BP911766
Clone id YMU001_000008_H11
Library
Length 497
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000008_H11.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence
TTTTTTTTTTTTGGGCTGTCAAACCTACGAGGCCACATTTAAAGAGATAGTAAACATTTT
ACATCTGACACTCTATGTGCGGTACCAAATCTAAATAAACACAGTCAAAGGTTACTCAAG
TACAATAATAAGTCCTGCAGCAACATCGTAGCTGGGATGAAGGAAGACCCTTTATAACCT
GTAAATATAAGTCGTCTAGATGGTGACTTATAGAGATGAACTGTTTGTTGCATACCTTCC
TTAAAGAAGTTGAACCCCGCTCTTTCCTAGCTGAGGCGGTAAAAACACTCTCACTTCCCT
TTCTTCGGAAAAATGCAGGTGCTTCGGGACCATAATCTCCAGACCTGCCATTTCCTCCAC
ATAGAATGCCTGCAACTCTGCATTATCTGGGATCCTTGTCGCCAATGGAATCTCTCGAAC
GAAGTCCCCTTCAGGGCAGTGCTCCGGAGTTGCGTCTGTGAGCTTGAATGTCCTCTCACC
TCTTGTGAGCACTGGGG
■■Homology search results ■■ -
sp_hit_id Q8K9P7
Definition sp|Q8K9P7|TOP1_BUCAP DNA topoisomerase 1 OS=Buchnera aphidicola subsp. Schizaphis graminum
Align length 31
Score (bit) 29.6
E-value 7.5
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP911766|Adiantum capillus-veneris mRNA, clone:
YMU001_000008_H11.
(485 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q8K9P7|TOP1_BUCAP DNA topoisomerase 1 OS=Buchnera aphidicola ... 30 7.5
sp|O35973|PER1_MOUSE Period circadian protein homolog 1 OS=Mus m... 29 9.8
sp|P07359|GP1BA_HUMAN Platelet glycoprotein Ib alpha chain OS=Ho... 29 9.8
sp|Q01330|CRTX_ESCVU Zeaxanthin glucosyltransferase OS=Escherich... 29 9.8

>sp|Q8K9P7|TOP1_BUCAP DNA topoisomerase 1 OS=Buchnera aphidicola
subsp. Schizaphis graminum GN=topA PE=3 SV=1
Length = 853

Score = 29.6 bits (65), Expect = 7.5
Identities = 12/31 (38%), Positives = 20/31 (64%)
Frame = -3

Query: 390 ATRIPDNAELQAFYVEEMAGLEIMVPKHLHF 298
A P + E ++ +VEE+A E ++PK LH+
Sbjct: 771 ANTFPKSRETRSPFVEELARFEYLLPKKLHY 801


>sp|O35973|PER1_MOUSE Period circadian protein homolog 1 OS=Mus
musculus GN=Per1 PE=1 SV=1
Length = 1291

Score = 29.3 bits (64), Expect = 9.8
Identities = 16/39 (41%), Positives = 19/39 (48%)
Frame = -2

Query: 349 CGGNGRSGDYGPEAPAFFRRKGSESVFTASARKERGSTS 233
CG G GD G EA KGS S +A +E+G S
Sbjct: 1240 CGVGGGGGDGGEEAQTQIGAKGSSSQDSAMEEEEQGGGS 1278


>sp|P07359|GP1BA_HUMAN Platelet glycoprotein Ib alpha chain OS=Homo
sapiens GN=GP1BA PE=1 SV=1
Length = 626

Score = 29.3 bits (64), Expect = 9.8
Identities = 22/67 (32%), Positives = 28/67 (41%), Gaps = 5/67 (7%)
Frame = -3

Query: 450 LTDATPEHCPEGDFVREIPLATRIPDNAELQ---AFYVEEMAGLEIMVPKHLHFSEE--R 286
L D PE EGD VR + P A FY A L+ +P LH ++E +
Sbjct: 291 LYDYYPEEDTEGDKVRATRTVVKFPTKAHTTPWGLFYSWSTASLDSQMPSSLHPTQESTK 350

Query: 285 EVRVFLP 265
E F P
Sbjct: 351 EQTTFPP 357


>sp|Q01330|CRTX_ESCVU Zeaxanthin glucosyltransferase OS=Escherichia
vulneris GN=crtX PE=3 SV=1
Length = 413

Score = 29.3 bits (64), Expect = 9.8
Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
Frame = +3

