BP911749 |
Clone id |
YMU001_000008_G04 |
Library |
YMU01 |
Length |
305 |
Definition |
Adiantum capillus-veneris mRNA. clone: YMU001_000008_G04. |
Accession |
BP911749 |
Tissue type |
prothallium |
Developmental stage |
- |
Contig ID |
CL31Contig1 |
Sequence |
TCGTGAAGTGGTTGCCATTGTGATGCAGCGACTCATCTCTGTGGATGGGAAAGTCAGGAC GGACAAGTGTTACCCTGCTGGGTTTATGGATGTTGTGTCCATAGCAAAAACCGGAGAGAA CTTCCGGTTGCTTTATGATAGCAAAGGAAGATCCAGCTTGCACTCCATAAGCCTTGAAGA GGCTAAGTACAAGCTATGCAAGGTCCGAGCTGCCTGCTGCGGCGAGAAGGGGATTCCCTA CATCACTACATTTGATGGGCGCACCATTCGCTATCCAGATCCCCTTATCAAGGCCAATGA CACCA |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q8VYK6 |
Definition |
sp|Q8VYK6|RS43_ARATH 40S ribosomal protein S4-3 OS=Arabidopsis thaliana |
Align length |
101 |
Score (bit) |
160.0 |
E-value |
1.0e-39 |
Report |
 BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= BP911749|Adiantum capillus-veneris mRNA, clone: YMU001_000008_G04. (305 letters)
Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
sp|Q8VYK6|RS43_ARATH 40S ribosomal protein S4-3 OS=Arabidopsis t... 160 1e-39 sp|P49204|RS42_ARATH 40S ribosomal protein S4-2 OS=Arabidopsis t... 160 1e-39 sp|Q93VH9|RS41_ARATH 40S ribosomal protein S4-1 OS=Arabidopsis t... 160 1e-39 sp|P46300|RS4_SOLTU 40S ribosomal protein S4 OS=Solanum tuberosu... 160 2e-39 sp|P46299|RS4_GOSHI 40S ribosomal protein S4 OS=Gossypium hirsut... 158 9e-39 sp|P49398|RS4_ORYSJ 40S ribosomal protein S4 OS=Oryza sativa sub... 157 2e-38 sp|O22424|RS4_MAIZE 40S ribosomal protein S4 OS=Zea mays GN=RPS4... 157 2e-38 sp|Q9USW5|RS4B_SCHPO 40S ribosomal protein S4-B OS=Schizosacchar... 150 2e-36 sp|P87158|RS4A_SCHPO 40S ribosomal protein S4-A OS=Schizosacchar... 150 2e-36 sp|Q9P4W9|RS4C_SCHPO 40S ribosomal protein S4-C OS=Schizosacchar... 150 2e-36 sp|P47961|RS4_CRIGR 40S ribosomal protein S4 OS=Cricetulus grise... 147 1e-35 sp|P55832|RS4_HORSE 40S ribosomal protein S4 (Fragment) OS=Equus... 147 2e-35 sp|Q4GXU6|RS4_CARGR 40S ribosomal protein S4 OS=Carabus granulat... 147 2e-35 sp|P79103|RS4_BOVIN 40S ribosomal protein S4 OS=Bos taurus GN=RP... 147 2e-35 sp|P62703|RS4X_RAT 40S ribosomal protein S4, X isoform OS=Rattus... 147 2e-35 sp|P62702|RS4X_MOUSE 40S ribosomal protein S4, X isoform OS=Mus ... 