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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP911792
Clone id YMU001_000009_C03
Library
Length 533
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000009_C03.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
GAGAGAGAGAGAGAGAGCTCCCACTGGGAGAAATGTTGAGAAGCGCAGTAAAGATGGGGC
ATGGTGGAGAGAGAGAGCTCCCACTGGGAGAAATGTTGAGAAGCGCAGTAAAGATGGGGC
ATGGTGGAGGAAGTACTAAGCAGAAGTAGATGCGGCAGCAATTGTGTTAAAGCTGCTCAA
ATTTTGGGAGAGAGGGGGATGATGGATGGACAGTATCGGTATGGCACTGTGGTGGAGAGG
CCGCAAGCTCCGTATCACCATGTAGAAGAAGATGCAGGAGCAATAGTGAGCTTGCCTCGA
CCCCAGAGTAGGGGCCTCTACAAACGATCAACGCTTTCTACTTGTCTTTGTGCTGGGCAC
ATATTTCGGCCCCGACATCAAACATGAAACACCTCGCGAATTCTGCTCTCCATAGAGCAT
CGCTCCGGCTTCCCTCCTACACATCTCATGACCTCTTCCGATCTGTCTTCAAAATTGCAG
AGATTGAGAGCATTTACTATTTCGCGCTTCGGCATGCCCACCCATCCGCACGA
■■Homology search results ■■ -
sp_hit_id P97868
Definition sp|P97868|RBBP6_MOUSE Retinoblastoma-binding protein 6 OS=Mus musculus
Align length 45
Score (bit) 30.4
E-value 5.6
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP911792|Adiantum capillus-veneris mRNA, clone:
YMU001_000009_C03.
         (533 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P97868|RBBP6_MOUSE Retinoblastoma-binding protein 6 OS=Mus mu...    30   5.6  
sp|Q81020|VE1_HPV54 Replication protein E1 OS=Human papillomavir...    30   9.5  

>sp|P97868|RBBP6_MOUSE Retinoblastoma-binding protein 6 OS=Mus
           musculus GN=Rbbp6 PE=1 SV=5
          Length = 1790

 Score = 30.4 bits (67), Expect = 5.6
 Identities = 14/45 (31%), Positives = 24/45 (53%)
 Frame = +2

Query: 2   RERERAPTGRNVEKRSKDGAWWRERAPTGRNVEKRSKDGAWWRKY 136
           R R R+P  R    RS+    +R ++PT RNV +   +  ++ +Y
Sbjct: 756 RSRSRSPPYRRYHSRSRSPQAFRGQSPTKRNVPQGETEREYFNRY 800


>sp|Q81020|VE1_HPV54 Replication protein E1 OS=Human papillomavirus
           type 54 GN=E1 PE=3 SV=1
          Length = 633

 Score = 29.6 bits (65), Expect = 9.5
 Identities = 12/26 (46%), Positives = 18/26 (69%)
 Frame = +1

