopsis thaliana GN=At2g16940 PE=2 SV=2
          Length = 561

 Score = 50.4 bits (119), Expect = 4e-05
 Identities = 22/32 (68%), Positives = 25/32 (78%)
 Frame = +1

Query: 10  AATGAQRALHARWFAGKMITVSFLTIREYELK 105
           AA GAQRALH RWFAGKMIT +++T   YE K
Sbjct: 523 AAIGAQRALHGRWFAGKMITATYMTTEAYEAK 554


>tr|Q8LPG3|Q8LPG3_ARATH Putative splicing factor OS=Arabidopsis
           thaliana GN=At2g16940 PE=2 SV=1
          Length = 420

 Score = 50.4 bits (119), Expect = 4e-05
 Identities = 22/32 (68%), Positives = 25/32 (78%)
 Frame = +1

Query: 10  AATGAQRALHARWFAGKMITVSFLTIREYELK 105
           AA GAQRALH RWFAGKMIT +++T   YE K
Sbjct: 382 AAIGAQRALHGRWFAGKMITATYMTTEAYEAK 413


>tr|Q8LE50|Q8LE50_ARATH Putative splicing factor OS=Arabidopsis
           thaliana PE=2 SV=1
          Length = 560

 Score = 50.4 bits (119), Expect = 4e-05
 Identities = 22/32 (68%), Positives = 25/32 (78%)
 Frame = +1

Query: 10  AATGAQRALHARWFAGKMITVSFLTIREYELK 105
           AA GAQRALH RWFAGKMIT +++T   YE K
Sbjct: 522 AAIGAQRALHGRWFAGKMITATYMTTEAYEAK 553


>tr|Q10RM6|Q10RM6_ORYSJ Transposon protein, putative, CACTA, En/Spm
           sub-class, expressed OS=Oryza sativa subsp. japonica
           GN=LOC_Os03g05830 PE=4 SV=1
          Length = 566

 Score = 47.0 bits (110), Expect = 5e-04
 Identities = 19/34 (55%), Positives = 27/34 (79%)
 Frame = +1

Query: 4   VSAATGAQRALHARWFAGKMITVSFLTIREYELK 105
           ++AA  AQ+ALH RWFAGKMIT +F++ ++Y  K
Sbjct: 530 ITAAMSAQKALHGRWFAGKMITATFMSPQQYSTK 563


>tr|B8ANW8|B8ANW8_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_10059 PE=4 SV=1
          Length = 567

 Score = 47.0 bits (110), Expect = 5e-04
 Identities = 19/34 (55%), Positives = 27/34 (79%)
 Frame = +1

Query: 4   VSAATGAQRALHARWFAGKMITVSFLTIREYELK 105
           ++AA  AQ+ALH RWFAGKMIT +F++ ++Y  K
Sbjct: 531 ITAAMSAQKALHGRWFAGKMITATFMSPQQYSTK 564