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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP911748
Clone id YMU001_000008_G03
Library
Length 503
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000008_G03.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
AAGAATTCGCGGCCGCAGGAATTTTATTGTGTAATTTTTGCCAACGTTGCTCATACAGAG
CATATAATTTACATAATCCTATTCAATTGGGATGAACTACGGTAGGGTCATACCGGCCAT
TTTCTGACCAGTTTGACAAGTTAAAGTGCAATGAGATGTACCCTCATGTAAGCACCCATG
CACTTCTCTTTGGGTAACTCACCTACCCTAACAAAGCATACAACAGATATCTATAATGCA
TGAAACACATATGTACAGCACATAGATTGTGTCTTCCAGAGAAACAAATGCTCCACCACT
GGGAAATGCGACATATTAAGCCTAGATGCCATCTGTGCTACTTAATAATATGTACATCGC
GGATCAAAGAACAGCTTCTGCCCGAGCCTTAAGACACAGTATCGGTGCACACAATAATAG
GGGTTTGCACTACGTCAATTCACGGCACTCCTTCTGTATTGAGCATTCTTGCACATTTAG
TACGCAGTGCATCTGTTGCCAAT
■■Homology search results ■■ -
sp_hit_id Q95JR6
Definition sp|Q95JR6|CT152_MACFA Uncharacterized protein C20orf152 homolog OS=Macaca fascicularis
Align length 20
Score (bit) 32.0
E-value 1.5
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP911748|Adiantum capillus-veneris mRNA, clone:
YMU001_000008_G03.
         (478 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q95JR6|CT152_MACFA Uncharacterized protein C20orf152 homolog ...    32   1.5  
sp|Q96M20|CT152_HUMAN Uncharacterized protein C20orf152 OS=Homo ...    31   2.5  
sp|Q9IA11|HXD5_HETFR Homeobox protein Hox-D5 OS=Heterodontus fra...    30   4.3  
sp|P18865|HXC4_RAT Homeobox protein Hox-C4 (Fragment) OS=Rattus ...    30   4.3  
sp|Q08624|HXC4_MOUSE Homeobox protein Hox-C4 OS=Mus musculus GN=...    30   4.3  
sp|P09017|HXC4_HUMAN Homeobox protein Hox-C4 OS=Homo sapiens GN=...    30   4.3  
sp|P18864|HXB7_RAT Homeobox protein Hox-B7 OS=Rattus norvegicus ...    30   4.3  
sp|P09024|HXB7_MOUSE Homeobox protein Hox-B7 OS=Mus musculus GN=...    30   4.3  
sp|P09629|HXB7_HUMAN Homeobox protein Hox-B7 OS=Homo sapiens GN=...    30   4.3  
sp|A1YFA5|HXB7_GORGO Homeobox protein Hox-B7 OS=Gorilla gorilla ...    30   4.3  
sp|Q9TT89|HXB7_BOVIN Homeobox protein Hox-B7 OS=Bos taurus GN=HO...    30   4.3  
sp|P09023|HXB6_MOUSE Homeobox protein Hox-B6 OS=Mus musculus GN=...    30   4.3  
sp|P17509|HXB6_HUMAN Homeobox protein Hox-B6 OS=Homo sapiens GN=...    30   4.3  
sp|P15860|HM90_APIME Homeobox protein H90 (Fragment) OS=Apis mel...    30   4.3  
sp|P10284|HXB4_MOUSE Homeobox protein Hox-B4 OS=Mus musculus GN=...    30   5.6  
sp|P17483|HXB4_HUMAN Homeobox protein Hox-B4 OS=Homo sapiens GN=...    30   5.6  
sp|P14840|HXB4_CHICK Homeobox protein Hox-B4 OS=Gallus gallus GN...    30   5.6  
sp|Q08DG5|HXB4_BOVIN Homeobox protein Hox-B4 OS=Bos taurus GN=HO...    30   5.6  
sp|O13074|HXB4A_FUGRU Homeobox protein Hox-B4a OS=Fugu rubripes ...    30   5.6  
sp|P22574|HXB4A_DANRE Homeobox protein Hox-B4a OS=Danio rerio GN...    30   5.6  

>sp|Q95JR6|CT152_MACFA Uncharacterized protein C20orf152 homolog
           OS=Macaca fascicularis GN=QtsA-11192 PE=2 SV=1
          Length = 585

 Score = 32.0 bits (71), Expect = 1.5
 Identities = 12/20 (60%), Positives = 16/20 (80%)
 Frame = -1

