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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP911757
Clone id YMU001_000008_H01
Library
Length 161
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000008_H01.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
GTGGATCTGATGGGTGCATAAGATGCTGGGATGTAAGGCAGTTGCGAGAGCTTTATAGAA
TAACTGCAGGGCCAAGGAGGTGCCAGCAATGGGGCAAGTCTCTGCATATGGTCCATCCTA
ACTCTTTGGGATGGGACTATCGTGAGCGGAGACAGTTCTGG
■■Homology search results ■■ -
sp_hit_id O60161
Definition sp|O60161|UTP4_SCHPO U3 small nucleolar RNA-associated protein 4 OS=Schizosaccharomyces pombe
Align length 26
Score (bit) 31.2
E-value 1.7
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP911757|Adiantum capillus-veneris mRNA, clone:
YMU001_000008_H01.
         (161 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|O60161|UTP4_SCHPO U3 small nucleolar RNA-associated protein 4...    31   1.7  

>sp|O60161|UTP4_SCHPO U3 small nucleolar RNA-associated protein 4
           OS=Schizosaccharomyces pombe GN=utp4 PE=2 SV=1
          Length = 710

 Score = 31.2 bits (69), Expect = 1.7
 Identities = 14/26 (53%), Positives = 18/26 (69%)
 Frame = +1

Query: 82  ASNGASLCIWSILTLWDGTIVSGDSS 159
           A  G +  IW++ +L DGTIVS DSS
Sbjct: 200 ARKGEAALIWAVKSLRDGTIVSADSS 225
tr_hit_id A9RP39
Definition tr|A9RP39|A9RP39_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
Align length 23
Score (bit) 47.0
E-value 2.0e-10
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP911757|Adiantum capillus-veneris mRNA, clone:
YMU001_000008_H01.
         (161 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9RP39|A9RP39_PHYPA Predicted protein OS=Physcomitrella paten...    47   2e-10
tr|A9SEW6|A9SEW6_PHYPA Predicted protein OS=Physcomitrella paten...    47   6e-10
tr|Q0DNT9|Q0DNT9_ORYSJ Os03g0735100 protein OS=Oryza sativa subs...    43   2e-07
tr|Q6AVS3|Q6AVS3_ORYSJ Expressed protein (Retrotransposon, putat...    43   2e-07
tr|A3AMF7|A3AMF7_ORYSJ Putative uncharacterized protein OS=Oryza...    43   2e-07
tr|B8AR32|B8AR32_ORYSI Putative uncharacterized protein OS=Oryza...    43   2e-07
tr|B7F947|B7F947_ORYSJ cDNA, clone: J075009F20, full insert sequ...    43   2e-07
tr|Q8VYS4|Q8VYS4_ARATH Putative uncharacterized protein At1g2747...    42   2e-07
tr|A7NUA5|A7NUA5_VITVI Chromosome chr18 scaffold_1, whole genome...    41   3e-07
tr|A5AIR8|A5AIR8_VITVI Putative uncharacterized protein OS=Vitis...    41   3e-07
tr|Q9S9X3|Q9S9X3_ARATH AT4g07410 protein OS=Arabidopsis thaliana...    37   0.38 
tr|Q8RXU6|Q8RXU6_ARATH Putative uncharacterized protein At4g0741...    37   0.38 
tr|A9T8X6|A9T8X6_PHYPA Predicted protein OS=Physcomitrella paten...    37   0.38 
tr|A8MRY7|A8MRY7_ARATH Uncharacterized protein At4g07410.2 OS=Ar...    37   0.38 
tr|Q4WHW8|Q4WHW8_ASPFU Small nucleolar ribonucleoprotein complex...    35   1.9  
tr|B0XUR5|B0XUR5_ASPFC Small nucleolar ribonucleoprotein complex...    35   1.9  
tr|A2QP88|A2QP88_ASPNC Similarity to protein SEQ ID NO:7145 from...    35   1.9  
tr|A1DFH3|A1DFH3_NEOFI Small nucleolar ribonucleoprotein complex...    35   1.9  
tr|Q6P125|Q6P125_DANRE Cirrhosis, autosomal recessive 1A (Cirhin...    35   2.4  
tr|Q5B6N6|Q5B6N6_EMENI Putative uncharacterized protein OS=Emeri...    34   3.2  
tr|Q8PIQ5|Q8PIQ5_XANAC Putative uncharacterized protein XAC2840 ...    34   4.2  
tr|Q3BR83|Q3BR83_XANC5 Putative secreted protein OS=Xanthomonas ...    34   4.2  
tr|B2SSC8|B2SSC8_XANOP Cupin domain OS=Xanthomonas oryzae pv. or...    34   4.2  
tr|Q0CRN4|Q0CRN4_ASPTN Putative uncharacterized protein OS=Asper...    34   4.2  
tr|Q9FZI9|Q9FZI9_ARATH F17L21.26 OS=Arabidopsis thaliana PE=4 SV=1     33   5.4  
tr|Q2UPT3|Q2UPT3_ASPOR WD40 repeat protein OS=Aspergillus oryzae...    33   5.4  
tr|B8N0B2|B8N0B2_ASPFL Small nucleolar ribonucleoprotein complex...    33   5.4  
tr|B6HBV8|B6HBV8_PENCH Pc18g04860 protein OS=Penicillium chrysog...    33   5.4  
tr|A1CER5|A1CER5_ASPCL Small nucleolar ribonucleoprotein complex...    33   5.4  
tr|Q8P7D4|Q8P7D4_XANCP Putative uncharacterized protein XCC2677 ...    33   7.1  

