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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP911755
Clone id YMU001_000008_G10
Library
Length 494
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000008_G10.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
CAAACTGAACCACATCTTTATACATGGATTTCCAAATAGTATCAATCTTAATATTTGACA
TAGTAGCCCAAACACCTTTGTGTCCAACCCACAAACTCTTGTGAAACTCTTTGAGTACCT
GTTGTTGAATAGCTTTGTGACATAAAATCCATTGTGAAACTCCTTTAGCTAGCTTTGGCT
GCTGCCACAAACGTCCATAATTCAAGAAGTAGCCATAAGCCTTCTTTCAAATCTTCTTGA
ACTCTACATCACTTCAATAATCTTGGTTCTCAAGTGTACCAAGATAGCGACCAATAATTG
GCCACTCACCATCATACATAGACTCAGTAAATGCTTCAAACACTTGAGCAATAGAACCTC
AATTAGCATGAATGAGATGATGTATAGAAATTCAAACCCACATCATCACTCGTTGTTAGC
ATCTCCTCGTCATCTTCATACCTAGCTCGAGACAACATGTCAACAACTGGATTATCTCTC
CGGTAATGTGATGA
■■Homology search results ■■ -
sp_hit_id Q566I1
Definition sp|Q566I1|IN80D_XENLA INO80 complex subunit D OS=Xenopus laevis
Align length 27
Score (bit) 30.4
E-value 4.6
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP911755|Adiantum capillus-veneris mRNA, clone:
YMU001_000008_G10.
         (494 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q566I1|IN80D_XENLA INO80 complex subunit D OS=Xenopus laevis ...    30   4.6  
sp|Q66JY2|IN80D_MOUSE INO80 complex subunit D OS=Mus musculus GN...    30   4.6  
sp|Q53TQ3|IN80D_HUMAN INO80 complex subunit D OS=Homo sapiens GN...    30   4.6  
sp|Q09708|YAGG_SCHPO Uncharacterized protein C12G12.16c OS=Schiz...    30   6.0  
sp|O29622|SYI_ARCFU Isoleucyl-tRNA synthetase OS=Archaeoglobus f...    30   6.0  

>sp|Q566I1|IN80D_XENLA INO80 complex subunit D OS=Xenopus laevis
           GN=ino80d PE=2 SV=1
          Length = 812

 Score = 30.4 bits (67), Expect = 4.6
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = +3

Query: 12  TSLYMDFQIVSILIFDIVAQTPLCPTH 92
           T+ + D Q  S+ +FDI  QTPLC  H
Sbjct: 483 TAKFADGQQCSVPVFDITHQTPLCEEH 509


>sp|Q66JY2|IN80D_MOUSE INO80 complex subunit D OS=Mus musculus
           GN=Ino80d PE=2 SV=2
          Length = 873

 Score = 30.4 bits (67), Expect = 4.6
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = +3

Query: 12  TSLYMDFQIVSILIFDIVAQTPLCPTH 92
           T+ + D Q  S+ +FDI  QTPLC  H
Sbjct: 480 TAKFADGQQCSVPVFDITHQTPLCEEH 506


>sp|Q53TQ3|IN80D_HUMAN INO80 complex subunit D OS=Homo sapiens
           GN=INO80D PE=1 SV=2
          Length = 878

 Score = 30.4 bits (67), Expect = 4.6
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = +3

Query: 12  TSLYMDFQIVSILIFDIVAQTPLCPTH 92
           T+ + D Q  S+ +FDI  QTPLC  H
Sbjct: 484 TAKFADGQQCSVPVFDITHQTPLCEEH 510


>sp|Q09708|YAGG_SCHPO Uncharacterized protein C12G12.16c
           OS=Schizosaccharomyces pombe GN=SPAC12G12.16c PE=2 SV=1
          Length = 496

 Score = 30.0 bits (66), Expect = 6.0
 Identities = 22/71 (30%), Positives = 34/71 (47%), Gaps = 2/71 (2%)
 Frame = +2

Query: 245 YITSIILVLKC-TKIATNNWPLTIIHRLSKCFKHLSNRTSISMNEMMYRNSNPHHHSLLA 421
           YI   +   K  T + +NN   + IH + K F HLS+ T + + + + R  N     L A
Sbjct: 417 YIKKFLTAKKLFTDLPSNNELFSFIHNIPKEFLHLSDSTYLDLEKQVLRIFNVQIEELDA 476

Query: 422 -SPRHLHT*LE 451
            +P + H  LE
Sbjct: 477 KTPWYYHYELE 487


>sp|O29622|SYI_ARCFU Isoleucyl-tRNA synthetase OS=Archaeoglobus
           fulgidus GN=ileS PE=3 SV=1
          Length = 1018