147 2e-35 sp|P62704|RS4X_MESAU 40S ribosomal protein S4, X isoform OS=Meso... 147 2e-35 sp|Q76MY1|RS4X_MACFU 40S ribosomal protein S4, X isoform OS=Maca... 147 2e-35 sp|P62701|RS4X_HUMAN 40S ribosomal protein S4, X isoform OS=Homo... 147 2e-35 sp|P62705|RS4X_FELCA 40S ribosomal protein S4, X isoform OS=Feli... 147 2e-35 sp|Q76N24|RS4X_CERAE 40S ribosomal protein S4, X isoform OS=Cerc... 147 2e-35 sp|Q56FH2|RS4_LYSTE 40S ribosomal protein S4 OS=Lysiphlebus test... 147 2e-35 sp|Q90YS0|RS4_ICTPU 40S ribosomal protein S4 OS=Ictalurus puncta... 147 2e-35 sp|Q6PBC4|RS4_XENTR 40S ribosomal protein S4 OS=Xenopus tropical... 146 3e-35 sp|P49401|RS4_XENLA 40S ribosomal protein S4 OS=Xenopus laevis G... 146 4e-35 sp|P47836|RS4_CHICK 40S ribosomal protein S4 OS=Gallus gallus GN... 146 4e-35 sp|O59950|RS4_YARLI 40S ribosomal protein S4 OS=Yarrowia lipolyt... 145 5e-35 sp|Q642H9|RS4X_DANRE 40S ribosomal protein S4, X isoform OS=Dani... 145 5e-35 sp|Q4PMB3|RS4_IXOSC 40S ribosomal protein S4 OS=Ixodes scapulari... 145 6e-35 sp|Q6GVM7|RS4Y2_PANTR 40S ribosomal protein S4, Y isoform 2 OS=P... 145 6e-35
>sp|Q8VYK6|RS43_ARATH 40S ribosomal protein S4-3 OS=Arabidopsis thaliana GN=RPS4D PE=2 SV=2 Length = 262
Score = 160 bits (406), Expect = 1e-39 Identities = 78/101 (77%), Positives = 87/101 (86%) Frame = +2
Query: 2 REVVAIVMQRLISVDGKVRTDKCYPAGFMDVVSIAKTGENFRLLYDSKGRSSLHSISLEE 181 REV++I+MQR I VDGKVRTDK YPAGFMDVVSI KT ENFRLLYD+KGR LHSI EE Sbjct: 59 REVISILMQRHIQVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIKDEE 118
Query: 182 AKYKLCKVRAACCGEKGIPYITTFDGRTIRYPDPLIKANDT 304 AK+KLCKVR+ G+KGIPY+ T+DGRTIRYPDPLIK NDT Sbjct: 119 AKFKLCKVRSIQFGQKGIPYLNTYDGRTIRYPDPLIKPNDT 159
>sp|P49204|RS42_ARATH 40S ribosomal protein S4-2 OS=Arabidopsis thaliana GN=RPS4B PE=2 SV=4 Length = 262
Score = 160 bits (406), Expect = 1e-39 Identities = 78/101 (77%), Positives = 87/101 (86%) Frame = +2
Query: 2 REVVAIVMQRLISVDGKVRTDKCYPAGFMDVVSIAKTGENFRLLYDSKGRSSLHSISLEE 181 REV++I+MQR I VDGKVRTDK YPAGFMDVVSI KT ENFRLLYD+KGR LHSI EE Sbjct: 59 REVISILMQRHIQVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIKDEE 118
Query: 182 AKYKLCKVRAACCGEKGIPYITTFDGRTIRYPDPLIKANDT 304 AK+KLCKVR+ G+KGIPY+ T+DGRTIRYPDPLIK NDT Sbjct: 119 AKFKLCKVRSIQFGQKGIPYLNTYDGRTIRYPDPLIKPNDT 159
>sp|Q93VH9|RS41_ARATH 40S ribosomal protein S4-1 OS=Arabidopsis thaliana GN=RPS4A PE=2 SV=1 Length = 261
Score = 160 bits (406), Expect = 1e-39 Identities = 78/101 (77%), Positives = 87/101 (86%) Frame = +2
