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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP911742
Clone id YMU001_000008_F06
Library
Length 474
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000008_F06.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
AATTTCCACACTACTTGCACCGTTTCTGTGCTCATCAATCTCAGGCACCTTGCAGTCAAA
GACTAAATCAGCAAAATTCACATTCAGCTTCCTCTTTGTAAACTTGATTGGTTCCTTTCC
GTAACTGCGATCACTTAGATGGGAAGTCTCCTTGAAGTAGTGTTTATGCCTATTGACTGC
TTATAGTGCAGGGTTTCACCCTTGCAAGCACAAACCCATCCAATCCTGCTGTATGCAAAA
CACCAATCCCTTCACAAAACCAGCATGGTTGATCGTCTTGTGCTTCATTCTTCGTCCATT
TCATGATAGCGTTGTCAGGAAGGCCTGAACCTCTGCATCTGGGACATTTACGATGACTTC
CTCCGGTATGGTCTAGAATAAGAGTGATATTTCTCGCCACATCTTGCAGTACTTCCCACA
TGTTTCTATGTTGATGCTGCAGGTAGCCGATCGTCTCGACGAACGTTTTATCTG
■■Homology search results ■■ -
sp_hit_id Q9PK60
Definition sp|Q9PK60|UVRA_CHLMU UvrABC system protein A OS=Chlamydia muridarum
Align length 64
Score (bit) 31.6
E-value 1.9
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP911742|Adiantum capillus-veneris mRNA, clone:
YMU001_000008_F06.
         (474 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9PK60|UVRA_CHLMU UvrABC system protein A OS=Chlamydia murida...    32   1.9  
sp|Q8C3L1|CC032_MOUSE Uncharacterized protein C3orf32 homolog OS...    30   5.4  
sp|Q18GZ3|DNAJ_HALWD Chaperone protein dnaJ OS=Haloquadratum wal...    30   7.1  
sp|Q04960|DNJH_CUCSA DnaJ protein homolog OS=Cucumis sativus GN=...    29   9.3  

>sp|Q9PK60|UVRA_CHLMU UvrABC system protein A OS=Chlamydia muridarum
           GN=uvrA PE=3 SV=1
          Length = 1787

 Score = 31.6 bits (70), Expect = 1.9
 Identities = 20/64 (31%), Positives = 29/64 (45%), Gaps = 6/64 (9%)
 Frame = -3

Query: 469 KTFVETIGYLQHQHRNMWEVLQDVARNITLILDHT-----GGSHRKCPRCRGSGLPDNA- 308
           K F  T+G     H+    VL ++   I      +     G S+ +CPRC+ +GL D A 
Sbjct: 350 KLFDGTLGKTTQTHKQWKGVLNEIGEKIRFANKPSRYLPKGTSYTECPRCQKTGLSDYAN 409

Query: 307 IMKW 296
             KW
Sbjct: 410 AAKW 413


>sp|Q8C3L1|CC032_MOUSE Uncharacterized protein C3orf32 homolog
           OS=Mus musculus PE=2 SV=1
          Length = 340

 Score = 30.0 bits (66), Expect = 5.4
 Identities = 13/41 (31%), Positives = 19/41 (46%)
 Frame = -3

Query: 364 GGSHRKCPRCRGSGLPDNAIMKWTKNEAQDDQPCWFCEGIG 242
           G    KC  C G+G+   +    TK +A+  + C  C G G
Sbjct: 183 GRGRYKCSGCHGAGMVRCSSCSGTKRKAKQPRRCHLCSGSG 223


>sp|Q18GZ3|DNAJ_HALWD Chaperone protein dnaJ OS=Haloquadratum
           walsbyi (strain DSM 16790) GN=dnaJ PE=3 SV=1
          Length = 387

 Score = 29.6 bits (65), Expect = 7.1
 Identities = 13/41 (31%), Positives = 19/41 (46%)
 Frame = -3

Query: 352 RKCPRCRGSGLPDNAIMKWTKNEAQDDQPCWFCEGIGVLHT 230
           R CP+C G G     + +      Q  Q C  C+G G ++T
Sbjct: 176 RTCPQCNGQG-QTTTVRETALGRVQQTQTCPRCDGSGEMYT 215


>sp|Q04960|DNJH_CUCSA DnaJ protein homolog OS=Cucumis sativus
           GN=DNAJ1 PE=2 SV=1
          Length = 413

 Score = 29.3 bits (64), Expect = 9.3
 Identities = 14/40 (35%), Positives = 19/40 (47%)
 Frame = -3