Query: 184 RVGELPKEKCMGAYMRVHLI 125
           + GELPKE  +GAYM+VH +
Sbjct: 398 KFGELPKEAAVGAYMKVHTV 417


>sp|Q96M20|CT152_HUMAN Uncharacterized protein C20orf152 OS=Homo
           sapiens GN=C20orf152 PE=2 SV=2
          Length = 576

 Score = 31.2 bits (69), Expect = 2.5
 Identities = 11/21 (52%), Positives = 17/21 (80%)
 Frame = -1

Query: 187 VRVGELPKEKCMGAYMRVHLI 125
           ++ GELPKE  +GAY++VH +
Sbjct: 397 IKPGELPKEAAVGAYVKVHTV 417


>sp|Q9IA11|HXD5_HETFR Homeobox protein Hox-D5 OS=Heterodontus
           francisci GN=HOXD5 PE=3 SV=1
          Length = 252

 Score = 30.4 bits (67), Expect = 4.3
 Identities = 15/34 (44%), Positives = 21/34 (61%)
 Frame = +2

Query: 194 YNRYL*CMKHICTAHRLCLPEKQMLHHWEMRHIK 295
           YNRYL   + I  AH LCL E+Q+   ++ R +K
Sbjct: 198 YNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMK 231


>sp|P18865|HXC4_RAT Homeobox protein Hox-C4 (Fragment) OS=Rattus
           norvegicus GN=Hoxc4 PE=2 SV=1
          Length = 76

 Score = 30.4 bits (67), Expect = 4.3
 Identities = 15/34 (44%), Positives = 21/34 (61%)
 Frame = +2

Query: 194 YNRYL*CMKHICTAHRLCLPEKQMLHHWEMRHIK 295
           YNRYL   + I  AH LCL E+Q+   ++ R +K
Sbjct: 32  YNRYLTRRRRIEIAHSLCLSERQIKIWFQNRRMK 65


>sp|Q08624|HXC4_MOUSE Homeobox protein Hox-C4 OS=Mus musculus
           GN=Hoxc4 PE=2 SV=1
          Length = 264

 Score = 30.4 bits (67), Expect = 4.3
 Identities = 15/34 (44%), Positives = 21/34 (61%)
 Frame = +2

Query: 194 YNRYL*CMKHICTAHRLCLPEKQMLHHWEMRHIK 295
           YNRYL   + I  AH LCL E+Q+   ++ R +K
Sbjct: 177 YNRYLTRRRRIEIAHSLCLSERQIKIWFQNRRMK 210


>sp|P09017|HXC4_HUMAN Homeobox protein Hox-C4 OS=Homo sapiens
           GN=HOXC4 PE=2 SV=1
          Length = 264

 Score = 30.4 bits (67), Expect = 4.3
 Identities = 15/34 (44%), Positives = 21/34 (61%)
 Frame = +2

Query: 194 YNRYL*CMKHICTAHRLCLPEKQMLHHWEMRHIK 295
           YNRYL   + I  AH LCL E+Q+   ++ R +K
Sbjct: 177 YNRYLTRRRRIEIAHSLCLSERQIKIWFQNRRMK 210


>sp|P18864|HXB7_RAT Homeobox protein Hox-B7 OS=Rattus norvegicus
           GN=Hoxb7 PE=2 SV=2
          Length = 219

 Score = 30.4 bits (67), Expect = 4.3
 Identities = 15/34 (44%), Positives = 21/34 (61%)
 Frame = +2

Query: 194 YNRYL*CMKHICTAHRLCLPEKQMLHHWEMRHIK 295
           YNRYL   + I  AH LCL E+Q+   ++ R +K
Sbjct: 158 YNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMK 191


>sp|P09024|HXB7_MOUSE Homeobox protein Hox-B7 OS=Mus musculus
           GN=Hoxb7 PE=1 SV=2
          Length = 217

 Score = 30.4 bits (67), Expect = 4.3
 Identities = 15/34 (44%), Positives = 21/34 (61%)
 Frame = +2

Query: 194 YNRYL*CMKHICTAHRLCLPEKQMLHHWEMRHIK 295
           YNRYL   + I  AH LCL E+Q+   ++ R +K
Sbjct: 158 YNRYLTRRRRIEIAHTLCLTERQIKIWFQNRRMK 191