Query: 327 PDLPFPPHRMPATLHYLGSL--SPMESLERSP 416
P L FP +P HY+G+L P +ERSP
Sbjct: 206 PALDFPRRALPNCFHYVGALRYQPPPQVERSP 237


tr_hit_id A9U0L8
Definition tr|A9U0L8|A9U0L8_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
Align length 84
Score (bit) 120.0
E-value 3.0e-26
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP911766|Adiantum capillus-veneris mRNA, clone:
YMU001_000008_H11.
(485 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|A9U0L8|A9U0L8_PHYPA Predicted protein OS=Physcomitrella paten... 120 3e-26
tr|Q5ZEI0|Q5ZEI0_ORYSJ cDNA clone:J023009J05, full insert sequen... 101 2e-20
tr|B8A038|B8A038_MAIZE Putative uncharacterized protein OS=Zea m... 99 8e-20
tr|B6U1W7|B6U1W7_MAIZE SLT1 protein OS=Zea mays PE=2 SV=1 99 8e-20
tr|A7NZ35|A7NZ35_VITVI Chromosome chr6 scaffold_3, whole genome ... 99 8e-20
tr|A2ZPB5|A2ZPB5_ORYSJ Putative uncharacterized protein OS=Oryza... 94 3e-18
tr|A2WKR0|A2WKR0_ORYSI Putative uncharacterized protein OS=Oryza... 94 3e-18
tr|A7PIX0|A7PIX0_VITVI Chromosome chr13 scaffold_17, whole genom... 93 7e-18
tr|A5AGE0|A5AGE0_VITVI Putative uncharacterized protein OS=Vitis... 93 7e-18
tr|Q943K6|Q943K6_ORYSJ cDNA clone:J023034F22, full insert sequen... 92 1e-17
tr|A2WWU6|A2WWU6_ORYSI Putative uncharacterized protein OS=Oryza... 92 1e-17
tr|Q9LHA9|Q9LHA9_ARATH Genomic DNA, chromosome 3, BAC clone: T16... 89 8e-17
tr|Q10NA2|Q10NA2_ORYSJ SLT1 protein, putative, expressed (Putati... 89 1e-16
tr|Q0DT06|Q0DT06_ORYSJ Os03g0277100 protein (Fragment) OS=Oryza ... 89 1e-16
tr|A2XF46|A2XF46_ORYSI Putative uncharacterized protein OS=Oryza... 89 1e-16
tr|Q3EBL0|Q3EBL0_ARATH Uncharacterized protein At2g37570.2 OS=Ar... 89 1e-16
tr|O80926|O80926_ARATH Expressed protein (Putative uncharacteriz... 89 1e-16
tr|B8A2M5|B8A2M5_MAIZE Putative uncharacterized protein OS=Zea m... 88 2e-16
tr|B8A1F4|B8A1F4_MAIZE Putative uncharacterized protein OS=Zea m... 88 2e-16
tr|A7PNK9|A7PNK9_VITVI Chromosome chr8 scaffold_23, whole genome... 87 4e-16
tr|B6SW94|B6SW94_MAIZE SLT1 protein OS=Zea mays PE=2 SV=1 86 1e-15
tr|B6SV12|B6SV12_MAIZE SLT1 protein OS=Zea mays PE=2 SV=1 86 1e-15
tr|B6SV01|B6SV01_MAIZE Putative uncharacterized protein OS=Zea m... 86 1e-15
tr|Q9FQY3|Q9FQY3_TOBAC SLT1 protein OS=Nicotiana tabacum PE=2 SV=1 76 9e-13
tr|Q9LZ54|Q9LZ54_ARATH Putative uncharacterized protein T22P11_7... 65 2e-09
tr|Q9C5N0|Q9C5N0_ARATH Putative uncharacterized protein At5g0248... 65 2e-09
tr|A9S7R6|A9S7R6_PHYPA Predicted protein OS=Physcomitrella paten... 34 3.1
tr|B0DV44|B0DV44_LACBS Predicted protein OS=Laccaria bicolor (st... 34 3.1
tr|Q80WQ9|Q80WQ9_MOUSE Zinc finger, BED domain containing 4 OS=M... 33 7.0
tr|Q80TV3|Q80TV3_MOUSE MKIAA0637 protein (Fragment) OS=Mus muscu... 33 7.0

>tr|A9U0L8|A9U0L8_PHYPA Predicted protein OS=Physcomitrella patens
subsp. patens GN=PHYPADRAFT_200096 PE=4 SV=1
Length = 489

Score = 120 bits (302), Expect = 3e-26
Identities = 59/84 (70%), Positives = 66/84 (78%)
Frame = -3