Query: 112 RWGMVEEVLSRSRCGSNCVKAAQILG 189
           RWGMV  +L+R +CG N +  ++ LG
Sbjct: 253 RWGMVLLLLTRFKCGKNRLTVSKCLG 278
tr_hit_id A9RMA9
Definition tr|A9RMA9|A9RMA9_PHYPA Predicted protein (Fragment) OS=Physcomitrella patens subsp. patens
Align length 44
Score (bit) 58.9
E-value 9.0e-16
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP911792|Adiantum capillus-veneris mRNA, clone:
YMU001_000009_C03.
         (533 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9RMA9|A9RMA9_PHYPA Predicted protein (Fragment) OS=Physcomit...    59   9e-16
tr|A7QPG3|A7QPG3_VITVI Chromosome chr18 scaffold_137, whole geno...    42   1e-07
tr|Q84KA7|Q84KA7_CUCME Heat shock protein-like protein OS=Cucumi...    44   2e-07
tr|Q8RWL4|Q8RWL4_ARATH Putative uncharacterized protein At1g5484...    35   0.012
tr|Q9ZVL2|Q9ZVL2_ARATH T22H22.23 protein (Putative uncharacteriz...    35   0.012
tr|Q3ECP5|Q3ECP5_ARATH Uncharacterized protein At1g54840.2 OS=Ar...    35   0.012
tr|Q19B61|Q19B61_MEHV1 23 kDa nuclear protein OS=Meleagrid herpe...    37   0.63 
tr|Q159G4|Q159G4_MEHV1 23-kDa nuclear protein OS=Meleagrid herpe...    37   0.63 
tr|A2GPI9|A2GPI9_TRIVA SRP, putative (Fragment) OS=Trichomonas v...    37   0.83 
tr|Q2H5F8|Q2H5F8_CHAGB Putative uncharacterized protein OS=Chaet...    37   0.83 
tr|A7T413|A7T413_NEMVE Predicted protein (Fragment) OS=Nematoste...    36   1.1  
tr|A7RVV6|A7RVV6_NEMVE Predicted protein (Fragment) OS=Nematoste...    36   1.4  
tr|A3JH95|A3JH95_9ALTE Carbon-phosphorus lyase complex subunit O...    35   1.8  
tr|B7PC51|B7PC51_IXOSC Cuticle protein, putative (Fragment) OS=I...    35   1.8  
tr|Q38A06|Q38A06_9TRYP Putative uncharacterized protein OS=Trypa...    35   2.4  
tr|Q26258|Q26258_CHITE BR2.2 protein (Fragment) OS=Chironomus te...    35   2.4  
tr|Q23804|Q23804_CHITE SpId (Fragment) OS=Chironomus tentans GN=...    35   2.4  
tr|A8TPD5|A8TPD5_9PROT Transcriptional regulator, GntR family pr...    34   5.4  
tr|Q23774|Q23774_CHITE 240 bp beta-repeat in Balbiani ring 2 (BR...    34   5.4  
tr|A2HCT5|A2HCT5_TRIVA Putative uncharacterized protein (Fragmen...    34   5.4  
tr|A6U6D1|A6U6D1_SINMW Putative uncharacterized protein OS=Sinor...    33   7.0  
tr|A2EHW7|A2EHW7_TRIVA Putative uncharacterized protein (Fragmen...    33   7.0  
tr|Q63T39|Q63T39_BURPS Putative uncharacterized protein OS=Burkh...    33   9.2  
tr|Q62JF2|Q62JF2_BURMA Putative uncharacterized protein OS=Burkh...    33   9.2  
tr|Q3JR60|Q3JR60_BURP1 Putative uncharacterized protein OS=Burkh...    33   9.2  
tr|Q2SWX0|Q2SWX0_BURTA Putative uncharacterized protein OS=Burkh...    33   9.2  
tr|Q1IS16|Q1IS16_ACIBL Putative uncharacterized protein OS=Acido...    33   9.2  
tr|Q13KI5|Q13KI5_BURXL Putative uncharacterized protein OS=Burkh...    33   9.2  
tr|Q0BE41|Q0BE41_BURCM Putative uncharacterized protein OS=Burkh...    33   9.2  
tr|B2UBD6|B2UBD6_RALPJ Putative uncharacterized protein OS=Ralst...    33   9.2  

>tr|A9RMA9|A9RMA9_PHYPA Predicted protein (Fragment)
           OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_24474 PE=4 SV=1
          Length = 319

 Score = 58.9 bits (141), Expect(2) = 9e-16
 Identities = 28/44 (63%), Positives = 36/44 (81%)
 Frame = +3

Query: 402 SALHRASLRLPSYTSHDLFRSVFKIAEIESIYYFALRHAHPSAR 533
           SAL R  + LP Y++ +L  SVFK++EIESIYYFALR++HPSAR
Sbjct: 26  SALQRTYMGLPPYSADELGGSVFKLSEIESIYYFALRNSHPSAR 69



