NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | ダウンロード | 利用許諾 | ヘルプ
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP911743
Clone id YMU001_000008_F09
Library
Length 506
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000008_F09.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
GTCAACAAATTTGTAGCTGGCTTGTCTTTGCTTGGTTGCTTTAGCTTTGTAAAAGAATAA
ACCCCACAATTGAGAAGATCTTTTTTTGTTCATAAACTGTCACAATCAATGGCTTCTAAA
GCCATAGCTTGCATCAAACATCCATGCCATAACTCTACAACAGCTTCACCATCATGTACC
TCCCTCAATTTTTTGTGACTTCATACCATGCACACCGAACACATCCATCCGGGATACTTG
ATACATGACAATGGAGACACTTTTTTGTTGCACCTTATGCCCTTCAAACGACACCACCAC
CTTGTAGGCCGGTTATCTTTTGCTTCTACCGGAGGCTAATACTCTCTCCACCCCAAAGTA
GCACCTCACCCAAGCAAGACAACCACAGTCATCAAGAGGAGACTCAGATGCCCACATCAA
AGACAAATTAGAGCAATCATTGAGTGCCATCGAAAGCAGATGCCATGACACCTCAATCAC
ACAGACCTACATCTTGCATGAGGGAG
■■Homology search results ■■ -
sp_hit_id O18400
Definition sp|O18400|PITX1_DROME Pituitary homeobox 1 homolog OS=Drosophila melanogaster
Align length 75
Score (bit) 31.6
E-value 2.2
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP911743|Adiantum capillus-veneris mRNA, clone:
YMU001_000008_F09.
         (506 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|O18400|PITX1_DROME Pituitary homeobox 1 homolog OS=Drosophila...    32   2.2  
sp|O42478|TLE4_XENLA Transducin-like enhancer protein 4 OS=Xenop...    30   8.4  
sp|Q55FJ0|LVSG_DICDI Probable inactive serine/threonine-protein ...    30   8.4  
sp|Q5XI14|CH045_RAT Uncharacterized protein C8orf45 homolog OS=R...    30   8.4  

>sp|O18400|PITX1_DROME Pituitary homeobox 1 homolog OS=Drosophila
           melanogaster GN=Ptx1 PE=2 SV=2
          Length = 509

 Score = 31.6 bits (70), Expect = 2.2
 Identities = 24/75 (32%), Positives = 32/75 (42%), Gaps = 8/75 (10%)
 Frame = +1

Query: 205 TMHTEHIHPGYLIHDNGDTF-----LLHLMPFKRHHHLVGRLSFASTGG*YSLHPK---V 360
           T  TEH+H  + +HD+  +      +  LMP     HL         GG YS HP    V
Sbjct: 105 TSGTEHLHSHHSLHDSSSSVSISPAISSLMPISSLSHLHHSAGQDLVGG-YSQHPHHTVV 163

Query: 361 APHPSKTTTVIKRRL 405
            PH  K   + K R+
Sbjct: 164 PPHTPKHEPLEKLRI 178


>sp|O42478|TLE4_XENLA Transducin-like enhancer protein 4 OS=Xenopus
           laevis GN=tle4 PE=1 SV=2
          Length = 772

 Score = 29.6 bits (65), Expect = 8.4
 Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
 Frame = +3

Query: 342 LSPPQSSTSPKQDNHSHQEETQMPTSKTN*SNH*VPS-KADAMTPQSH 482
           ++   S+ S K   HSH E++  P SK+N      P+ + DA TP S+
Sbjct: 297 IASSSSTPSSKSKEHSHNEKSTTPVSKSN-----TPTPRTDAPTPGSN 339


>sp|Q55FJ0|LVSG_DICDI Probable inactive serine/threonine-protein
            kinase lvsG OS=Dictyostelium discoideum GN=lvsG PE=3 SV=1
          Length = 2179