Query: 483 PVLTRGERTFKLTDATPEHCPEGDFVREIPLATRIPDNAELQAFYVEEMAGLEIMVPKHL 304
P + RG+RTFKLTD PEHC GDFVREI LATRIP+NA+L+AFY E AGLEIMVPKH
Sbjct: 406 PTVVRGDRTFKLTDPNPEHCGPGDFVREIGLATRIPENADLKAFYAEACAGLEIMVPKHN 465

Query: 303 HFSEEREVRVFLPPQLGKSGVQLL 232
SEEREVRVFLPPQ+ + LL
Sbjct: 466 ILSEEREVRVFLPPQMSHTEALLL 489


>tr|Q5ZEI0|Q5ZEI0_ORYSJ cDNA clone:J023009J05, full insert sequence
OS=Oryza sativa subsp. japonica GN=P0009G03.17 PE=2 SV=1
Length = 547

Score = 101 bits (252), Expect = 2e-20
Identities = 51/84 (60%), Positives = 64/84 (76%), Gaps = 1/84 (1%)
Frame = -3

Query: 483 PVLTRGERTFKLTDATPEHCPEGDFVREIPLATRIPDNAELQAFYVEEMAGLEIMVPKHL 304
P + R +RTFKLTD PEHCP G+FVREIPLATRIP++A+L+A+Y E GLEIMVPKH
Sbjct: 463 PFVKRHDRTFKLTDPFPEHCPPGEFVREIPLATRIPEDAKLEAYYDETGTGLEIMVPKHR 522

Query: 303 HFSEEREVRVFL-PPQLGKSGVQL 235
EE EV+V + PP LG++ + L
Sbjct: 523 VGPEEHEVQVCMRPPHLGENDLLL 546


>tr|B8A038|B8A038_MAIZE Putative uncharacterized protein OS=Zea mays
PE=2 SV=1
Length = 537

Score = 99.4 bits (246), Expect = 8e-20
Identities = 49/84 (58%), Positives = 63/84 (75%), Gaps = 1/84 (1%)
Frame = -3

Query: 483 PVLTRGERTFKLTDATPEHCPEGDFVREIPLATRIPDNAELQAFYVEEMAGLEIMVPKHL 304
P + + +RTFKLTD PEHCP G+FVREIPLATRIP++A+++A+Y E GLEIMVPKH
Sbjct: 453 PYIKKHDRTFKLTDPFPEHCPPGEFVREIPLATRIPEDAKIEAYYDETGTGLEIMVPKHR 512

Query: 303 HFSEEREVRVFL-PPQLGKSGVQL 235
EE EV+V + PP LG + + L
Sbjct: 513 VGPEEHEVQVCMRPPHLGDNDLVL 536


>tr|B6U1W7|B6U1W7_MAIZE SLT1 protein OS=Zea mays PE=2 SV=1
Length = 539

Score = 99.4 bits (246), Expect = 8e-20
Identities = 49/84 (58%), Positives = 63/84 (75%), Gaps = 1/84 (1%)
Frame = -3

Query: 483 PVLTRGERTFKLTDATPEHCPEGDFVREIPLATRIPDNAELQAFYVEEMAGLEIMVPKHL 304
P + + +RTFKLTD PEHCP G+FVREIPLATRIP++A+++A+Y E GLEIMVPKH
Sbjct: 455 PYIKKHDRTFKLTDPFPEHCPPGEFVREIPLATRIPEDAKIEAYYDETGTGLEIMVPKHR 514

Query: 303 HFSEEREVRVFL-PPQLGKSGVQL 235
EE EV+V + PP LG + + L
Sbjct: 515 VGPEEHEVQVCMRPPHLGDNDLVL 538


>tr|A7NZ35|A7NZ35_VITVI Chromosome chr6 scaffold_3, whole genome
shotgun sequence OS=Vitis vinifera GN=GSVIVT00024356001
PE=4 SV=1
Length = 500

Score = 99.4 bits (246), Expect = 8e-20
Identities = 48/77 (62%), Positives = 58/77 (75%)
Frame = -3

Query: 483 PVLTRGERTFKLTDATPEHCPEGDFVREIPLATRIPDNAELQAFYVEEMAGLEIMVPKHL 304
P++ R +RTFKLTD PEHCP G+F+REIPLATRIPD+A+L+A+ E LEI+VPKH
Sbjct: 417 PIIKRNDRTFKLTDPMPEHCPPGEFIREIPLATRIPDDAKLEAYGDETGTVLEILVPKHR 476

Query: 303 HFSEEREVRVFLPPQLG 253
EE EVRV L P LG
Sbjct: 477 VGPEEHEVRVCLRPHLG 493


>tr|A2ZPB5|A2ZPB5_ORYSJ Putative uncharacterized protein OS=Oryza
sativa subsp. japonica GN=OsJ_000387 PE=3 SV=1
Length = 952

