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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP911747
Clone id YMU001_000008_G01
Library
Length 480
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000008_G01.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
GCTGCATAGCGAATGAATGCAGCAGGATGAACGAGCTGTGATTGTGGAAATATTGAAGGT
GCATTTGAGCTCTCCAACAAAGCCTTTTGTTAGCTGGAATACAAGAGATGAACGATGGGC
TCTAGAGTAAGAAGGGAACGGCTTCTGCTTCCTTGTGTTCGCAGTGTCAACTCAGTGGTT
TTAGGCATTTGATTGTGCATGTGTCTAGCACACTACAGTGCAAAGGCTTGCTAGAATATT
GGAGGCGAGACTTATCAGCTTGGCTCCGGGGGTGCAGTATAGTATACATGGTGCACTTGT
ACACTATTTTTTCCCAACTAGTTAATGTCTGCTCTGCACCATGTTGTGATATAACAAAGC
TTTCGTGGCACTTGTCATTTAGAACTTTCCATAGGTTTCTATCTGTGGTTTTGCAAGCTA
GGATTGTAGTAGTACACTAACTCAATTGATTATTTATTCTTGACTCTGGTTAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id Q2HJI3
Definition sp|Q2HJI3|F136A_BOVIN Protein FAM136A OS=Bos taurus
Align length 66
Score (bit) 30.4
E-value 4.3
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP911747|Adiantum capillus-veneris mRNA, clone:
YMU001_000008_G01.
         (480 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q2HJI3|F136A_BOVIN Protein FAM136A OS=Bos taurus GN=FAM136A P...    30   4.3  
sp|Q1GZL1|NUOC_METFK NADH-quinone oxidoreductase subunit C OS=Me...    30   5.6  
sp|Q9DEI1|PRKDC_XENLA DNA-dependent protein kinase catalytic sub...    29   9.6  
sp|Q8CNM5|AGRA_STAES Accessory gene regulator protein A OS=Staph...    29   9.6  
sp|Q5HMY2|AGRA_STAEQ Accessory gene regulator protein A OS=Staph...    29   9.6  

>sp|Q2HJI3|F136A_BOVIN Protein FAM136A OS=Bos taurus GN=FAM136A PE=2
           SV=1
          Length = 138

 Score = 30.4 bits (67), Expect = 4.3
 Identities = 18/66 (27%), Positives = 29/66 (43%), Gaps = 1/66 (1%)
 Frame = -3

Query: 376 DKCHESFVISQHGAEQTLTSWEKIVYKCTMYTILHPRSQADKSRLQYSSKPLHCS-VLDT 200
           ++CH     +Q      L  ++  + +CTMY      +   K  +   SK LH    L+T
Sbjct: 55  ERCHAPLAQAQALVTSELEKFQDRLARCTMYC-----NDKAKDSIDAGSKELHVKRQLET 109

Query: 199 CTIKCL 182
           C  KC+
Sbjct: 110 CVTKCV 115


>sp|Q1GZL1|NUOC_METFK NADH-quinone oxidoreductase subunit C
           OS=Methylobacillus flagellatus (strain KT / ATCC 51484 /
           DSM 6875) GN=nuoC PE=3 SV=1
          Length = 197

 Score = 30.0 bits (66), Expect = 5.6
 Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
 Frame = +3

Query: 294 HLYTIFSQLVNVCSAPCCDITKLSWH-LSFRTFHRFLSVVLQARI 425
           H    F QL+++C     D  + SW  L + T + FLSV L  R+
Sbjct: 48  HKLLKFEQLIDLCGVDYADYGEGSWSGLRYATVYHFLSVSLNQRL 92


>sp|Q9DEI1|PRKDC_XENLA DNA-dependent protein kinase catalytic subunit
            OS=Xenopus laevis GN=prkdc PE=2 SV=1
          Length = 4146

 Score = 29.3 bits (64), Expect = 9.6
 Identities = 15/59 (25%), Positives = 31/59 (52%)
 Frame = +3

Query: 228  LLEYWRRDLSAWLRGCSIVYMVHLYTIFSQLVNVCSAPCCDITKLSWHLSFRTFHRFLS 404
            +LE WRR  S W +       + + T+ ++++ + S+ C DI   ++   F+T+   L+
Sbjct: 1644 VLENWRRLDSWWYKDSPSESKMAVLTLLAKVLQIDSSVCFDINHSAFAEVFKTYTSILT 1702


>sp|Q8CNM5|AGRA_STAES Accessory gene regulator protein A
           OS=Staphylococcus epidermidis (strain ATCC 12228)
           GN=agrA PE=3 SV=1
          Length = 238