 Score = 29.6 bits (65), Expect = 8.4
 Identities = 25/86 (29%), Positives = 36/86 (41%), Gaps = 9/86 (10%)
 Frame = +3

Query: 195  VTSYHAHRTHPSGILDT*QWRHFFVAPYALQTTPPPCRPVIFCFYRRLILSPPQSS---- 362
            V ++H H +H S I +T   R       +  + P             ++LSP  SS    
Sbjct: 843  VNNHHHHHSHNSNIPNTVSSRSDSFGSNSSSSAPGNSNS-------NILLSPSMSSSMGS 895

Query: 363  ----TSPK-QDNHSHQEETQMPTSKT 425
                TSP  Q   SHQ+ +  PTS+T
Sbjct: 896  LNSATSPSSQSQSSHQQTSSTPTSQT 921


>sp|Q5XI14|CH045_RAT Uncharacterized protein C8orf45 homolog
           OS=Rattus norvegicus PE=2 SV=1
          Length = 681

 Score = 29.6 bits (65), Expect = 8.4
 Identities = 14/21 (66%), Positives = 16/21 (76%)
 Frame = +2

Query: 398 GDSDAHIKDKLEQSLSAIESR 460
           GD  +H KDKLEQ  SA+ESR
Sbjct: 411 GDLTSHKKDKLEQLQSALESR 431
tr_hit_id B2WMK6
Definition tr|B2WMK6|B2WMK6_PYRTR Putative uncharacterized protein OS=Pyrenophora tritici-repentis (strain Pt-1C-BFP)
Align length 77
Score (bit) 35.8
E-value 1.2
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP911743|Adiantum capillus-veneris mRNA, clone:
YMU001_000008_F09.
         (506 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B2WMK6|B2WMK6_PYRTR Putative uncharacterized protein OS=Pyren...    36   1.2  
tr|B4I610|B4I610_DROSE GM17382 OS=Drosophila sechellia GN=GM1738...    34   3.5  
tr|B4HD68|B4HD68_DROPE GL22926 OS=Drosophila persimilis GN=GL229...    34   4.6  
tr|A4FMH1|A4FMH1_SACEN Putative uncharacterized protein OS=Sacch...    33   7.8  
tr|A9YU94|A9YU94_HAEPU Caudal (Fragment) OS=Haematopota pluviali...    33   7.8  
tr|Q9UZW7|Q9UZW7_PYRAB Putative uncharacterized protein OS=Pyroc...    33   7.8  

>tr|B2WMK6|B2WMK6_PYRTR Putative uncharacterized protein
           OS=Pyrenophora tritici-repentis (strain Pt-1C-BFP)
           GN=PTRG_11216 PE=4 SV=1
          Length = 463

 Score = 35.8 bits (81), Expect = 1.2
 Identities = 24/77 (31%), Positives = 35/77 (45%), Gaps = 1/77 (1%)
 Frame = +3

Query: 195 VTSYHAHRTHP-SGILDT*QWRHFFVAPYALQTTPPPCRPVIFCFYRRLILSPPQSSTSP 371
           +T+   H +HP + I+D  Q +H + + Y  Q  PPP    +   Y     +PPQ   SP
Sbjct: 280 MTTAPMHASHPHTPIMDHDQQQHMYHSEYMEQIKPPP--NPLESLYPNYFGAPPQFEESP 337

Query: 372 KQDNHSHQEETQMPTSK 422
             D  S  +    P SK
Sbjct: 338 YYDRPSFGQMISKPLSK 354


>tr|B4I610|B4I610_DROSE GM17382 OS=Drosophila sechellia GN=GM17382
           PE=4 SV=1
          Length = 912

 Score = 34.3 bits (77), Expect = 3.5
 Identities = 15/34 (44%), Positives = 22/34 (64%)
 Frame = +2

Query: 380 QPQSSRGDSDAHIKDKLEQSLSAIESRCHDTSIT 481
           +PQ++R D DAH+    EQSLS + +R H  + T
Sbjct: 7   RPQNARHDRDAHVVTAFEQSLSNMTNRLHQLTAT 40