>tr|A9RP39|A9RP39_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_204439 PE=4 SV=1
          Length = 821

 Score = 47.0 bits (110), Expect(2) = 2e-10
 Identities = 18/23 (78%), Positives = 20/23 (86%)
 Frame = +3

Query: 3   GSDGCIRCWDVRQLRELYRITAG 71
           GSDGCIRCWD+   RE+YRITAG
Sbjct: 217 GSDGCIRCWDIANTREIYRITAG 239



 Score = 41.2 bits (95), Expect(2) = 2e-10
 Identities = 19/30 (63%), Positives = 22/30 (73%)
 Frame = +1

Query: 70  GQGGASNGASLCIWSILTLWDGTIVSGDSS 159
           G GG  + A LCIWS+L L +G IVSGDSS
Sbjct: 239 GVGGKRSDADLCIWSLLVLRNGDIVSGDSS 268


>tr|A9SEW6|A9SEW6_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_128570 PE=4 SV=1
          Length = 822

 Score = 47.0 bits (110), Expect(2) = 6e-10
 Identities = 18/23 (78%), Positives = 20/23 (86%)
 Frame = +3

Query: 3   GSDGCIRCWDVRQLRELYRITAG 71
           GSDGCIRCWD+   RE+YRITAG
Sbjct: 217 GSDGCIRCWDIANTREIYRITAG 239



 Score = 39.7 bits (91), Expect(2) = 6e-10
 Identities = 18/30 (60%), Positives = 21/30 (70%)
 Frame = +1

Query: 70  GQGGASNGASLCIWSILTLWDGTIVSGDSS 159
           G GG    + LCIWS+L L +G IVSGDSS
Sbjct: 239 GIGGKGRDSDLCIWSLLVLRNGDIVSGDSS 268


>tr|Q0DNT9|Q0DNT9_ORYSJ Os03g0735100 protein OS=Oryza sativa subsp.
           japonica GN=Os03g0735100 PE=4 SV=1
          Length = 1001

 Score = 43.1 bits (100), Expect(2) = 2e-07
 Identities = 20/30 (66%), Positives = 23/30 (76%)
 Frame = +1

Query: 70  GQGGASNGASLCIWSILTLWDGTIVSGDSS 159
           G GGA +G  LCIWS+L L  GT+VSGDSS
Sbjct: 423 GLGGAGSGNELCIWSLLFLRCGTLVSGDSS 452



 Score = 35.0 bits (79), Expect(2) = 2e-07
 Identities = 15/22 (68%), Positives = 15/22 (68%)
 Frame = +3

Query: 6   SDGCIRCWDVRQLRELYRITAG 71
           SDG IRCWD     E YRITAG
Sbjct: 402 SDGLIRCWDSTSFYEKYRITAG 423


>tr|Q6AVS3|Q6AVS3_ORYSJ Expressed protein (Retrotransposon,
           putative, centromere-specific, expressed) OS=Oryza
           sativa subsp. japonica GN=OSJNBa0027J18.7 PE=4 SV=1
          Length = 982

 Score = 43.1 bits (100), Expect(2) = 2e-07
 Identities = 20/30 (66%), Positives = 23/30 (76%)
 Frame = +1

Query: 70  GQGGASNGASLCIWSILTLWDGTIVSGDSS 159
           G GGA +G  LCIWS+L L  GT+VSGDSS
Sbjct: 423 GLGGAGSGNELCIWSLLFLRCGTLVSGDSS 452



 Score = 35.0 bits (79), Expect(2) = 2e-07
 Identities = 15/22 (68%), Positives = 15/22 (68%)
 Frame = +3

Query: 6   SDGCIRCWDVRQLRELYRITAG 71
           SDG IRCWD     E YRITAG
Sbjct: 402 SDGLIRCWDSTSFYEKYRITAG 423


>tr|A3AMF7|A3AMF7_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_011979 PE=4 SV=1
          Length = 826

 Score = 43.1 bits (100), Expect(2) = 2e-07
 Identities = 20/30 (66%), Positives = 23/30 (76%)
 Frame = +1

Query: 70  GQGGASNGASLCIWSILTLWDGTIVSGDSS 159
           G GGA +G  LCIWS+L L  GT+VSGDSS
Sbjct: 248 GLGGAGSGNELCIWSLLFLRCGTLVSGDSS 277