 Score = 47.4 bits (111), Expect(2) = 9e-16
 Identities = 19/25 (76%), Positives = 23/25 (92%)
 Frame = +2

Query: 326 DQRFLLVFVLGTYFGPDIKHETPRE 400
           DQRFLLVF+LGTYFGPD++ E PR+
Sbjct: 1   DQRFLLVFILGTYFGPDLREEIPRK 25


>tr|A7QPG3|A7QPG3_VITVI Chromosome chr18 scaffold_137, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00002929001
           PE=4 SV=1
          Length = 395

 Score = 41.6 bits (96), Expect(2) = 1e-07
 Identities = 19/42 (45%), Positives = 28/42 (66%)
 Frame = +3

Query: 402 SALHRASLRLPSYTSHDLFRSVFKIAEIESIYYFALRHAHPS 527
           SA  R +  LP Y+ +DL  S   ++++ES+YYF LRHA P+
Sbjct: 45  SASQRVAEGLPPYSLNDLGLSFLSVSQLESLYYFILRHALPN 86



 Score = 37.0 bits (84), Expect(2) = 1e-07
 Identities = 16/36 (44%), Positives = 21/36 (58%)
 Frame = +2

Query: 302 PRVGASTNDQRFLLVFVLGTYFGPDIKHETPREFCS 409
           P   AS +D  FL  F++ TY GPD+K + PR   S
Sbjct: 12  PLSRASLSDLHFLANFIMSTYLGPDVKSDNPRRSAS 47


>tr|Q84KA7|Q84KA7_CUCME Heat shock protein-like protein OS=Cucumis
           melo GN=Hsp1 PE=4 SV=1
          Length = 391

 Score = 43.5 bits (101), Expect(2) = 2e-07
 Identities = 23/52 (44%), Positives = 29/52 (55%)
 Frame = +3

Query: 372 PTSNMKHLANSALHRASLRLPSYTSHDLFRSVFKIAEIESIYYFALRHAHPS 527
           PT   K    SAL R +  LP YTS  L  S+ K+ E+E I+Y+ LR A  S
Sbjct: 39  PTLKGKPAPKSALQRLAEELPPYTSDQLAGSLMKMVEVERIFYYVLRKADES 90



 Score = 34.3 bits (77), Expect(2) = 2e-07
 Identities = 14/23 (60%), Positives = 16/23 (69%)
 Frame = +2

Query: 314 ASTNDQRFLLVFVLGTYFGPDIK 382
           A  NDQ FLL F+ G YFGP +K
Sbjct: 20  APDNDQHFLLYFIAGIYFGPTLK 42


>tr|Q8RWL4|Q8RWL4_ARATH Putative uncharacterized protein At1g54840
           OS=Arabidopsis thaliana GN=At1g54840 PE=2 SV=1
          Length = 349

 Score = 35.0 bits (79), Expect(2) = 0.012
 Identities = 14/27 (51%), Positives = 21/27 (77%), Gaps = 2/27 (7%)
 Frame = +2

Query: 326 DQRFLLVFVLGTYFGPDIK--HETPRE 400
           D+ FLL F++GTYFGPD++  H  P++
Sbjct: 33  DKLFLLHFIIGTYFGPDLRKQHHRPKQ 59



 Score = 26.6 bits (57), Expect(2) = 0.012
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +3

Query: 450 DLFRSVFKIAEIESIYYFALRHAHPS 527
           +L  S+ K AE+E +YY  +R+  PS
Sbjct: 74  ELSGSLMKRAELERVYYHIIRNVDPS 99


>tr|Q9ZVL2|Q9ZVL2_ARATH T22H22.23 protein (Putative uncharacterized
           protein F14C21.38) OS=Arabidopsis thaliana GN=T22H22.23
           PE=4 SV=1
          Length = 345

