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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP911773
Clone id YMU001_000009_A07
Library
Length 498
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000009_A07.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
TTTTACAAAACCACAAATTTAAAGGCATTTATATACACCCACATGGTATGACTTCTATGT
TTAGCAACAATACATCTATCATTGCATCCCCGACTCTCTTTTCTGGGTAAGTGTGCCACA
ATAATTTGCGAGTCAGCTATAACAAAATCACAAGGCGCACCTTCAAAAGGAGAGTTCCTT
TCAAGATGCTTGACACTCACATTATTACATCACAACCCTCTTGCCCTCCAATTCCCATCA
AAATCAATGACAAAAACCATGGGCATCATTCCACCCCACATGATCATGGGGGACAGCATT
AGACTAGAATTCACTGCATAAGACCCCTCCGGAACACGGTATTCGTCAATCATAGCTCGC
ATTTAAGAACTTCAGCAATTCATTTCTGTTGTTCTCTGCAAGCCTGTCCTCTTTTGTCTT
CTCAACCTTCATGAGGATCTTCTTGCCTGAAACAGCGCTTCGCCTTACCCCATCGTCCTT
CGTCTCACCCAAGAACTT
■■Homology search results ■■ -
sp_hit_id P06573
Definition sp|P06573|ERM_STRSA rRNA adenine N-6-methyltransferase OS=Streptococcus sanguis
Align length 37
Score (bit) 32.0
E-value 1.6
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP911773|Adiantum capillus-veneris mRNA, clone:
YMU001_000009_A07.
         (498 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P06573|ERM_STRSA rRNA adenine N-6-methyltransferase OS=Strept...    32   1.6  
sp|P21236|ERM_STRPN rRNA adenine N-6-methyltransferase OS=Strept...    32   1.6  
sp|P20173|ERMB_ENTFA rRNA adenine N-6-methyltransferase OS=Enter...    32   2.1  
sp|O74304|WIN1_SCHPO MAP kinase kinase kinase win1 OS=Schizosacc...    31   2.8  
sp|P0A4D5|ERM1_ENTFA rRNA adenine N-6-methyltransferase OS=Enter...    31   2.8  
sp|P0A4D6|ERM1_CLOPE rRNA adenine N-6-methyltransferase OS=Clost...    31   2.8  
sp|P10738|ERMB_ECOLX rRNA adenine N-6-methyltransferase OS=Esche...    31   3.7  
sp|Q54I36|KYK3_DICDI Dual specificity protein kinase dpyk3 OS=Di...    30   4.7  
sp|Q7XUJ2|YSL9_ORYSJ Probable metal-nicotianamine transporter YS...    30   6.1  
sp|P31332|L_SYNV Large structural protein OS=Sonchus yellow net ...    30   8.0  
sp|Q55451|CBIX_SYNY3 Sirohydrochlorin cobaltochelatase OS=Synech...    30   8.0  

>sp|P06573|ERM_STRSA rRNA adenine N-6-methyltransferase
           OS=Streptococcus sanguis PE=3 SV=1
          Length = 245

 Score = 32.0 bits (71), Expect = 1.6
 Identities = 15/37 (40%), Positives = 22/37 (59%)
 Frame = +1

Query: 172 EFLSRCLTLTLLHHNPLALQFPSKSMTKTMGIIPPHM 282
           E L   + +TL+H + L  QFP+K   K +G IP H+
Sbjct: 69  EKLKLNIRVTLIHQDILQFQFPNKQRYKIVGSIPYHL 105


>sp|P21236|ERM_STRPN rRNA adenine N-6-methyltransferase
           OS=Streptococcus pneumoniae GN=erm PE=1 SV=1
          Length = 245

 Score = 32.0 bits (71), Expect = 1.6
 Identities = 15/37 (40%), Positives = 22/37 (59%)
 Frame = +1

Query: 172 EFLSRCLTLTLLHHNPLALQFPSKSMTKTMGIIPPHM 282
           E L   + +TL+H + L  QFP+K   K +G IP H+
Sbjct: 69  EKLKLNIRVTLIHQDILQFQFPNKQRYKIVGSIPYHL 105