>sp|P09629|HXB7_HUMAN Homeobox protein Hox-B7 OS=Homo sapiens
           GN=HOXB7 PE=1 SV=2
          Length = 217

 Score = 30.4 bits (67), Expect = 4.3
 Identities = 15/34 (44%), Positives = 21/34 (61%)
 Frame = +2

Query: 194 YNRYL*CMKHICTAHRLCLPEKQMLHHWEMRHIK 295
           YNRYL   + I  AH LCL E+Q+   ++ R +K
Sbjct: 158 YNRYLTRRRRIEIAHTLCLTERQIKIWFQNRRMK 191


>sp|A1YFA5|HXB7_GORGO Homeobox protein Hox-B7 OS=Gorilla gorilla
           gorilla GN=HOXB7 PE=3 SV=1
          Length = 217

 Score = 30.4 bits (67), Expect = 4.3
 Identities = 15/34 (44%), Positives = 21/34 (61%)
 Frame = +2

Query: 194 YNRYL*CMKHICTAHRLCLPEKQMLHHWEMRHIK 295
           YNRYL   + I  AH LCL E+Q+   ++ R +K
Sbjct: 158 YNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMK 191
tr_hit_id A1TQ99
Definition tr|A1TQ99|A1TQ99_ACIAC Lipid-A-disaccharide synthase OS=Acidovorax avenae subsp. citrulli (strain AAC00-1)
Align length 54
Score (bit) 34.3
E-value 3.2
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP911748|Adiantum capillus-veneris mRNA, clone:
YMU001_000008_G03.
         (478 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A1TQ99|A1TQ99_ACIAC Lipid-A-disaccharide synthase OS=Acidovor...    34   3.2  
tr|Q03HC5|Q03HC5_PEDPA Kef-type K+ transport system, predicted N...    34   4.1  
tr|Q3AI25|Q3AI25_SYNSC Putative multidrug efflux transporter, MF...    33   5.4  

>tr|A1TQ99|A1TQ99_ACIAC Lipid-A-disaccharide synthase OS=Acidovorax
           avenae subsp. citrulli (strain AAC00-1) GN=Aave_2564
           PE=4 SV=1
          Length = 347

 Score = 34.3 bits (77), Expect = 3.2
 Identities = 15/54 (27%), Positives = 31/54 (57%)
 Frame = -2

Query: 444 RMLNTEGVP*IDVVQTPIIVCTDTVS*GSGRSCSLIRDVHIIK*HRWHLGLICR 283
           R+L   GV  ++ +  P++V  + V+ G+G++   +  V  ++ H WH G++ R
Sbjct: 47  RLLYVRGVLRVERLPVPVVVVGNVVAGGAGKTPVTLAVVQALRRHGWHPGVVSR 100


>tr|Q03HC5|Q03HC5_PEDPA Kef-type K+ transport system, predicted
           NAD-binding component OS=Pediococcus pentosaceus (strain
           ATCC 25745 / 183-1w) GN=PEPE_0300 PE=4 SV=1
          Length = 250

 Score = 33.9 bits (76), Expect = 4.1
 Identities = 25/74 (33%), Positives = 35/74 (47%), Gaps = 2/74 (2%)
 Frame = -2

Query: 357 GRSCSLIRDVHIIK*HRWHLGLICRISQWWS--ICFSGRHNLCAVHMCFMHYRYLLYALL 184
           GR   LIR  H++    W  GL  + S+     I  SG  NL  V M  +    LLY+++
Sbjct: 95  GRVFKLIRSHHLL----WRFGLDGKFSKTVHRFIYTSGFLNLFTVSMIILVLSSLLYSVV 150

Query: 183 G*VSYPKRSAWVLT 142
             +SYP    W +T
Sbjct: 151 EHISYPSALWWAIT 164


>tr|Q3AI25|Q3AI25_SYNSC Putative multidrug efflux transporter, MFS
           family OS=Synechococcus sp. (strain CC9605)
           GN=Syncc9605_2016 PE=4 SV=1
          Length = 459

 Score = 33.5 bits (75), Expect = 5.4
 Identities = 21/52 (40%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
 Frame = +2

Query: 308 LCYLI--ICTSRIKEQLLPEP*DTVSVHTIIGVCTTSIHGTPSVLSILAHLV 457
           LCY +  +  SR+K Q  P+P  T SV T IG     +   PSV   + HLV
Sbjct: 239 LCYSLAALSLSRLKLQEAPKPPSTTSVWTEIGEGLQVLRRVPSVRGAMIHLV 290