 Score = 35.0 bits (79), Expect(2) = 0.012
 Identities = 14/27 (51%), Positives = 21/27 (77%), Gaps = 2/27 (7%)
 Frame = +2

Query: 326 DQRFLLVFVLGTYFGPDIK--HETPRE 400
           D+ FLL F++GTYFGPD++  H  P++
Sbjct: 29  DKLFLLHFIIGTYFGPDLRKQHHRPKQ 55



 Score = 26.6 bits (57), Expect(2) = 0.012
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +3

Query: 450 DLFRSVFKIAEIESIYYFALRHAHPS 527
           +L  S+ K AE+E +YY  +R+  PS
Sbjct: 70  ELSGSLMKRAELERVYYHIIRNVDPS 95


>tr|Q3ECP5|Q3ECP5_ARATH Uncharacterized protein At1g54840.2
           OS=Arabidopsis thaliana GN=At1g54840 PE=4 SV=1
          Length = 268

 Score = 35.0 bits (79), Expect(2) = 0.012
 Identities = 14/27 (51%), Positives = 21/27 (77%), Gaps = 2/27 (7%)
 Frame = +2

Query: 326 DQRFLLVFVLGTYFGPDIK--HETPRE 400
           D+ FLL F++GTYFGPD++  H  P++
Sbjct: 33  DKLFLLHFIIGTYFGPDLRKQHHRPKQ 59



 Score = 26.6 bits (57), Expect(2) = 0.012
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +3

Query: 450 DLFRSVFKIAEIESIYYFALRHAHPS 527
           +L  S+ K AE+E +YY  +R+  PS
Sbjct: 74  ELSGSLMKRAELERVYYHIIRNVDPS 99


>tr|Q19B61|Q19B61_MEHV1 23 kDa nuclear protein OS=Meleagrid
           herpesvirus 1 GN=MDV004 PE=4 SV=1
          Length = 195

 Score = 37.0 bits (84), Expect = 0.63
 Identities = 23/52 (44%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
 Frame = +2

Query: 47  SKDGAWWRERAPTGRNVEKR-SKDGAWWRKY*AEVDAAAIVLKLLKFWERGG 199
           S+DG WW    P  R+VE   S+DG WW +  AE+ A     KLL+   RGG
Sbjct: 96  SRDGRWWGRAEP--RSVENMGSRDGRWWGR--AELGA-----KLLRIGRRGG 138


>tr|Q159G4|Q159G4_MEHV1 23-kDa nuclear protein OS=Meleagrid
           herpesvirus 1 GN=MDV077 PE=4 SV=1
          Length = 196

 Score = 37.0 bits (84), Expect = 0.63
 Identities = 23/52 (44%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
 Frame = +2

Query: 47  SKDGAWWRERAPTGRNVEKR-SKDGAWWRKY*AEVDAAAIVLKLLKFWERGG 199
           S+DG WW    P  R+VE   S+DG WW +  AE+ A     KLL+   RGG
Sbjct: 96  SRDGRWWGRAEP--RSVENMGSRDGRWWGR--AELGA-----KLLRIGRRGG 138


>tr|A2GPI9|A2GPI9_TRIVA SRP, putative (Fragment) OS=Trichomonas
           vaginalis G3 GN=TVAG_134740 PE=4 SV=1
          Length = 667

 Score = 36.6 bits (83), Expect = 0.83
 Identities = 36/100 (36%), Positives = 50/100 (50%), Gaps = 18/100 (18%)
 Frame = -3

Query: 252 RSLRPLHHSAIPILSIHHPP--LSQNLSSFNTIAAASTSA*YFLHHAPS--------LLR 103
           +S   LHH+A    S+HH    L+Q+ SS +  A++   A   LHHA S        LL+
Sbjct: 117 QSASSLHHAAS---SLHHAASSLNQSTSSLDQGASSLHHAASSLHHAASSLQQSDSSLLQ 173