>sp|P20173|ERMB_ENTFA rRNA adenine N-6-methyltransferase
           OS=Enterococcus faecalis GN=ermB PE=3 SV=2
          Length = 245

 Score = 31.6 bits (70), Expect = 2.1
 Identities = 15/37 (40%), Positives = 22/37 (59%)
 Frame = +1

Query: 172 EFLSRCLTLTLLHHNPLALQFPSKSMTKTMGIIPPHM 282
           E L   + +TL+H + L  QFP+K   K +G IP H+
Sbjct: 69  EKLKLNIRVTLIHQDILQFQFPNKQRYKIVGNIPYHL 105


>sp|O74304|WIN1_SCHPO MAP kinase kinase kinase win1
            OS=Schizosaccharomyces pombe GN=win1 PE=1 SV=1
          Length = 1436

 Score = 31.2 bits (69), Expect = 2.8
 Identities = 17/68 (25%), Positives = 34/68 (50%)
 Frame = +1

Query: 172  EFLSRCLTLTLLHHNPLALQFPSKSMTKTMGIIPPHMIMGDSIRLEFTA*DPSGTRYSSI 351
            E + +C+ L LLH + +  +   +SM +  G IP  ++  +S R   +  + +      +
Sbjct: 1012 EKVGKCVALLLLHFDVMGTKHAGRSMDQQAGDIPARLVRNNSDRSRLSDNELASFVKEEV 1071

Query: 352  IARI*ELQ 375
            + RI EL+
Sbjct: 1072 MHRIIELE 1079


>sp|P0A4D5|ERM1_ENTFA rRNA adenine N-6-methyltransferase
           OS=Enterococcus faecalis GN=ermBP PE=3 SV=1
          Length = 245

 Score = 31.2 bits (69), Expect = 2.8
 Identities = 13/29 (44%), Positives = 19/29 (65%)
 Frame = +1

Query: 196 LTLLHHNPLALQFPSKSMTKTMGIIPPHM 282
           +TL+H + L  QFP+K   K +G IP H+
Sbjct: 77  VTLIHQDILQFQFPNKQRYKIVGSIPYHL 105


>sp|P0A4D6|ERM1_CLOPE rRNA adenine N-6-methyltransferase
           OS=Clostridium perfringens GN=ermBP PE=3 SV=1
          Length = 245

 Score = 31.2 bits (69), Expect = 2.8
 Identities = 13/29 (44%), Positives = 19/29 (65%)
 Frame = +1

Query: 196 LTLLHHNPLALQFPSKSMTKTMGIIPPHM 282
           +TL+H + L  QFP+K   K +G IP H+
Sbjct: 77  VTLIHQDILQFQFPNKQRYKIVGSIPYHL 105


>sp|P10738|ERMB_ECOLX rRNA adenine N-6-methyltransferase
           OS=Escherichia coli GN=ermBC PE=3 SV=1
          Length = 245

 Score = 30.8 bits (68), Expect = 3.7
 Identities = 13/29 (44%), Positives = 19/29 (65%)
 Frame = +1

Query: 196 LTLLHHNPLALQFPSKSMTKTMGIIPPHM 282
           +TL+H + L  QFP+K   K +G IP H+
Sbjct: 77  VTLIHQDILQFQFPNKQRYKIVGNIPYHL 105


>sp|Q54I36|KYK3_DICDI Dual specificity protein kinase dpyk3
           OS=Dictyostelium discoideum GN=pkyA PE=1 SV=1
          Length = 1338

 Score = 30.4 bits (67), Expect = 4.7
 Identities = 21/73 (28%), Positives = 29/73 (39%)
 Frame = +3

Query: 159 TFKRRVPFKMLDTHIITSQPSCPPIPIKINDKNHGHHSTPHDHGGQH*TRIHCIRPLRNT 338
           TF    P   ++T +I S      I    N  NH HH   H+H   H          +  
Sbjct: 421 TFPGTNPINCINTSVINS------ITANTNCINHHHHHHQHNHHNHH----------QGH 464

