NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | ダウンロード | 利用許諾 | ヘルプ
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP911758
Clone id YMU001_000008_H02
Library
Length 356
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000008_H02.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
TTGGAAACAACTGCTGCAAAAATCCTCTCTCGCTAACAAGATTATCCTGGCAGTGCCAGC
TTCGCTTGTTACCTTCTTTGGGATTGAGATTGGGGTTTGCCTCCAAACTTTTTTGCAATG
CCACTGCCAAAAACCTATGCAAAGGAATATGGAAAGAAACTTCCTGCTGAGAGACGTCAA
AGTCAACCTCTAACCATTCCCTTTCACTTCGCACAAATTCAGCATTGACACCTGAGCCTG
GTAGTGCTGCACCCATCCACCATTCTGTTGATTTTTCCTGACCATTCTTACCCTCTTGCA
CCTTCACGTGTGATGAAATACCACCTAGCTCAAGATTTTCATGCACTGAGCTAACC
■■Homology search results ■■ -
sp_hit_id Q5U430
Definition sp|Q5U430|UBR3_MOUSE E3 ubiquitin-protein ligase UBR3 OS=Mus musculus
Align length 77
Score (bit) 30.8
E-value 2.2
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP911758|Adiantum capillus-veneris mRNA, clone:
YMU001_000008_H02.
         (356 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q5U430|UBR3_MOUSE E3 ubiquitin-protein ligase UBR3 OS=Mus mus...    31   2.2  
sp|Q6ZT12|UBR3_HUMAN E3 ubiquitin-protein ligase UBR3 OS=Homo sa...    31   2.2  
sp|Q8TVG5|SYV_METKA Valyl-tRNA synthetase OS=Methanopyrus kandle...    31   2.2  
sp|Q9HE16|YI35_SCHPO Uncharacterized transcriptional regulatory ...    30   5.0  
sp|Q20176|NAS39_CAEEL Zinc metalloproteinase nas-39 OS=Caenorhab...    30   5.0  
sp|Q0VD50|NMNA1_BOVIN Nicotinamide mononucleotide adenylyltransf...    29   6.5  
sp|Q68772|RPOA_SHFV Replicase polyprotein 1ab OS=Simian hemorrha...    29   8.5  
sp|Q4WEH7|PRP45_ASPFU Pre-mRNA-processing protein 45 OS=Aspergil...    29   8.5  
sp|Q6W8W3|POL2_RRVC RNA2 polyprotein OS=Raspberry ringspot virus...    29   8.5  
sp|Q3U564|DCP1B_MOUSE mRNA-decapping enzyme 1B OS=Mus musculus G...    29   8.5  

>sp|Q5U430|UBR3_MOUSE E3 ubiquitin-protein ligase UBR3 OS=Mus
           musculus GN=Ubr3 PE=1 SV=3
          Length = 1889

 Score = 30.8 bits (68), Expect = 2.2
 Identities = 19/77 (24%), Positives = 39/77 (50%), Gaps = 3/77 (3%)
 Frame = -2

Query: 322 GISSHVKVQEGKNGQEKSTEWWMGAALPGSGVNAEFVRSEREWLE-VDF--DVSQQEVSF 152
           G+ SH KV+E +        + + A               ++W + ++F  + +  +V+F
Sbjct: 585 GLLSHCKVRETQEYTRNVVRYCLEAL--------------QDWFDAINFVDEPAPNQVTF 630

Query: 151 HIPLHRFLAVALQKSLE 101
           H+PLHR+ A+ L K+++
Sbjct: 631 HLPLHRYYAMFLSKAVK 647


>sp|Q6ZT12|UBR3_HUMAN E3 ubiquitin-protein ligase UBR3 OS=Homo
           sapiens GN=UBR3 PE=2 SV=2
          Length = 1888

 Score = 30.8 bits (68), Expect = 2.2
 Identities = 19/77 (24%), Positives = 39/77 (50%), Gaps = 3/77 (3%)
 Frame = -2

Query: 322 GISSHVKVQEGKNGQEKSTEWWMGAALPGSGVNAEFVRSEREWLE-VDF--DVSQQEVSF 152
           G+ SH KV+E +        + + A               ++W + ++F  + +  +V+F
Sbjct: 585 GLLSHCKVRETQEYTRNVVRYCLEAL--------------QDWFDAINFVDEPAPNQVTF 630

Query: 151 HIPLHRFLAVALQKSLE 101
           H+PLHR+ A+ L K+++
Sbjct: 631 HLPLHRYYAMFLSKAVK 647


>sp|Q8TVG5|SYV_METKA Valyl-tRNA synthetase OS=Methanopyrus kandleri
           GN=valS PE=3 SV=1
          Length = 914

 Score = 30.8 bits (68), Expect = 2.2
 Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
 Frame = +1