Query: 361 GSHRKCPRCRGSGLPDNAIMKWTKNEAQDDQPCWFCEGIG 242
           G+  KCP C+GSG+  +          Q   PC  C+G G
Sbjct: 157 GASMKCPGCQGSGMKVSIRHLGPSMIQQMQHPCNECKGTG 196
tr_hit_id A9TXB3
Definition tr|A9TXB3|A9TXB3_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
Align length 90
Score (bit) 59.7
E-value 7.0e-08
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP911742|Adiantum capillus-veneris mRNA, clone:
YMU001_000008_F06.
         (474 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9TXB3|A9TXB3_PHYPA Predicted protein OS=Physcomitrella paten...    60   7e-08
tr|A9ST62|A9ST62_PHYPA Predicted protein OS=Physcomitrella paten...    57   4e-07
tr|A9RVZ4|A9RVZ4_PHYPA Predicted protein OS=Physcomitrella paten...    52   2e-05
tr|A9TXC6|A9TXC6_PHYPA Predicted protein (Fragment) OS=Physcomit...    35   2.4  
tr|B4ET75|B4ET75_PROMH Putative hydrolase OS=Proteus mirabilis (...    34   3.2  
tr|Q88NI2|Q88NI2_PSEPK Membrane protein, putative OS=Pseudomonas...    33   5.4  
tr|A5VZV7|A5VZV7_PSEP1 Cation efflux protein OS=Pseudomonas puti...    33   5.4  
tr|Q30CS1|Q30CS1_STRAU LipPks2 OS=Streptomyces aureofaciens GN=l...    33   7.1  
tr|B0KTI2|B0KTI2_PSEPG Cation efflux protein OS=Pseudomonas puti...    33   9.3  
tr|A3T368|A3T368_9RHOB Putative uncharacterized protein OS=Sulfi...    33   9.3  

>tr|A9TXB3|A9TXB3_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_98525 PE=4 SV=1
          Length = 622

 Score = 59.7 bits (143), Expect = 7e-08
 Identities = 32/90 (35%), Positives = 44/90 (48%), Gaps = 15/90 (16%)
 Frame = -3

Query: 415 EVLQDVARNITLILDHTGGSHRKCPRCRGSGLPDNAIMKWTKNEAQDDQPCWFCEGI--- 245
           E  +  A N+T I   T     KCPRC+GSGL  +    +T+     ++PCWFCEG+   
Sbjct: 181 ESARSFANNVTEIFRKTDCKRSKCPRCKGSGLHMDL---FTEKSPYSNEPCWFCEGLAPT 237

Query: 244 ------------GVLHTAGLDGFVLARVKP 191
                       GV+  AG DG++L R  P
Sbjct: 238 FLHTPAVIFSWMGVMSVAGTDGYMLGRSNP 267


>tr|A9ST62|A9ST62_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_234081 PE=4 SV=1
          Length = 417

 Score = 57.4 bits (137), Expect = 4e-07
 Identities = 27/68 (39%), Positives = 38/68 (55%), Gaps = 1/68 (1%)
 Frame = -3

Query: 400 VARNITLILDHTGGSHRKCPRCRGSGLPDNAIMKWTKNEAQD-DQPCWFCEGIGVLHTAG 224
           +A N         G   KCPRC+GSGL      K + + + + + PCWFCEG+GV+  A 
Sbjct: 11  LAENAAEAFGKADGEPSKCPRCKGSGLHMEPSTKNSHSTSTNSNNPCWFCEGMGVMAVAS 70

Query: 223 LDGFVLAR 200
            DG++L R
Sbjct: 71  TDGYMLGR 78


>tr|A9RVZ4|A9RVZ4_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_161249 PE=4 SV=1
          Length = 326

 Score = 51.6 bits (122), Expect = 2e-05
 Identities = 30/79 (37%), Positives = 45/79 (56%), Gaps = 5/79 (6%)
 Frame = -3

Query: 421 MWEVLQDVA---RNITLILDHTGGSHRKCPRCRGSGLPDNAIMK-WTKNEAQD-DQPCWF 257
           M +V+Q  A   +++  IL    G+  KCPRC+GSGL   A+   W+  +    +  C F
Sbjct: 1   MVDVIQRTALFLQDVREILRKRDGNRAKCPRCKGSGLL--ALQPCWSHGQPNSSNSSCLF 58

Query: 256 CEGIGVLHTAGLDGFVLAR 200
           CEG+GV+   GL G++L R
Sbjct: 59  CEGVGVMPVVGLRGYILGR 77


>tr|A9TXC6|A9TXC6_PHYPA Predicted protein (Fragment) OS=Physcomitrella
            patens subsp. patens GN=PHYPADRAFT_172515 PE=4 SV=1
          Length = 960

 Score = 34.7 bits (78), Expect = 2.4
 Identities = 20/66 (30%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
 Frame = -1

Query: 195  NPAL*AVNR-HKHYFKETSHLSDRSYGKEPIKFTKRKLNVNFADLVFDCKVPEIDEHRNG 19
            +PA  A N  H ++ + +    DR Y  E +     +  V+F     DC + +   HRNG
Sbjct: 807  HPAALASNTSHTNFERASGSYDDRRYSDESVHGAGGQRRVSFPAAKIDCDLRQQHSHRNG 866

Query: 18   ASSVEI 1
             SS E+
Sbjct: 867  YSSAEL 872


>tr|B4ET75|B4ET75_PROMH Putative hydrolase OS=Proteus mirabilis
           (strain HI4320) GN=PMI0806 PE=4 SV=1
          Length = 285