Query: 102 FSTFLPVGALSLHH--------APSLLRFSTFLPVGALSL 7
            ++ L   A SLHH        A SLL+ ++ L  GA SL
Sbjct: 174 SASSLQQSASSLHHAASSLHQDASSLLQSASSLDQGASSL 213



 Score = 33.9 bits (76), Expect = 5.4
 Identities = 31/85 (36%), Positives = 43/85 (50%), Gaps = 10/85 (11%)
 Frame = -3

Query: 258 VIRSLRPLHHSAIPILSIHHPP--LSQNLSSFNTIAAASTSA*YFLHHAPS--------L 109
           +++S   L  SA    S+HH    L+Q+ SS +  A++   A   LHHA S        L
Sbjct: 507 LLQSASSLQQSAS---SLHHTASSLNQSTSSLDQGASSLHHAASSLHHAASSLQQSASSL 563

Query: 108 LRFSTFLPVGALSLHHAPSLLRFST 34
           L+ ++ L   A SLHHA S L  ST
Sbjct: 564 LQSASSLQQSASSLHHAASSLNQST 588



 Score = 33.5 bits (75), Expect = 7.0
 Identities = 35/97 (36%), Positives = 45/97 (46%), Gaps = 15/97 (15%)
 Frame = -3

Query: 252 RSLRPLHHSAIPIL-----------SIHHPP--LSQNLSSFNTIAAASTSA*YFLHH-AP 115
           +S    HH+A  +L           S+HH    L Q+ SS    A++       LH  A 
Sbjct: 369 QSASSFHHAASSLLQSASSLQQSASSLHHAASSLHQDASSLLQSASSLDQGASSLHQDAS 428

Query: 114 SLLRFSTFLPVGALSLHHAPSLLRFST-FLPVGALSL 7
           SLL+ ++ L   A SLHHA S L  ST  L  GA SL
Sbjct: 429 SLLQSASSLQQSASSLHHAASSLNQSTSSLDQGASSL 465



 Score = 33.1 bits (74), Expect = 9.2
 Identities = 32/84 (38%), Positives = 43/84 (51%), Gaps = 2/84 (2%)
 Frame = -3

Query: 252 RSLRPLHHSAIPILSIHHPPLSQNLSSFNTIAAASTSA*YFLHH-APSLLRFSTFLPVGA 76
           +S   LHH+A  +    H   S  L S +++   ++S    LH  A SLL+ ++ L   A
Sbjct: 243 QSASSLHHAASSL----HQDASSLLQSASSLDQGASS----LHQDASSLLQSASSLQQSA 294

Query: 75  LSLHHAPSLLRFST-FLPVGALSL 7
            SLHHA S L  ST  L  GA SL
Sbjct: 295 SSLHHAASSLNQSTSSLDQGASSL 318


>tr|Q2H5F8|Q2H5F8_CHAGB Putative uncharacterized protein
           OS=Chaetomium globosum GN=CHGG_06107 PE=4 SV=1
          Length = 621

 Score = 36.6 bits (83), Expect = 0.83
 Identities = 26/89 (29%), Positives = 34/89 (38%), Gaps = 5/89 (5%)
 Frame = +2

Query: 2   RERERAPTGRNVEKRSKDGAWWRERAPTGR-----NVEKRSKDGAWWRKY*AEVDAAAIV 166
           R   R   G    +R  DG  WR R  TG      +V +  + G W              
Sbjct: 530 RSPPRTRNGPAARRRQPDGGGWRGRWGTGGRGHAVHVTEEVEGGGWG------------- 576

Query: 167 LKLLKFWERGG*WMDSIGMALWWRGRKLR 253
           ++ L+ W RGG W       LWWR R +R
Sbjct: 577 VRGLRRWRRGGMWW------LWWRVRNMR 599