Query: 82  D*DWGLP-PNFFAMPLPKTYAKEYGKKLPAERRQ 180
           D DW +     FA P+P  Y KE G+ +PAE+ Q
Sbjct: 418 DWDWCISRQRIFATPIPVWYCKECGEVIPAEKDQ 451


>sp|Q9HE16|YI35_SCHPO Uncharacterized transcriptional regulatory
           protein C1399.05c OS=Schizosaccharomyces pombe
           GN=SPAC1399.05c PE=2 SV=1
          Length = 529

 Score = 29.6 bits (65), Expect = 5.0
 Identities = 15/45 (33%), Positives = 21/45 (46%)
 Frame = -2

Query: 211 RSEREWLEVDFDVSQQEVSFHIPLHRFLAVALQKSLEANPNLNPK 77
           R  + WL VD+  SQ     +   H  LA A   +L  NP+L  +
Sbjct: 138 RYGKRWLSVDYSASQYMELLYTKSHLMLATACLIALRHNPSLKAR 182


>sp|Q20176|NAS39_CAEEL Zinc metalloproteinase nas-39
           OS=Caenorhabditis elegans GN=nas-39 PE=2 SV=3
          Length = 951

 Score = 29.6 bits (65), Expect = 5.0
 Identities = 13/37 (35%), Positives = 18/37 (48%)
 Frame = -2

Query: 325 GGISSHVKVQEGKNGQEKSTEWWMGAALPGSGVNAEF 215
           G I SH    + K G+ +   W + A  PG GV  +F
Sbjct: 816 GHIYSHATFSDSKYGKNQDCSWIVRAKSPGRGVRIQF 852


>sp|Q0VD50|NMNA1_BOVIN Nicotinamide mononucleotide
           adenylyltransferase 1 OS=Bos taurus GN=NMNAT1 PE=2 SV=1
          Length = 281

 Score = 29.3 bits (64), Expect = 6.5
 Identities = 22/77 (28%), Positives = 37/77 (48%), Gaps = 4/77 (5%)
 Frame = -2

Query: 229 VNAEFVRSEREWLEVD-FDVSQQEVSFHIPLHRFLAVALQKSL---EANPNLNPKEGNKR 62
           + AE      +W+EVD ++  Q+E +    + R     L+ S+   + N  +  K G KR
Sbjct: 68  IMAELATKNSKWVEVDTWESLQKEWTETAKVLRHHQEKLEASICDPQQNSPVLEKPGRKR 127

Query: 61  SWHCQDNLVSERGFLQQ 11
            W  Q   +SE+  L+Q
Sbjct: 128 KWAEQKQDISEKKSLEQ 144


>sp|Q68772|RPOA_SHFV Replicase polyprotein 1ab OS=Simian hemorrhagic
            fever virus GN=rep PE=2 SV=3
          Length = 3596

 Score = 28.9 bits (63), Expect = 8.5
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = -3

Query: 231  VSMLNLCEVKGNG*RLTLTSLSRKFLSIFLCIGFW 127
            V  L  C V G G R+  T+L+  ++  F+C G+W
Sbjct: 1225 VMRLRACRVVGGG-RIFRTALAAAWVLFFVCAGYW 1258


>sp|Q4WEH7|PRP45_ASPFU Pre-mRNA-processing protein 45 OS=Aspergillus
           fumigatus GN=prp45 PE=3 SV=1
          Length = 579

 Score = 28.9 bits (63), Expect = 8.5
 Identities = 16/42 (38%), Positives = 20/42 (47%)
 Frame = +1

Query: 91  WGLPPNFFAMPLPKTYAKEYGKKLPAERRQSQPLTIPFHFAQ 216
           W +PP       PK Y     K+L A+ R  Q +TI   FAQ
Sbjct: 259 WRIPPPVSNWKNPKGYTVPLDKRLAADGRGLQDVTINDKFAQ 300


>sp|Q6W8W3|POL2_RRVC RNA2 polyprotein OS=Raspberry ringspot virus
           (strain cherry) PE=3 SV=1
          Length = 1106

 Score = 28.9 bits (63), Expect = 8.5
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = +2

Query: 2   WKQLLQKSSLANKIILAVPASLVTFFGIEIGVCLQTF 112
           W+Q ++   L  KI + + A+   F GI +G CL  +
Sbjct: 636 WRQWVRDGCLKPKIKMRITAATSCFSGIVLGACLDAY 672


>sp|Q3U564|DCP1B_MOUSE mRNA-decapping enzyme 1B OS=Mus musculus
           GN=Dcp1b PE=2 SV=1
          Length = 578

 Score = 28.9 bits (63), Expect = 8.5
 Identities = 12/42 (28%), Positives = 21/42 (50%)
 Frame = -2