 Score = 29.3 bits (64), Expect = 9.6
 Identities = 13/25 (52%), Positives = 19/25 (76%)
 Frame = -3

Query: 373 KCHESFVISQHGAEQTLTSWEKIVY 299
           +CH SFVI++H  E ++ S E+IVY
Sbjct: 198 RCHNSFVINRHNIE-SIDSKERIVY 221


>sp|Q5HMY2|AGRA_STAEQ Accessory gene regulator protein A
           OS=Staphylococcus epidermidis (strain ATCC 35984 /
           RP62A) GN=agrA PE=3 SV=2
          Length = 238

 Score = 29.3 bits (64), Expect = 9.6
 Identities = 13/25 (52%), Positives = 19/25 (76%)
 Frame = -3

Query: 373 KCHESFVISQHGAEQTLTSWEKIVY 299
           +CH SFVI++H  E ++ S E+IVY
Sbjct: 198 RCHNSFVINRHNIE-SIDSKERIVY 221
tr_hit_id Q7CIP9
Definition tr|Q7CIP9|Q7CIP9_YERPE Putative regulatory protein OS=Yersinia pestis
Align length 83
Score (bit) 36.6
E-value 0.64
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP911747|Adiantum capillus-veneris mRNA, clone:
YMU001_000008_G01.
         (480 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q7CIP9|Q7CIP9_YERPE Putative regulatory protein OS=Yersinia p...    37   0.64 
tr|Q66A76|Q66A76_YERPS Putative regulatory protein OS=Yersinia p...    37   0.64 
tr|Q1CIQ5|Q1CIQ5_YERPN Regulatory protein OS=Yersinia pestis bv....    37   0.64 
tr|Q1C7C0|Q1C7C0_YERPA Putative regulatory protein OS=Yersinia p...    37   0.64 
tr|B2K5E3|B2K5E3_YERPB Transcriptional regulator, MerR family OS...    37   0.64 
tr|A9R8Q3|A9R8Q3_YERPG Transcriptional regulator, MerR family OS...    37   0.64 
tr|A7FHP7|A7FHP7_YERP3 Transcriptional regulator, MerR family OS...    37   0.64 
tr|A4TIV3|A4TIV3_YERPP Regulatory protein OS=Yersinia pestis (st...    37   0.64 
tr|B0HWM8|B0HWM8_YERPE Transcriptional regulator, MerR family OS...    37   0.64 
tr|B0HDN0|B0HDN0_YERPE Transcriptional regulator, MerR family OS...    37   0.64 
tr|B0H5J2|B0H5J2_YERPE Transcriptional regulator, MerR family OS...    37   0.64 
tr|B0GXJ0|B0GXJ0_YERPE Transcriptional regulator, MerR family OS...    37   0.64 
tr|B0GHQ6|B0GHQ6_YERPE Transcriptional regulator, MerR family OS...    37   0.64 
tr|B0A043|B0A043_YERPE Transcriptional regulator, MerR family OS...    37   0.64 
tr|A9ZAL4|A9ZAL4_YERPE Transcriptional regulator, MerR family OS...    37   0.64 
tr|A6BQ46|A6BQ46_YERPE Putative regulatory protein OS=Yersinia p...    37   0.64 
tr|B1JJT8|B1JJT8_YERPY Transcriptional regulator, MerR family OS...    35   1.4  
tr|Q6LZ73|Q6LZ73_METMP Putative uncharacterized protein OS=Metha...    33   5.4  
tr|A3X927|A3X927_9RHOB Glycosyl transferase, group 2 family prot...    33   7.0  
tr|B0EDY3|B0EDY3_ENTDI Putative uncharacterized protein OS=Entam...    33   7.0  

>tr|Q7CIP9|Q7CIP9_YERPE Putative regulatory protein OS=Yersinia
           pestis GN=soxR2 PE=4 SV=1
          Length = 279

 Score = 36.6 bits (83), Expect = 0.64
 Identities = 22/83 (26%), Positives = 44/83 (53%), Gaps = 3/83 (3%)
 Frame = -3

Query: 424 ILACKTTDRNLWKVLNDKCHESFVISQHGAEQTLTSWEKIVYKCTMY---TILHPRSQAD 254
           I+  ++  +N +K++N  C+E  +I++HG +    S+    YK ++     +    SQAD
Sbjct: 165 IVERESIQKNNYKLMNFFCNEPNIINKHGGDFPAGSYFSGFYKGSLENNPAVSKHLSQAD 224

Query: 253 KSRLQYSSKPLHCSVLDTCTIKC 185
            + + +SSK +   +    T+KC
Sbjct: 225 DNGMNHSSKVIIEHISGPATVKC 247


>tr|Q66A76|Q66A76_YERPS Putative regulatory protein OS=Yersinia
           pseudotuberculosis GN=YPTB2256 PE=4 SV=1
          Length = 279