 Score = 30.0 bits (66), Expect = 6.0
 Identities = 17/64 (26%), Positives = 29/64 (45%), Gaps = 2/64 (3%)
 Frame = -2

Query: 199 YGRLWQ--QPKLAKGVSQWILCHKAIQQQVLKEFHKSLWVGHKGVWATMSNIKIDTIWKS 26
           YG  W+   P + +   QW +    ++ ++L+E  K +W+     WA  +  K    W S
Sbjct: 388 YGHCWRCKTPIIYRATEQWFIKISELKDEMLEEIDKVMWIPE---WAGSARFK---DWVS 441

Query: 25  MYKD 14
             KD
Sbjct: 442 NAKD 445
tr_hit_id Q1DIU3
Definition tr|Q1DIU3|Q1DIU3_COCIM Putative uncharacterized protein OS=Coccidioides immitis
Align length 106
Score (bit) 41.6
E-value 0.021
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP911755|Adiantum capillus-veneris mRNA, clone:
YMU001_000008_G10.
         (494 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q1DIU3|Q1DIU3_COCIM Putative uncharacterized protein OS=Cocci...    42   0.021
tr|Q9LP90|Q9LP90_ARATH T32E20.30 OS=Arabidopsis thaliana PE=4 SV=1     41   0.035
tr|A6SHV6|A6SHV6_BOTFB Putative uncharacterized protein OS=Botry...    40   0.060
tr|A6RNZ8|A6RNZ8_BOTFB Putative uncharacterized protein OS=Botry...    40   0.060
tr|Q2QSH9|Q2QSH9_ORYSJ Retrotransposon protein, putative, unclas...    39   0.10 
tr|Q2QZI0|Q2QZI0_ORYSJ Retrotransposon protein, putative, unclas...    39   0.13 
tr|Q0IR25|Q0IR25_ORYSJ Os11g0686400 protein OS=Oryza sativa subs...    39   0.13 
tr|Q94GF8|Q94GF8_ORYSA Putative polyprotein, 5'-partial (Fragmen...    39   0.17 
tr|Q8SAX4|Q8SAX4_ORYSA Putative polyprotein OS=Oryza sativa GN=O...    39   0.17 
tr|Q10B80|Q10B80_ORYSJ Os03g0827200 protein OS=Oryza sativa subs...    39   0.17 
tr|Q0Q533|Q0Q533_9STRA Reverse transcriptase (Fragment) OS=Phyto...    38   0.23 
tr|Q7XPW2|Q7XPW2_ORYSJ OSJNBa0032F06.19 protein OS=Oryza sativa ...    38   0.30 
tr|Q259G0|Q259G0_ORYSA H0124B04.16 protein OS=Oryza sativa GN=H0...    38   0.30 
tr|A5BUN0|A5BUN0_VITVI Putative uncharacterized protein OS=Vitis...    38   0.30 
tr|B7F615|B7F615_ORYSJ cDNA clone:J013129I18, full insert sequen...    37   0.39 
tr|B4YF15|B4YF15_ANACO Polyprotein (Fragment) OS=Ananas comosus ...    37   0.39 
tr|A5BVZ5|A5BVZ5_VITVI Putative uncharacterized protein OS=Vitis...    37   0.39 
tr|Q9XZR7|Q9XZR7_DROBU Protease, reverse transcriptase, ribonucl...    37   0.39 
tr|B5DU21|B5DU21_DROPS GA23283 OS=Drosophila pseudoobscura pseud...    37   0.51 
tr|Q7XZZ8|Q7XZZ8_ORYSJ Putative polyprotein OS=Oryza sativa subs...    37   0.66 
tr|Q10F38|Q10F38_ORYSJ Retrotransposon protein, putative, unclas...    37   0.66 
tr|A5BI51|A5BI51_VITVI Putative uncharacterized protein OS=Vitis...    37   0.66 
tr|A5AXA1|A5AXA1_VITVI Putative uncharacterized protein OS=Vitis...    37   0.66 
tr|A5AJD0|A5AJD0_VITVI Putative uncharacterized protein OS=Vitis...    37   0.66 
tr|Q7XKR0|Q7XKR0_ORYSJ OSJNBa0053B21.11 protein OS=Oryza sativa ...    36   0.86 
tr|Q0D7Z1|Q0D7Z1_ORYSJ Os07g0195900 protein OS=Oryza sativa subs...    36   0.86 
tr|Q0D652|Q0D652_ORYSJ Os07g0510800 protein OS=Oryza sativa subs...    36   0.86 
tr|A5AP28|A5AP28_VITVI Putative uncharacterized protein OS=Vitis...    36   0.86 
tr|A5AD26|A5AD26_VITVI Putative uncharacterized protein OS=Vitis...    36   0.86 
tr|B4IVG4|B4IVG4_DROYA GE14852 OS=Drosophila yakuba GN=GE14852 P...    36   0.86 