Query: 2 REVVAIVMQRLISVDGKVRTDKCYPAGFMDVVSIAKTGENFRLLYDSKGRSSLHSISLEE 181 REV++I+MQR I VDGKVRTDK YPAGFMDVVSI KT ENFRLLYD+KGR LHSI EE Sbjct: 59 REVISILMQRHIQVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIKDEE 118
Query: 182 AKYKLCKVRAACCGEKGIPYITTFDGRTIRYPDPLIKANDT 304 AK+KLCKVR+ G+KGIPY+ T+DGRTIRYPDPLIK NDT Sbjct: 119 AKFKLCKVRSIQFGQKGIPYLNTYDGRTIRYPDPLIKPNDT 159
>sp|P46300|RS4_SOLTU 40S ribosomal protein S4 OS=Solanum tuberosum GN=RPS4 PE=2 SV=1 Length = 264
Score = 160 bits (405), Expect = 2e-39 Identities = 76/101 (75%), Positives = 88/101 (87%) Frame = +2
Query: 2 REVVAIVMQRLISVDGKVRTDKCYPAGFMDVVSIAKTGENFRLLYDSKGRSSLHSISLEE 181 REV++I+MQR + VDGKVRTDK YPAGFMDVVSI KT ENFRLLYD+KGR LHS+ EE Sbjct: 59 REVISILMQRQVMVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEE 118
Query: 182 AKYKLCKVRAACCGEKGIPYITTFDGRTIRYPDPLIKANDT 304 +K+KLCKVR+ G+KGIPY+ T+DGRTIRYPDPLIKANDT Sbjct: 119 SKFKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDT 159
>sp|P46299|RS4_GOSHI 40S ribosomal protein S4 OS=Gossypium hirsutum GN=RPS4 PE=2 SV=1 Length = 262
Score = 158 bits (399), Expect = 9e-39 Identities = 75/101 (74%), Positives = 88/101 (87%) Frame = +2
Query: 2 REVVAIVMQRLISVDGKVRTDKCYPAGFMDVVSIAKTGENFRLLYDSKGRSSLHSISLEE 181 REV+AI+MQR + VDGKVRTDK YPAGFMDVVSI KT E+FRLLYD+KGR LH+I+ +E Sbjct: 59 REVIAILMQRHVMVDGKVRTDKTYPAGFMDVVSIPKTNEDFRLLYDTKGRFCLHAITGDE 118
Query: 182 AKYKLCKVRAACCGEKGIPYITTFDGRTIRYPDPLIKANDT 304 K+KLCKVR+ G+KGIPY+ T+DGRTIRYPDPLIKANDT Sbjct: 119 TKFKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDT 159
>sp|P49398|RS4_ORYSJ 40S ribosomal protein S4 OS=Oryza sativa subsp. japonica GN=RPS4 PE=2 SV=3 Length = 265
Score = 157 bits (397), Expect = 2e-38 Identities = 73/101 (72%), Positives = 88/101 (87%) Frame = +2
Query: 2 REVVAIVMQRLISVDGKVRTDKCYPAGFMDVVSIAKTGENFRLLYDSKGRSSLHSISLEE 181 REV++I+MQR + VDGKVRTDK YPAGFMDV+SI KTGEN+RLLYD+KGR L S+ E+ Sbjct: 59 REVISILMQRHVLVDGKVRTDKTYPAGFMDVISIPKTGENYRLLYDTKGRFRLQSVKDED 118
Query: 182 AKYKLCKVRAACCGEKGIPYITTFDGRTIRYPDPLIKANDT 304 AK+KLCKVR+ G+KGIPY+ T+DGRTIRYPDP+IKANDT Sbjct: 119 AKFKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPIIKANDT 159
>sp|O22424|RS4_MAIZE 40S ribosomal protein S4 OS=Zea mays GN=RPS4 PE=2 SV=1 Length = 265
Score = 157 bits (396), Expect = 2e-38 Identities = 74/101 (73%), Positives = 87/101 (86%) Frame = +2