Query: 339 VFVNHSSHLRTSA 377
             +N+S H+R SA
Sbjct: 465 NNINNSGHIRKSA 477


>sp|Q7XUJ2|YSL9_ORYSJ Probable metal-nicotianamine transporter YSL9
           OS=Oryza sativa subsp. japonica GN=YSL9 PE=2 SV=2
          Length = 684

 Score = 30.0 bits (66), Expect = 6.1
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = -2

Query: 323 SYAVNSSLMLSPMIMWGGMMPMVFVIDFDGNW 228
           S+ VN SL+L  ++ WG M P+  + D  G+W
Sbjct: 293 SHLVNLSLLLGAILSWGVMWPL--ISDLKGDW 322


>sp|P31332|L_SYNV Large structural protein OS=Sonchus yellow net virus
            GN=L PE=2 SV=1
          Length = 2116

 Score = 29.6 bits (65), Expect = 8.0
 Identities = 17/56 (30%), Positives = 24/56 (42%), Gaps = 3/56 (5%)
 Frame = +3

Query: 228  PIPIKIN-DKNHGHHSTPHDHGGQH*TRIHCIR--PLRNTVFVNHSSHLRTSAIHF 386
            P+P +I  D  H +H     HGG     IH         + F+NHS      ++HF
Sbjct: 1273 PLPDEITGDVEHRYHDMATKHGGIPSNLIHLYTHASCNTSTFINHSKGAANESLHF 1328
tr_hit_id A7PRY7
Definition tr|A7PRY7|A7PRY7_VITVI Chromosome chr14 scaffold_27, whole genome shotgun sequence OS=Vitis vinifera
Align length 50
Score (bit) 83.2
E-value 6.0e-15
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP911773|Adiantum capillus-veneris mRNA, clone:
YMU001_000009_A07.
         (498 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A7PRY7|A7PRY7_VITVI Chromosome chr14 scaffold_27, whole genom...    83   6e-15
tr|Q0IN06|Q0IN06_ORYSJ Os12g0516700 protein OS=Oryza sativa subs...    82   2e-14
tr|B8BMF6|B8BMF6_ORYSI Putative uncharacterized protein OS=Oryza...    82   2e-14
tr|B7F928|B7F928_ORYSJ cDNA, clone: J065213I02, full insert sequ...    82   2e-14
tr|Q0IMQ7|Q0IMQ7_ORYSJ Os12g0554000 protein OS=Oryza sativa subs...    80   5e-14
tr|A3CHW3|A3CHW3_ORYSJ Putative uncharacterized protein OS=Oryza...    80   5e-14
tr|B6T8W4|B6T8W4_MAIZE Splicing factor, arginine/serine-rich 12 ...    76   1e-12
tr|B3RJI4|B3RJI4_TRIAD Putative uncharacterized protein OS=Trich...    54   5e-06
tr|Q5TYN1|Q5TYN1_DANRE Novel protein OS=Danio rerio GN=si:ch211-...    51   3e-05
tr|Q1ED23|Q1ED23_DANRE Si:ch211-22i13.2 protein OS=Danio rerio G...    51   3e-05
tr|A2RUZ7|A2RUZ7_DANRE Si:ch211-22i13.2 OS=Danio rerio GN=si:ch2...    51   3e-05
tr|A8N072|A8N072_COPC7 Predicted protein OS=Coprinopsis cinerea ...    47   4e-04
tr|Q4T568|Q4T568_TETNG Chromosome 14 SCAF9379, whole genome shot...    46   8e-04
tr|A7STU9|A7STU9_NEMVE Predicted protein OS=Nematostella vectens...    44   0.004
tr|A9RVD7|A9RVD7_PHYPA Predicted protein OS=Physcomitrella paten...    39   0.10 
tr|B8BM70|B8BM70_ORYSI Putative uncharacterized protein OS=Oryza...    36   0.88 
tr|Q32N85|Q32N85_XENLA MGC78973 protein OS=Xenopus laevis GN=MGC...    35   2.6  
tr|Q6IP42|Q6IP42_XENLA MGC78973 protein OS=Xenopus laevis GN=MGC...    34   4.4  
tr|B7JWT2|B7JWT2_SYNP8 Ferrochelatase OS=Synechococcus sp. (stra...    33   5.7  
tr|B4C0L6|B4C0L6_9CHRO Ferrochelatase OS=Cyanothece sp. PCC 8802...    33   5.7  
tr|B4NPR6|B4NPR6_DROWI GK18522 OS=Drosophila willistoni GN=GK185...    33   5.7  
tr|B4PM92|B4PM92_DROYA GE24601 OS=Drosophila yakuba GN=GE24601 P...    33   7.5  