 Score = 36.6 bits (83), Expect = 0.64
 Identities = 22/83 (26%), Positives = 44/83 (53%), Gaps = 3/83 (3%)
 Frame = -3

Query: 424 ILACKTTDRNLWKVLNDKCHESFVISQHGAEQTLTSWEKIVYKCTMY---TILHPRSQAD 254
           I+  ++  +N +K++N  C+E  +I++HG +    S+    YK ++     +    SQAD
Sbjct: 165 IVERESIQKNNYKLMNFFCNEPNIINKHGGDFPAGSYFSGFYKGSLENNPAVSKHLSQAD 224

Query: 253 KSRLQYSSKPLHCSVLDTCTIKC 185
            + + +SSK +   +    T+KC
Sbjct: 225 DNGMNHSSKVIIEHISGPATVKC 247


>tr|Q1CIQ5|Q1CIQ5_YERPN Regulatory protein OS=Yersinia pestis bv.
           Antiqua (strain Nepal516) GN=YPN_1796 PE=4 SV=1
          Length = 279

 Score = 36.6 bits (83), Expect = 0.64
 Identities = 22/83 (26%), Positives = 44/83 (53%), Gaps = 3/83 (3%)
 Frame = -3

Query: 424 ILACKTTDRNLWKVLNDKCHESFVISQHGAEQTLTSWEKIVYKCTMY---TILHPRSQAD 254
           I+  ++  +N +K++N  C+E  +I++HG +    S+    YK ++     +    SQAD
Sbjct: 165 IVERESIQKNNYKLMNFFCNEPNIINKHGGDFPAGSYFSGFYKGSLENNPAVSKHLSQAD 224

Query: 253 KSRLQYSSKPLHCSVLDTCTIKC 185
            + + +SSK +   +    T+KC
Sbjct: 225 DNGMNHSSKVIIEHISGPATVKC 247


>tr|Q1C7C0|Q1C7C0_YERPA Putative regulatory protein OS=Yersinia
           pestis bv. Antiqua (strain Antiqua) GN=YPA_1686 PE=4
           SV=1
          Length = 279

 Score = 36.6 bits (83), Expect = 0.64
 Identities = 22/83 (26%), Positives = 44/83 (53%), Gaps = 3/83 (3%)
 Frame = -3

Query: 424 ILACKTTDRNLWKVLNDKCHESFVISQHGAEQTLTSWEKIVYKCTMY---TILHPRSQAD 254
           I+  ++  +N +K++N  C+E  +I++HG +    S+    YK ++     +    SQAD
Sbjct: 165 IVERESIQKNNYKLMNFFCNEPNIINKHGGDFPAGSYFSGFYKGSLENNPAVSKHLSQAD 224

Query: 253 KSRLQYSSKPLHCSVLDTCTIKC 185
            + + +SSK +   +    T+KC
Sbjct: 225 DNGMNHSSKVIIEHISGPATVKC 247


>tr|B2K5E3|B2K5E3_YERPB Transcriptional regulator, MerR family
           OS=Yersinia pseudotuberculosis serotype IB (strain
           PB1/+) GN=YPTS_2333 PE=4 SV=1
          Length = 279

 Score = 36.6 bits (83), Expect = 0.64
 Identities = 22/83 (26%), Positives = 44/83 (53%), Gaps = 3/83 (3%)
 Frame = -3

Query: 424 ILACKTTDRNLWKVLNDKCHESFVISQHGAEQTLTSWEKIVYKCTMY---TILHPRSQAD 254
           I+  ++  +N +K++N  C+E  +I++HG +    S+    YK ++     +    SQAD
Sbjct: 165 IVERESIQKNNYKLMNFFCNEPNIINKHGGDFPAGSYFSGFYKGSLENNPAVSKHLSQAD 224

Query: 253 KSRLQYSSKPLHCSVLDTCTIKC 185
            + + +SSK +   +    T+KC
Sbjct: 225 DNGMNHSSKVIIEHISGPATVKC 247


>tr|A9R8Q3|A9R8Q3_YERPG Transcriptional regulator, MerR family
           OS=Yersinia pestis bv. Antiqua (strain Angola)
           GN=YpAngola_A2204 PE=4 SV=1
          Length = 279

 Score = 36.6 bits (83), Expect = 0.64
 Identities = 22/83 (26%), Positives = 44/83 (53%), Gaps = 3/83 (3%)
 Frame = -3