Query: 148 IPLHRFLAVALQKSLEANPNLNPKEGNKRSWHCQDNLVSERG 23
           +P+ + L  A+QK +  +P L+P   +   W C+    S  G
Sbjct: 283 LPVEKQLCPAIQKLMLGSPGLHPLPQHPEQWSCKSGSPSPAG 324
tr_hit_id A9SDB1
Definition tr|A9SDB1|A9SDB1_PHYPA Predicted protein (Fragment) OS=Physcomitrella patens subsp. patens
Align length 99
Score (bit) 70.5
E-value 4.0e-11
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP911758|Adiantum capillus-veneris mRNA, clone:
YMU001_000008_H02.
         (356 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9SDB1|A9SDB1_PHYPA Predicted protein (Fragment) OS=Physcomit...    70   4e-11
tr|A9TX84|A9TX84_PHYPA Predicted protein OS=Physcomitrella paten...    62   1e-08
tr|A9RY58|A9RY58_PHYPA Predicted protein OS=Physcomitrella paten...    59   1e-07
tr|A9SMY6|A9SMY6_PHYPA Predicted protein (Fragment) OS=Physcomit...    54   4e-06
tr|A7PNM8|A7PNM8_VITVI Chromosome chr8 scaffold_23, whole genome...    44   0.003
tr|Q0JQP7|Q0JQP7_ORYSJ Os01g0148000 protein OS=Oryza sativa subs...    44   0.005
tr|B8AD94|B8AD94_ORYSI Putative uncharacterized protein OS=Oryza...    44   0.005
tr|A2ZP89|A2ZP89_ORYSJ Putative uncharacterized protein OS=Oryza...    44   0.005
tr|Q9LZ95|Q9LZ95_ARATH Ubiquitin-protein ligase E3-alpha-like pr...    42   0.016
tr|Q1DUK2|Q1DUK2_COCIM Putative uncharacterized protein OS=Cocci...    37   0.38 
tr|A4RWS7|A4RWS7_OSTLU Predicted protein OS=Ostreococcus lucimar...    34   3.2  
tr|B4LU74|B4LU74_DROVI GJ17258 OS=Drosophila virilis GN=GJ17258 ...    34   3.2  
tr|A6DB68|A6DB68_9PROT Putative uncharacterized protein OS=Camin...    33   5.5  
tr|B6QBQ4|B6QBQ4_PENMA Putative uncharacterized protein OS=Penic...    33   7.2  

>tr|A9SDB1|A9SDB1_PHYPA Predicted protein (Fragment)
           OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_127907 PE=4 SV=1
          Length = 2015

 Score = 70.5 bits (171), Expect = 4e-11
 Identities = 42/99 (42%), Positives = 55/99 (55%), Gaps = 2/99 (2%)
 Frame = -2

Query: 292 GKNGQEKSTEWWMGA-ALPGSGVNAEFVRSEREWLEVDFDVSQQEVSFHIPLHRFLAVAL 116
           G+    ++ EWWMG   L  S +  + V  + EW  VDFDVS+Q+VSFHIPLHR LA+ L
Sbjct: 641 GEGFDNRAAEWWMGPEGLTTSNILDQSVEVD-EWPLVDFDVSRQDVSFHIPLHRMLALLL 699

Query: 115 QKSLEANPNLNPKEGNKRSWHCQDNLVSE-RGFLQQLFP 2
            K+LE +     K   K      D    E R FL+Q+ P
Sbjct: 700 HKALEFHSAKQDKSFGKEKILSSDGTSGEWRSFLEQVLP 738


>tr|A9TX84|A9TX84_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_152183 PE=4 SV=1
          Length = 2048

 Score = 62.4 bits (150), Expect = 1e-08
 Identities = 31/74 (41%), Positives = 45/74 (60%)
 Frame = -2

Query: 322 GISSHVKVQEGKNGQEKSTEWWMGAALPGSGVNAEFVRSEREWLEVDFDVSQQEVSFHIP 143
           G +S ++V +     +   +WWMG     S    + V  + EW  ++FDVS+Q+VSFHIP
Sbjct: 635 GTNSGIQVSD----MDVEIQWWMGPEASTSSTIGQLVEDD-EWPTIEFDVSRQDVSFHIP 689

Query: 142 LHRFLAVALQKSLE 101
           LHR LA+ L K+LE
Sbjct: 690 LHRMLALLLHKTLE 703


>tr|A9RY58|A9RY58_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_161713 PE=4 SV=1
          Length = 2612

 Score = 58.9 bits (141), Expect = 1e-07
 Identities = 30/56 (53%), Positives = 35/56 (62%)
 Frame = -2