 Score = 35.0 bits (79), Expect(2) = 2e-07
 Identities = 15/22 (68%), Positives = 15/22 (68%)
 Frame = +3

Query: 6   SDGCIRCWDVRQLRELYRITAG 71
           SDG IRCWD     E YRITAG
Sbjct: 227 SDGLIRCWDSTSFYEKYRITAG 248


>tr|B8AR32|B8AR32_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_13420 PE=4 SV=1
          Length = 807

 Score = 43.1 bits (100), Expect(2) = 2e-07
 Identities = 20/30 (66%), Positives = 23/30 (76%)
 Frame = +1

Query: 70  GQGGASNGASLCIWSILTLWDGTIVSGDSS 159
           G GGA +G  LCIWS+L L  GT+VSGDSS
Sbjct: 248 GLGGAGSGNELCIWSLLFLRCGTLVSGDSS 277



 Score = 35.0 bits (79), Expect(2) = 2e-07
 Identities = 15/22 (68%), Positives = 15/22 (68%)
 Frame = +3

Query: 6   SDGCIRCWDVRQLRELYRITAG 71
           SDG IRCWD     E YRITAG
Sbjct: 227 SDGLIRCWDSTSFYEKYRITAG 248


>tr|B7F947|B7F947_ORYSJ cDNA, clone: J075009F20, full insert
           sequence OS=Oryza sativa subsp. japonica PE=2 SV=1
          Length = 807

 Score = 43.1 bits (100), Expect(2) = 2e-07
 Identities = 20/30 (66%), Positives = 23/30 (76%)
 Frame = +1

Query: 70  GQGGASNGASLCIWSILTLWDGTIVSGDSS 159
           G GGA +G  LCIWS+L L  GT+VSGDSS
Sbjct: 248 GLGGAGSGNELCIWSLLFLRCGTLVSGDSS 277



 Score = 35.0 bits (79), Expect(2) = 2e-07
 Identities = 15/22 (68%), Positives = 15/22 (68%)
 Frame = +3

Query: 6   SDGCIRCWDVRQLRELYRITAG 71
           SDG IRCWD     E YRITAG
Sbjct: 227 SDGLIRCWDSTSFYEKYRITAG 248


>tr|Q8VYS4|Q8VYS4_ARATH Putative uncharacterized protein At1g27470
           OS=Arabidopsis thaliana GN=At1g27470 PE=2 SV=1
          Length = 810

 Score = 42.4 bits (98), Expect(2) = 2e-07
 Identities = 18/30 (60%), Positives = 23/30 (76%)
 Frame = +1

Query: 70  GQGGASNGASLCIWSILTLWDGTIVSGDSS 159
           G GG  NG+ LCIWS+L+L  G +VSGDS+
Sbjct: 239 GLGGLGNGSELCIWSLLSLRYGVLVSGDST 268



 Score = 35.4 bits (80), Expect(2) = 2e-07
 Identities = 14/22 (63%), Positives = 15/22 (68%)
 Frame = +3

Query: 6   SDGCIRCWDVRQLRELYRITAG 71
           SDG IRCWD     E+YRIT G
Sbjct: 218 SDGLIRCWDANLCHEVYRITVG 239


>tr|A7NUA5|A7NUA5_VITVI Chromosome chr18 scaffold_1, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00014974001
           PE=4 SV=1
          Length = 798

 Score = 41.2 bits (95), Expect(2) = 3e-07
 Identities = 18/30 (60%), Positives = 22/30 (73%)
 Frame = +1

Query: 70  GQGGASNGASLCIWSILTLWDGTIVSGDSS 159
           G GG  +G  LCIWS+L L  GT+VSGDS+
Sbjct: 245 GLGGLGSGPELCIWSLLALRCGTLVSGDSN 274



 Score = 36.2 bits (82), Expect(2) = 3e-07
 Identities = 14/22 (63%), Positives = 16/22 (72%)
 Frame = +3

Query: 6   SDGCIRCWDVRQLRELYRITAG 71
           SDG IRCWD +   E+YRIT G
Sbjct: 224 SDGFIRCWDAKLAHEIYRITVG 245


>tr|A5AIR8|A5AIR8_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_004319 PE=4 SV=1
          Length = 792

 Score = 41.2 bits (95), Expect(2) = 3e-07
 Identities = 18/30 (60%), Positives = 22/30 (73%)
 Frame = +1

Query: 70  GQGGASNGASLCIWSILTLWDGTIVSGDSS 159
           G GG  +G  LCIWS+L L  GT+VSGDS+
Sbjct: 245 GLGGLGSGPELCIWSLLALRCGTLVSGDSN 274



 Score = 36.2 bits (82), Expect(2) = 3e-07
 Identities = 14/22 (63%), Positives = 16/22 (72%)
 Frame = +3

Query: 6   SDGCIRCWDVRQLRELYRITAG 71
           SDG IRCWD +   E+YRIT G
Sbjct: 224 SDGFIRCWDAKLAHEIYRITVG 245