Query: 424 ILACKTTDRNLWKVLNDKCHESFVISQHGAEQTLTSWEKIVYKCTMY---TILHPRSQAD 254
           I+  ++  +N +K++N  C+E  +I++HG +    S+    YK ++     +    SQAD
Sbjct: 165 IVERESIQKNNYKLMNFFCNEPNIINKHGGDFPAGSYFSGFYKGSLENNPAVSKHLSQAD 224

Query: 253 KSRLQYSSKPLHCSVLDTCTIKC 185
            + + +SSK +   +    T+KC
Sbjct: 225 DNGMNHSSKVIIEHISGPATVKC 247


>tr|A7FHP7|A7FHP7_YERP3 Transcriptional regulator, MerR family
           OS=Yersinia pseudotuberculosis serotype O:1b (strain IP
           31758) GN=YpsIP31758_1800 PE=4 SV=1
          Length = 279

 Score = 36.6 bits (83), Expect = 0.64
 Identities = 22/83 (26%), Positives = 44/83 (53%), Gaps = 3/83 (3%)
 Frame = -3

Query: 424 ILACKTTDRNLWKVLNDKCHESFVISQHGAEQTLTSWEKIVYKCTMY---TILHPRSQAD 254
           I+  ++  +N +K++N  C+E  +I++HG +    S+    YK ++     +    SQAD
Sbjct: 165 IVERESIQKNNYKLMNFFCNEPNIINKHGGDFPAGSYFSGFYKGSLENNPAVSKHLSQAD 224

Query: 253 KSRLQYSSKPLHCSVLDTCTIKC 185
            + + +SSK +   +    T+KC
Sbjct: 225 DNGMNHSSKVIIEHISGPATVKC 247


>tr|A4TIV3|A4TIV3_YERPP Regulatory protein OS=Yersinia pestis
           (strain Pestoides F) GN=YPDSF_0809 PE=4 SV=1
          Length = 279

 Score = 36.6 bits (83), Expect = 0.64
 Identities = 22/83 (26%), Positives = 44/83 (53%), Gaps = 3/83 (3%)
 Frame = -3

Query: 424 ILACKTTDRNLWKVLNDKCHESFVISQHGAEQTLTSWEKIVYKCTMY---TILHPRSQAD 254
           I+  ++  +N +K++N  C+E  +I++HG +    S+    YK ++     +    SQAD
Sbjct: 165 IVERESIQKNNYKLMNFFCNEPNIINKHGGDFPAGSYFSGFYKGSLENNPAVSKHLSQAD 224

Query: 253 KSRLQYSSKPLHCSVLDTCTIKC 185
            + + +SSK +   +    T+KC
Sbjct: 225 DNGMNHSSKVIIEHISGPATVKC 247


>tr|B0HWM8|B0HWM8_YERPE Transcriptional regulator, MerR family
           OS=Yersinia pestis biovar Antiqua str. E1979001
           GN=YpE1979001_4121 PE=4 SV=1
          Length = 279

 Score = 36.6 bits (83), Expect = 0.64
 Identities = 22/83 (26%), Positives = 44/83 (53%), Gaps = 3/83 (3%)
 Frame = -3

Query: 424 ILACKTTDRNLWKVLNDKCHESFVISQHGAEQTLTSWEKIVYKCTMY---TILHPRSQAD 254
           I+  ++  +N +K++N  C+E  +I++HG +    S+    YK ++     +    SQAD
Sbjct: 165 IVERESIQKNNYKLMNFFCNEPNIINKHGGDFPAGSYFSGFYKGSLENNPAVSKHLSQAD 224

Query: 253 KSRLQYSSKPLHCSVLDTCTIKC 185
            + + +SSK +   +    T+KC
Sbjct: 225 DNGMNHSSKVIIEHISGPATVKC 247


>tr|B0HDN0|B0HDN0_YERPE Transcriptional regulator, MerR family
           OS=Yersinia pestis biovar Antiqua str. B42003004
           GN=YpB42003004_1735 PE=4 SV=1
          Length = 279

 Score = 36.6 bits (83), Expect = 0.64
 Identities = 22/83 (26%), Positives = 44/83 (53%), Gaps = 3/83 (3%)
 Frame = -3

Query: 424 ILACKTTDRNLWKVLNDKCHESFVISQHGAEQTLTSWEKIVYKCTMY---TILHPRSQAD 254
           I+  ++  +N +K++N  C+E  +I++HG +    S+    YK ++     +    SQAD
Sbjct: 165 IVERESIQKNNYKLMNFFCNEPNIINKHGGDFPAGSYFSGFYKGSLENNPAVSKHLSQAD 224

Query: 253 KSRLQYSSKPLHCSVLDTCTIKC 185
            + + +SSK +   +    T+KC
Sbjct: 225 DNGMNHSSKVIIEHISGPATVKC 247