Query: 268 TEWWMGAALPGSGVNAEFVRSEREWLEVDFDVSQQEVSFHIPLHRFLAVALQKSLE 101
           TEWWMG+        A       EW  VDFDVS+QEVSFHIPLHR L + L K+L+
Sbjct: 678 TEWWMGSEPVHLAPTANC--EVDEWAVVDFDVSRQEVSFHIPLHRMLGLLLHKALD 731


>tr|A9SMY6|A9SMY6_PHYPA Predicted protein (Fragment)
           OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_132476 PE=4 SV=1
          Length = 1995

 Score = 53.9 bits (128), Expect = 4e-06
 Identities = 23/38 (60%), Positives = 30/38 (78%)
 Frame = -2

Query: 214 VRSEREWLEVDFDVSQQEVSFHIPLHRFLAVALQKSLE 101
           V  + EW+ +DFDVS+QEVSFHIPLHR L + L K+L+
Sbjct: 657 VYKDEEWVFIDFDVSRQEVSFHIPLHRMLGLLLHKALD 694


>tr|A7PNM8|A7PNM8_VITVI Chromosome chr8 scaffold_23, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00021321001
           PE=4 SV=1
          Length = 1953

 Score = 44.3 bits (103), Expect = 0.003
 Identities = 19/37 (51%), Positives = 28/37 (75%)
 Frame = -2

Query: 214 VRSEREWLEVDFDVSQQEVSFHIPLHRFLAVALQKSL 104
           V S  +W ++ +DVS Q++S HIPLHR L++ LQK+L
Sbjct: 579 VLSLSDWPDILYDVSSQDISVHIPLHRLLSLLLQKAL 615


>tr|Q0JQP7|Q0JQP7_ORYSJ Os01g0148000 protein OS=Oryza sativa subsp.
           japonica GN=Os01g0148000 PE=4 SV=1
          Length = 1980

 Score = 43.5 bits (101), Expect = 0.005
 Identities = 19/31 (61%), Positives = 23/31 (74%)
 Frame = -2

Query: 196 WLEVDFDVSQQEVSFHIPLHRFLAVALQKSL 104
           W  V FDVS QE SFHIPLHR L+  L+K++
Sbjct: 695 WPHVVFDVSSQETSFHIPLHRMLSFLLRKAM 725


>tr|B8AD94|B8AD94_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_00390 PE=4 SV=1
          Length = 1949

 Score = 43.5 bits (101), Expect = 0.005
 Identities = 19/31 (61%), Positives = 23/31 (74%)
 Frame = -2

Query: 196 WLEVDFDVSQQEVSFHIPLHRFLAVALQKSL 104
           W  V FDVS QE SFHIPLHR L+  L+K++
Sbjct: 695 WPHVVFDVSSQETSFHIPLHRMLSFLLRKAM 725


>tr|A2ZP89|A2ZP89_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_000361 PE=4 SV=1
          Length = 1906

 Score = 43.5 bits (101), Expect = 0.005
 Identities = 19/31 (61%), Positives = 23/31 (74%)
 Frame = -2

Query: 196 WLEVDFDVSQQEVSFHIPLHRFLAVALQKSL 104
           W  V FDVS QE SFHIPLHR L+  L+K++
Sbjct: 695 WPHVVFDVSSQETSFHIPLHRMLSFLLRKAM 725


>tr|Q9LZ95|Q9LZ95_ARATH Ubiquitin-protein ligase E3-alpha-like
           protein OS=Arabidopsis thaliana GN=T1E22_60 PE=4 SV=1
          Length = 1225

 Score = 42.0 bits (97), Expect = 0.016
 Identities = 15/32 (46%), Positives = 25/32 (78%)
 Frame = -2

Query: 199 EWLEVDFDVSQQEVSFHIPLHRFLAVALQKSL 104
           +W ++ +DVS Q +S H+PLHR L++ +QK+L
Sbjct: 681 DWPDIHYDVSSQAISVHLPLHRLLSLLIQKAL 712


>tr|Q1DUK2|Q1DUK2_COCIM Putative uncharacterized protein
           OS=Coccidioides immitis GN=CIMG_06011 PE=4 SV=1
          Length = 308

 Score = 37.4 bits (85), Expect = 0.38
 Identities = 21/66 (31%), Positives = 30/66 (45%)
 Frame = +1

Query: 130 KTYAKEYGKKLPAERRQSQPLTIPFHFAQIQH*HLSLVVLHPSTILLIFPDHSYPLAPSR 309
           K  A E  +  P    +S+PL +  H  Q +H HL   V  P  I   FP H  P++ S 
Sbjct: 7   KDSAPEPSELAPTFAIESEPLALASHLPQRKHVHLDASVQSPELIRCAFPPHRKPVSFST 66

Query: 310 VMKYHL 327
             +Y +
Sbjct: 67  YEEYEI 72