>tr|A7PRY7|A7PRY7_VITVI Chromosome chr14 scaffold_27, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00022686001
           PE=4 SV=1
          Length = 171

 Score = 83.2 bits (204), Expect = 6e-15
 Identities = 40/50 (80%), Positives = 45/50 (90%)
 Frame = -1

Query: 498 KFLGETKDDGVRRSAVSGKKILMKVEKTKEDRLAENNRNELLKFLNASYD 349
           KFLG  KDD VRRSAVSGKKIL+K++K+KED+ AEN RNELLKFLNASYD
Sbjct: 122 KFLGRGKDDSVRRSAVSGKKILLKLDKSKEDKAAENKRNELLKFLNASYD 171


>tr|Q0IN06|Q0IN06_ORYSJ Os12g0516700 protein OS=Oryza sativa subsp.
           japonica GN=Os12g0516700 PE=4 SV=1
          Length = 178

 Score = 81.6 bits (200), Expect = 2e-14
 Identities = 38/50 (76%), Positives = 46/50 (92%)
 Frame = -1

Query: 498 KFLGETKDDGVRRSAVSGKKILMKVEKTKEDRLAENNRNELLKFLNASYD 349
           KFLG  KD+GV+RSA+SGKKI+MK+EK+KED+ AE+ RNELLKFLNASYD
Sbjct: 129 KFLGRDKDEGVQRSAISGKKIMMKLEKSKEDKQAESKRNELLKFLNASYD 178


>tr|B8BMF6|B8BMF6_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_38678 PE=4 SV=1
          Length = 196

 Score = 81.6 bits (200), Expect = 2e-14
 Identities = 38/50 (76%), Positives = 46/50 (92%)
 Frame = -1

Query: 498 KFLGETKDDGVRRSAVSGKKILMKVEKTKEDRLAENNRNELLKFLNASYD 349
           KFLG  KD+GV+RSA+SGKKI+MK+EK+KED+ AE+ RNELLKFLNASYD
Sbjct: 147 KFLGRDKDEGVQRSAISGKKIMMKLEKSKEDKQAESKRNELLKFLNASYD 196


>tr|B7F928|B7F928_ORYSJ cDNA, clone: J065213I02, full insert
           sequence OS=Oryza sativa subsp. japonica PE=2 SV=1
          Length = 196

 Score = 81.6 bits (200), Expect = 2e-14
 Identities = 38/50 (76%), Positives = 46/50 (92%)
 Frame = -1

Query: 498 KFLGETKDDGVRRSAVSGKKILMKVEKTKEDRLAENNRNELLKFLNASYD 349
           KFLG  KD+GV+RSA+SGKKI+MK+EK+KED+ AE+ RNELLKFLNASYD
Sbjct: 147 KFLGRDKDEGVQRSAISGKKIMMKLEKSKEDKQAESKRNELLKFLNASYD 196


>tr|Q0IMQ7|Q0IMQ7_ORYSJ Os12g0554000 protein OS=Oryza sativa subsp.
           japonica GN=Os12g0554000 PE=4 SV=1
          Length = 122

 Score = 80.1 bits (196), Expect = 5e-14
 Identities = 37/50 (74%), Positives = 46/50 (92%)
 Frame = -1