Score = 94.0 bits (232), Expect = 3e-18
Identities = 45/69 (65%), Positives = 54/69 (78%)
Frame = -3

Query: 483 PVLTRGERTFKLTDATPEHCPEGDFVREIPLATRIPDNAELQAFYVEEMAGLEIMVPKHL 304
P + R +RTFKLTD PEHCP G+FVREIPLATRIP++A+L+A+Y E GLEIMVPKH
Sbjct: 463 PFVKRHDRTFKLTDPFPEHCPPGEFVREIPLATRIPEDAKLEAYYDETGTGLEIMVPKHR 522

Query: 303 HFSEEREVR 277
EE EV+
Sbjct: 523 VGPEEHEVQ 531


>tr|A2WKR0|A2WKR0_ORYSI Putative uncharacterized protein OS=Oryza
sativa subsp. indica GN=OsI_00421 PE=4 SV=1
Length = 535

Score = 94.0 bits (232), Expect = 3e-18
Identities = 45/69 (65%), Positives = 54/69 (78%)
Frame = -3

Query: 483 PVLTRGERTFKLTDATPEHCPEGDFVREIPLATRIPDNAELQAFYVEEMAGLEIMVPKHL 304
P + R +RTFKLTD PEHCP G+FVREIPLATRIP++A+L+A+Y E GLEIMVPKH
Sbjct: 463 PFVKRHDRTFKLTDPFPEHCPPGEFVREIPLATRIPEDAKLEAYYDETGTGLEIMVPKHR 522

Query: 303 HFSEEREVR 277
EE EV+
Sbjct: 523 VGPEEHEVQ 531


>tr|A7PIX0|A7PIX0_VITVI Chromosome chr13 scaffold_17, whole genome
shotgun sequence OS=Vitis vinifera GN=GSVIVT00018505001
PE=4 SV=1
Length = 493

Score = 92.8 bits (229), Expect = 7e-18
Identities = 47/77 (61%), Positives = 55/77 (71%)
Frame = -3

Query: 483 PVLTRGERTFKLTDATPEHCPEGDFVREIPLATRIPDNAELQAFYVEEMAGLEIMVPKHL 304
P + R RTFKLTD TPEHCP GDF+REIPL TRIP++A+L+A+ E LEI+VPK
Sbjct: 410 PFIKRHNRTFKLTDPTPEHCPPGDFIREIPLPTRIPEDAKLEAYRDETGTMLEIVVPKQR 469

Query: 303 HFSEEREVRVFLPPQLG 253
EE EVRV L P LG
Sbjct: 470 VGPEEHEVRVCLRPLLG 486


>tr|A5AGE0|A5AGE0_VITVI Putative uncharacterized protein OS=Vitis
vinifera GN=VITISV_041185 PE=4 SV=1
Length = 493

Score = 92.8 bits (229), Expect = 7e-18
Identities = 47/77 (61%), Positives = 55/77 (71%)
Frame = -3

Query: 483 PVLTRGERTFKLTDATPEHCPEGDFVREIPLATRIPDNAELQAFYVEEMAGLEIMVPKHL 304
P + R RTFKLTD TPEHCP GDF+REIPL TRIP++A+L+A+ E LEI+VPK
Sbjct: 410 PFIKRHNRTFKLTDPTPEHCPPGDFIREIPLPTRIPEDAKLEAYRDETGTMLEIVVPKQR 469

Query: 303 HFSEEREVRVFLPPQLG 253
EE EVRV L P LG
Sbjct: 470 VGPEEHEVRVCLRPLLG 486


>tr|Q943K6|Q943K6_ORYSJ cDNA clone:J023034F22, full insert sequence
OS=Oryza sativa subsp. japonica GN=P0031D11.42 PE=2 SV=1
Length = 521

Score = 92.4 bits (228), Expect = 1e-17
Identities = 47/84 (55%), Positives = 60/84 (71%), Gaps = 1/84 (1%)
Frame = -3

Query: 483 PVLTRGERTFKLTDATPEHCPEGDFVREIPLATRIPDNAELQAFYVEEMAGLEIMVPKHL 304
P + R +R FKL D PEHCP G+FVREIPLATRIP++A+L+A++ E A LEIMVPK
Sbjct: 437 PYIRRHDRVFKLADPMPEHCPHGEFVREIPLATRIPEDAKLEAYFDEAAAVLEIMVPKRG 496

Query: 303 HFSEEREVRVFL-PPQLGKSGVQL 235
+ EE EVRV + PP L + + L
Sbjct: 497 NEPEEHEVRVSMRPPHLAANDLLL 520