>tr|B4HD68|B4HD68_DROPE GL22926 OS=Drosophila persimilis GN=GL22926
           PE=4 SV=1
          Length = 140

 Score = 33.9 bits (76), Expect = 4.6
 Identities = 26/90 (28%), Positives = 42/90 (46%), Gaps = 9/90 (10%)
 Frame = +3

Query: 141 SMP*LYNS----FTIMYLPQFFVTSYHAHRTHPSGILDT*QWRHFFVAPYAL-QTTPPPC 305
           S+P L+N     F +M++   F  S+  H    SGI D   ++ F  +   L Q  PP  
Sbjct: 50  SLPALFNICLLLFLVMFIFAIFGMSFFMHVKEKSGINDVYNFKTFGQSMILLFQVRPPTT 109

Query: 306 RP----VIFCFYRRLILSPPQSSTSPKQDN 383
            P    V++C  R ++L  P + ++P   N
Sbjct: 110 IPLTVYVVYCCCRWVMLPRPHTESTPISHN 139


>tr|A4FMH1|A4FMH1_SACEN Putative uncharacterized protein
           OS=Saccharopolyspora erythraea (strain NRRL 23338)
           GN=SACE_6073 PE=4 SV=1
          Length = 172

 Score = 33.1 bits (74), Expect = 7.8
 Identities = 24/75 (32%), Positives = 30/75 (40%), Gaps = 1/75 (1%)
 Frame = +3

Query: 270 APYALQTTPPPCRPVIFCFYRRLILSPPQSSTSPKQDNHSHQEETQMPTSKTN*SNH*VP 449
           AP    TTPPP  P            PP SS+         ++ T + TS T+     VP
Sbjct: 59  APSLTWTTPPPMLP------------PPLSSSEAVSSTSGSEDPTSLTTSSTSPDAPGVP 106

Query: 450 SK-ADAMTPQSHRPT 491
           S   D + P   RPT
Sbjct: 107 SSPGDTVPPPPPRPT 121


>tr|A9YU94|A9YU94_HAEPU Caudal (Fragment) OS=Haematopota pluvialis
           GN=cad PE=2 SV=1
          Length = 181

 Score = 33.1 bits (74), Expect = 7.8
 Identities = 21/79 (26%), Positives = 30/79 (37%)
 Frame = +1

Query: 199 LHTMHTEHIHPGYLIHDNGDTFLLHLMPFKRHHHLVGRLSFASTGG*YSLHPKVAPHPSK 378
           LH  H  H HP + +H       + + P   HH      S    G    + P   P PS 
Sbjct: 99  LHLQHHPHHHPHHPLHQMSSMAAMGMPPMSLHH------SVLHHGHMMGVPPPHPPPPSS 152

Query: 379 TTTVIKRRLRCPHQRQIRA 435
           TT  ++ +    HQ  + A
Sbjct: 153 TTHNLQAQAHHHHQAVVSA 171


>tr|Q9UZW7|Q9UZW7_PYRAB Putative uncharacterized protein
           OS=Pyrococcus abyssi GN=PYRAB10290 PE=4 SV=1
          Length = 112

 Score = 33.1 bits (74), Expect = 7.8
 Identities = 19/64 (29%), Positives = 30/64 (46%)
 Frame = -3

Query: 486 VCVIEVSWHLLSMALNDCSNLSLMWASESPLDDCGCLAWVRCYFGVERVLASGRSKR*PA 307
           V  I + + +LS+ LN   N++L +     L   G LAW+ CY  V +    G   +   
Sbjct: 10  VARISIPYAILSLILNYLFNINLSFPYGILLTFPGILAWIYCYLQVSKAYKRGILMKEGC 69

Query: 306 YKVV 295
           Y +V
Sbjct: 70  YSIV 73