Query: 498 KFLGETKDDGVRRSAVSGKKILMKVEKTKEDRLAENNRNELLKFLNASYD 349
           +FLG  KD+GV+RSA+SGKKI+MK+EK+KED+ AE+ RNELLKFLNASYD
Sbjct: 73  EFLGRDKDEGVQRSAISGKKIMMKLEKSKEDKQAESKRNELLKFLNASYD 122


>tr|A3CHW3|A3CHW3_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_034885 PE=4 SV=1
          Length = 160

 Score = 80.1 bits (196), Expect = 5e-14
 Identities = 37/50 (74%), Positives = 46/50 (92%)
 Frame = -1

Query: 498 KFLGETKDDGVRRSAVSGKKILMKVEKTKEDRLAENNRNELLKFLNASYD 349
           +FLG  KD+GV+RSA+SGKKI+MK+EK+KED+ AE+ RNELLKFLNASYD
Sbjct: 111 EFLGRDKDEGVQRSAISGKKIMMKLEKSKEDKQAESKRNELLKFLNASYD 160


>tr|B6T8W4|B6T8W4_MAIZE Splicing factor, arginine/serine-rich 12
           OS=Zea mays PE=2 SV=1
          Length = 161

 Score = 75.9 bits (185), Expect = 1e-12
 Identities = 37/52 (71%), Positives = 46/52 (88%), Gaps = 2/52 (3%)
 Frame = -1

Query: 498 KFLG--ETKDDGVRRSAVSGKKILMKVEKTKEDRLAENNRNELLKFLNASYD 349
           KFLG  + K++G +RSA+SGKKI+MK+EKTKED+ AE+ RNELLKFLNASYD
Sbjct: 110 KFLGRDKEKEEGTQRSAISGKKIMMKLEKTKEDKAAESKRNELLKFLNASYD 161


>tr|B3RJI4|B3RJI4_TRIAD Putative uncharacterized protein
           OS=Trichoplax adhaerens GN=TRIADDRAFT_52637 PE=4 SV=1
          Length = 102

 Score = 53.5 bits (127), Expect = 5e-06
 Identities = 25/49 (51%), Positives = 36/49 (73%)
 Frame = -1

Query: 498 KFLGETKDDGVRRSAVSGKKILMKVEKTKEDRLAENNRNELLKFLNASY 352
           ++L E K D  +RSAVSGKK+ +K++K+ ED+  E NR ELL FLN+ +
Sbjct: 53  QYLQERKKDEDQRSAVSGKKMKLKIKKSTEDKQREKNRQELLNFLNSQF 101


>tr|Q5TYN1|Q5TYN1_DANRE Novel protein OS=Danio rerio
           GN=si:ch211-22i13.2 PE=2 SV=1
          Length = 175

 Score = 50.8 bits (120), Expect = 3e-05
 Identities = 26/49 (53%), Positives = 36/49 (73%)
 Frame = -1

Query: 498 KFLGETKDDGVRRSAVSGKKILMKVEKTKEDRLAENNRNELLKFLNASY 352
           K+L E K  G + S +SGKKI MKV+K+K+D+  + NR ELL FLN++Y
Sbjct: 128 KYLKEKKKSG-KYSMISGKKIKMKVKKSKKDKQRDKNRAELLDFLNSTY 175


>tr|Q1ED23|Q1ED23_DANRE Si:ch211-22i13.2 protein OS=Danio rerio
           GN=si:ch211-22i13.2 PE=2 SV=1
          Length = 175

 Score = 50.8 bits (120), Expect = 3e-05
 Identities = 26/49 (53%), Positives = 36/49 (73%)
 Frame = -1

Query: 498 KFLGETKDDGVRRSAVSGKKILMKVEKTKEDRLAENNRNELLKFLNASY 352
           K+L E K  G + S +SGKKI MKV+K+K+D+  + NR ELL FLN++Y
Sbjct: 128 KYLKEKKKSG-KYSMISGKKIKMKVKKSKKDKQRDKNRAELLDFLNSTY 175