>tr|Q1DIU3|Q1DIU3_COCIM Putative uncharacterized protein
           OS=Coccidioides immitis GN=CIMG_09770 PE=4 SV=1
          Length = 350

 Score = 41.6 bits (96), Expect = 0.021
 Identities = 33/106 (31%), Positives = 49/106 (46%), Gaps = 1/106 (0%)
 Frame = -2

Query: 325 ESMYDGEWPIIGRYLGTLENQDY*SDVEFKKI*KKAYGYFLNYGRLWQQPKLAKGVS-QW 149
           +S Y  E   I +YL TL         E+ +  KKA  Y +   +L++Q     GVS + 
Sbjct: 224 DSTYSEESEKIAQYLTTLSKPLGMEGKEYTRFQKKAIKYVMEANQLFRQA--GSGVSLRH 281

Query: 148 ILCHKAIQQQVLKEFHKSLWVGHKGVWATMSNIKIDTIWKSMYKDV 11
           ++ +K   +Q+L   H     GHK    T S ++    W  MYKDV
Sbjct: 282 VVDNKEQHKQILHMMHDKF--GHKEQEGTYSILQAQYWWSGMYKDV 325


>tr|Q9LP90|Q9LP90_ARATH T32E20.30 OS=Arabidopsis thaliana PE=4 SV=1
          Length = 1397

 Score = 40.8 bits (94), Expect = 0.035
 Identities = 23/70 (32%), Positives = 33/70 (47%)
 Frame = -2

Query: 211  YFLNYGRLWQQPKLAKGVSQWILCHKAIQQQVLKEFHKSLWVGHKGVWATMSNIKIDTIW 32
            Y +  GRLW++ +L        L        +L E+H  L  GH GV  TM  I+    W
Sbjct: 952  YTVKEGRLWKKQRLIIPKDSKFL------PLILAEYHSGLLGGHSGVLKTMKRIQQSFHW 1005

Query: 31   KSMYKDVVQF 2
            + M KD+ +F
Sbjct: 1006 EGMMKDIQKF 1015


>tr|A6SHV6|A6SHV6_BOTFB Putative uncharacterized protein
           OS=Botryotinia fuckeliana (strain B05.10) GN=BC1G_12337
           PE=4 SV=1
          Length = 1114

 Score = 40.0 bits (92), Expect = 0.060
 Identities = 27/105 (25%), Positives = 51/105 (48%)
 Frame = -2

Query: 316 YDGEWPIIGRYLGTLENQDY*SDVEFKKI*KKAYGYFLNYGRLWQQPKLAKGVSQWILCH 137
           Y+ E   I +YL +L+  +  +  EF K  K+A G+ +  G L++         + ++  
Sbjct: 610 YNSESRKIAQYLTSLQRPEGMTSQEFSKFKKRALGFSVREGCLYRNGT-RDTPHRKVIDE 668

Query: 136 KAIQQQVLKEFHKSLWVGHKGVWATMSNIKIDTIWKSMYKDVVQF 2
           +  +  ++   H++   GHKGV +T   +     W  MY+DV +F
Sbjct: 669 QQQRTSLIGNLHEAY--GHKGVESTFDKVHKLYYWNGMYEDVKRF 711


>tr|A6RNZ8|A6RNZ8_BOTFB Putative uncharacterized protein
           OS=Botryotinia fuckeliana (strain B05.10) GN=BC1G_02171
           PE=4 SV=1
          Length = 1114

 Score = 40.0 bits (92), Expect = 0.060
 Identities = 27/105 (25%), Positives = 51/105 (48%)
 Frame = -2

Query: 316 YDGEWPIIGRYLGTLENQDY*SDVEFKKI*KKAYGYFLNYGRLWQQPKLAKGVSQWILCH 137
           Y+ E   I +YL +L+  +  +  EF K  K+A G+ +  G L++         + ++  
Sbjct: 610 YNSESRKIAQYLTSLQRPEGMTSQEFSKFKKRALGFSVREGCLYRNGT-RDTPHRKVIDE 668

Query: 136 KAIQQQVLKEFHKSLWVGHKGVWATMSNIKIDTIWKSMYKDVVQF 2
           +  +  ++   H++   GHKGV +T   +     W  MY+DV +F
Sbjct: 669 QQQRTSLIGNLHEAY--GHKGVESTFDKVHKLYYWNGMYEDVKRF 711


>tr|Q2QSH9|Q2QSH9_ORYSJ Retrotransposon protein, putative,
            unclassified, expressed OS=Oryza sativa subsp. japonica
            GN=LOC_Os12g24050 PE=4 SV=1
          Length = 1548