 Score = 34.3 bits (77), Expect = 3.2
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = -3

Query: 322 LPDNAIMKWTKNEAQDDQPCWFCEGIGVLHTAGLDGFVLARV 197
           LPDN  + W ++   D QP  FC G G+     +D  +L ++
Sbjct: 13  LPDNRTLTWYESGPSDGQPVLFCTGAGMSGLLSMDADLLTKL 54


>tr|Q88NI2|Q88NI2_PSEPK Membrane protein, putative OS=Pseudomonas
           putida (strain KT2440) GN=PP1227 PE=4 SV=1
          Length = 319

 Score = 33.5 bits (75), Expect = 5.4
 Identities = 26/97 (26%), Positives = 46/97 (47%), Gaps = 5/97 (5%)
 Frame = +2

Query: 140 WEVSLK*CLCLLTAYSAGFHPCKHKPIQSCCMQNTNPFTKPAWLIVLCFILRPFHDSVVR 319
           W +S      LL A+  G+       +Q   ++  +P+  PA L ++C ++ P   SVVR
Sbjct: 169 WVMSASITAALLIAFCFGY------AVQGTALEWVSPYIDPAVLALVCLVIVPLPMSVVR 222

Query: 320 KA*TSASGTFTMTSSGMV*N-----KSDISRHILQYF 415
           +A    S  F +T   +  +     K+ ++RH LQ +
Sbjct: 223 QA---LSEIFLVTPGDLKLHVDEVAKAFVARHGLQSY 256


>tr|A5VZV7|A5VZV7_PSEP1 Cation efflux protein OS=Pseudomonas putida
           (strain F1 / ATCC 700007) GN=Pput_1256 PE=4 SV=1
          Length = 319

 Score = 33.5 bits (75), Expect = 5.4
 Identities = 26/97 (26%), Positives = 46/97 (47%), Gaps = 5/97 (5%)
 Frame = +2

Query: 140 WEVSLK*CLCLLTAYSAGFHPCKHKPIQSCCMQNTNPFTKPAWLIVLCFILRPFHDSVVR 319
           W +S      LL A+  G+       +Q   ++  +P+  PA L ++C ++ P   SVVR
Sbjct: 169 WVMSASITAALLIAFCFGY------AVQGTALEWVSPYIDPAVLALVCLVIVPLPMSVVR 222

Query: 320 KA*TSASGTFTMTSSGMV*N-----KSDISRHILQYF 415
           +A    S  F +T   +  +     K+ ++RH LQ +
Sbjct: 223 QA---LSEIFLVTPGDLKLHVDEVAKAFVARHGLQSY 256


>tr|Q30CS1|Q30CS1_STRAU LipPks2 OS=Streptomyces aureofaciens
            GN=lipPks2 PE=4 SV=1
          Length = 3582

 Score = 33.1 bits (74), Expect = 7.1
 Identities = 15/35 (42%), Positives = 22/35 (62%)
 Frame = -1

Query: 366  PEEVIVNVPDAEVQAFLTTLS*NGRRMKHKTINHA 262
            PE V+V+  + EV+    TL   GRR+K  T++HA
Sbjct: 2477 PEAVVVSGAETEVEHVAATLGAQGRRVKRLTVSHA 2511


>tr|B0KTI2|B0KTI2_PSEPG Cation efflux protein OS=Pseudomonas putida
           (strain GB-1) GN=PputGB1_4191 PE=4 SV=1
          Length = 319

 Score = 32.7 bits (73), Expect = 9.3
 Identities = 26/97 (26%), Positives = 46/97 (47%), Gaps = 5/97 (5%)
 Frame = +2

Query: 140 WEVSLK*CLCLLTAYSAGFHPCKHKPIQSCCMQNTNPFTKPAWLIVLCFILRPFHDSVVR 319
           W +S      LL A+  G+       +Q   ++  +P+  PA L ++C ++ P   SVVR
Sbjct: 169 WVMSASITAALLIAFCFGY------AVQGTSLEWVSPYIDPAVLALVCLVIVPLPLSVVR 222

Query: 320 KA*TSASGTFTMTSSGMV*N-----KSDISRHILQYF 415
           +A    S  F +T   +  +     K+ ++RH LQ +
Sbjct: 223 QA---LSEIFLVTPGDLKLHVDEVAKAFVARHGLQSY 256


>tr|A3T368|A3T368_9RHOB Putative uncharacterized protein
           OS=Sulfitobacter sp. NAS-14.1 GN=NAS141_02471 PE=4 SV=1
          Length = 66

 Score = 32.7 bits (73), Expect = 9.3
 Identities = 17/46 (36%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
 Frame = -3

Query: 376 LDHTGGSHRKCPRCRGSG-LPDNAIMKWTKNEAQDDQPCWFCEGIG 242
           +  TG + R+CP C GSG +PD       K   +    CW C G G
Sbjct: 1   MKETGTAMRECPVCDGSGMMPDALCEVLHKPALKGTVQCWTCYGEG 46