Query: 2 REVVAIVMQRLISVDGKVRTDKCYPAGFMDVVSIAKTGENFRLLYDSKGRSSLHSISLEE 181 REV++I+MQR + VDGKVRTDK YPAGFMDV+SI KT EN+RLLYD+KGR LH I E+ Sbjct: 59 REVISILMQRHVLVDGKVRTDKTYPAGFMDVISIPKTNENYRLLYDTKGRFRLHPIRDED 118
Query: 182 AKYKLCKVRAACCGEKGIPYITTFDGRTIRYPDPLIKANDT 304 AK+KLCKVR+ G+KGIPY+ T+DGRTIRYPDPLIKANDT Sbjct: 119 AKFKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDT 159
>sp|Q9USW5|RS4B_SCHPO 40S ribosomal protein S4-B OS=Schizosaccharomyces pombe GN=rps4b PE=1 SV=1 Length = 262
Score = 150 bits (379), Expect = 2e-36 Identities = 70/101 (69%), Positives = 83/101 (82%) Frame = +2
Query: 2 REVVAIVMQRLISVDGKVRTDKCYPAGFMDVVSIAKTGENFRLLYDSKGRSSLHSISLEE 181 REV AI+MQRLI VDGKVRTD +P GFMDV+S+ KTGE+FRL+YD KGR ++H I+ EE Sbjct: 59 REVKAILMQRLIQVDGKVRTDSTFPTGFMDVISVEKTGEHFRLVYDIKGRFTVHRITAEE 118
Query: 182 AKYKLCKVRAACCGEKGIPYITTFDGRTIRYPDPLIKANDT 304 AKYKLCKV+ G KG+P++ T DGRTIRYPDPLIK NDT Sbjct: 119 AKYKLCKVKRVQLGAKGVPFLVTHDGRTIRYPDPLIKVNDT 159
>sp|P87158|RS4A_SCHPO 40S ribosomal protein S4-A OS=Schizosaccharomyces pombe GN=rps4a PE=2 SV=2 Length = 262
Score = 150 bits (379), Expect = 2e-36 Identities = 70/101 (69%), Positives = 83/101 (82%) Frame = +2
Query: 2 REVVAIVMQRLISVDGKVRTDKCYPAGFMDVVSIAKTGENFRLLYDSKGRSSLHSISLEE 181 REV AI+MQRLI VDGKVRTD +P GFMDV+S+ KTGE+FRL+YD KGR ++H I+ EE Sbjct: 59 REVKAILMQRLIKVDGKVRTDSTFPTGFMDVISVEKTGEHFRLVYDIKGRFTVHRITAEE 118
Query: 182 AKYKLCKVRAACCGEKGIPYITTFDGRTIRYPDPLIKANDT 304 AKYKLCKV+ G KG+P++ T DGRTIRYPDPLIK NDT Sbjct: 119 AKYKLCKVKRVQLGAKGVPFLVTHDGRTIRYPDPLIKVNDT 159
>sp|Q9P4W9|RS4C_SCHPO 40S ribosomal protein S4-C OS=Schizosaccharomyces pombe GN=rps4c PE=1 SV=1 Length = 262
Score = 150 bits (378), Expect = 2e-36 Identities = 70/101 (69%), Positives = 83/101 (82%) Frame = +2
Query: 2 REVVAIVMQRLISVDGKVRTDKCYPAGFMDVVSIAKTGENFRLLYDSKGRSSLHSISLEE 181 REV AI+MQRLI VDGKVRTD +P GFMDV+S+ KTGE+FRL+YD KGR ++H I+ EE Sbjct: 59 REVKAILMQRLIKVDGKVRTDSTFPTGFMDVISVDKTGEHFRLVYDIKGRFTVHRITAEE 118
Query: 182 AKYKLCKVRAACCGEKGIPYITTFDGRTIRYPDPLIKANDT 304 AKYKLCKV+ G KG+P++ T DGRTIRYPDPLIK NDT Sbjct: 119 AKYKLCKVKRVQLGAKGVPFLVTHDGRTIRYPDPLIKVNDT 159
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A9S0Q0 |
Definition |
tr|A9S0Q0|A9S0Q0_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens |
Align length |
101 |
Score (bit) |
184.0 |
E-value |
3.0e-45 |
Report |
 |