 Score = 39.3 bits (90), Expect = 0.10
 Identities = 20/73 (27%), Positives = 37/73 (50%)
 Frame = -2

Query: 220  AYGYFLNYGRLWQQPKLAKGVSQWILCHKAIQQQVLKEFHKSLWVGHKGVWATMSNIKID 41
            A G+ L +G + ++ ++      W+  + A+  +++  FH S   GH GV AT   +K  
Sbjct: 1077 ASGFSLVHGLIKKKGRI------WLGANSALHTKIISSFHDSAIGGHSGVMATYHRVKKL 1130

Query: 40   TIWKSMYKDVVQF 2
             +WK +   V +F
Sbjct: 1131 FVWKGLKHSVEEF 1143


>tr|Q2QZI0|Q2QZI0_ORYSJ Retrotransposon protein, putative,
            unclassified OS=Oryza sativa subsp. japonica
            GN=LOC_Os11g45920 PE=4 SV=2
          Length = 2811

 Score = 38.9 bits (89), Expect = 0.13
 Identities = 18/50 (36%), Positives = 26/50 (52%)
 Frame = -2

Query: 151  WILCHKAIQQQVLKEFHKSLWVGHKGVWATMSNIKIDTIWKSMYKDVVQF 2
            WI  +K +QQ++L   H +   GH G+  T   +K    W  M KDV +F
Sbjct: 2334 WIGHNKLLQQKILANLHTAAVGGHSGILVTYQRVKQLFSWPGMRKDVQEF 2383


>tr|Q0IR25|Q0IR25_ORYSJ Os11g0686400 protein OS=Oryza sativa subsp.
            japonica GN=Os11g0686400 PE=4 SV=1
          Length = 2866

 Score = 38.9 bits (89), Expect = 0.13
 Identities = 18/50 (36%), Positives = 26/50 (52%)
 Frame = -2

Query: 151  WILCHKAIQQQVLKEFHKSLWVGHKGVWATMSNIKIDTIWKSMYKDVVQF 2
            WI  +K +QQ++L   H +   GH G+  T   +K    W  M KDV +F
Sbjct: 2389 WIGHNKLLQQKILANLHTAAVGGHSGILVTYQRVKQLFSWPGMRKDVQEF 2438


>tr|Q94GF8|Q94GF8_ORYSA Putative polyprotein, 5'-partial (Fragment)
           OS=Oryza sativa GN=OJ1111_B11.1 PE=4 SV=1
          Length = 799

 Score = 38.5 bits (88), Expect = 0.17
 Identities = 20/60 (33%), Positives = 28/60 (46%)
 Frame = -2

Query: 181 QPKLAKGVSQWILCHKAIQQQVLKEFHKSLWVGHKGVWATMSNIKIDTIWKSMYKDVVQF 2
           Q  + K    WI  + AIQ +++  F  S   GH GV AT   +K   +W  + K V  F
Sbjct: 667 QGLIKKNGRVWIGANSAIQTKIISAFRDSAVRGHSGVQATYQRVKKLFVWVGLKKSVTDF 726


>tr|Q8SAX4|Q8SAX4_ORYSA Putative polyprotein OS=Oryza sativa
            GN=OSJNBa0010E04.6 PE=4 SV=1
          Length = 1087

 Score = 38.5 bits (88), Expect = 0.17
 Identities = 20/60 (33%), Positives = 28/60 (46%)
 Frame = -2

Query: 181  QPKLAKGVSQWILCHKAIQQQVLKEFHKSLWVGHKGVWATMSNIKIDTIWKSMYKDVVQF 2
            Q  + K    WI  + AIQ +++  F  S   GH GV AT   +K   +W  + K V  F
Sbjct: 955  QGLIKKNGRVWIGANSAIQTKIISAFRDSAVRGHSGVQATYQRVKKLFVWVGLKKSVTDF 1014


>tr|Q10B80|Q10B80_ORYSJ Os03g0827200 protein OS=Oryza sativa subsp.
            japonica GN=Os03g0827200 PE=4 SV=1
          Length = 1087

 Score = 38.5 bits (88), Expect = 0.17
 Identities = 20/60 (33%), Positives = 28/60 (46%)
 Frame = -2

Query: 181  QPKLAKGVSQWILCHKAIQQQVLKEFHKSLWVGHKGVWATMSNIKIDTIWKSMYKDVVQF 2
            Q  + K    WI  + AIQ +++  F  S   GH GV AT   +K   +W  + K V  F
Sbjct: 955  QGLIKKNGRVWIGANSAIQTKIISAFRDSAVRGHSGVQATYQRVKKLFVWVGLKKSVTDF 1014