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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP911797
Clone id YMU001_000009_C08
Library
Length 410
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000009_C08.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
TTTTTTTTTTCTTTTTTTGACACAAAACAATGTACCCTTATCCCTCTCCCCACATCATAA
AAAGAGCTCTGTACTTATTTCGGTACGTATGCGCAAAGTGGCGATGAATAAACATTGTCC
TCTAGCAACAAAGGATTCACAATAAAAGAGTACCAGCACTGTACATACAGTAATCTACCC
TCCATTAGCCTCTGTTGTACCAACCTCTAGGAGGTTGAGAAGAGTCCCCGTCATTCATAA
GCTTGTCCAGAACGACATTCAATTCCACAGATTGGCCGTTCTCTGTCAAATGCCTTACCA
CACCCCTAACCTGCTCCCGATGAAAACCCATAGAGACAACCTTGTCAATCACATCATCTA
CTGGAGTTCGCGATGAAGATCCACTTGATACTGGACTGGTAGCAGGTACA
■■Homology search results ■■ -
sp_hit_id P92958
Definition sp|P92958|KIN11_ARATH SNF1-related protein kinase catalytic subunit alpha KIN11 OS=Arabidopsis thaliana
Align length 38
Score (bit) 32.7
E-value 0.58
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP911797|Adiantum capillus-veneris mRNA, clone:
YMU001_000009_C08.
         (392 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P92958|KIN11_ARATH SNF1-related protein kinase catalytic subu...    33   0.58 
sp|P53804|TTC3_HUMAN Tetratricopeptide repeat protein 3 OS=Homo ...    31   2.2  
sp|O74438|MCP2_SCHPO Meiotic coiled-coil protein 2 OS=Schizosacc...    30   4.9  
sp|Q9M9Q4|FB9_ARATH F-box protein At1g15015 OS=Arabidopsis thali...    30   4.9  
sp|O94242|SYDM_SCHPO Aspartyl-tRNA synthetase, mitochondrial OS=...    29   6.4  
sp|Q7N2K4|MENH_PHOLL 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-c...    29   8.4  
sp|Q38997|KIN10_ARATH SNF1-related protein kinase catalytic subu...    29   8.4  
sp|P51611|HCFC1_MESAU Host cell factor OS=Mesocricetus auratus G...    29   8.4  
sp|Q8NB78|AOF1_HUMAN Flavin-containing amine oxidase domain-cont...    29   8.4  

>sp|P92958|KIN11_ARATH SNF1-related protein kinase catalytic subunit
           alpha KIN11 OS=Arabidopsis thaliana GN=KIN11 PE=1 SV=1
          Length = 512

 Score = 32.7 bits (73), Expect = 0.58
 Identities = 14/38 (36%), Positives = 26/38 (68%)
 Frame = -2

Query: 340 DDVIDKVVSMGFHREQVRGVVRHLTENGQSVELNVVLD 227
           ++++ +VV+MGF R QV   +R+ T+N  +V   ++LD
Sbjct: 296 EEIVQEVVNMGFDRNQVLESLRNRTQNDATVTYYLLLD 333


>sp|P53804|TTC3_HUMAN Tetratricopeptide repeat protein 3 OS=Homo
            sapiens GN=TTC3 PE=2 SV=1
          Length = 2025

 Score = 30.8 bits (68), Expect = 2.2
 Identities = 15/31 (48%), Positives = 19/31 (61%)
 Frame = +2

Query: 146  HTVIYPPLASVVPTSRRLRRVPVIHKLVQND 238
            +T IY PLAS+ P  +  R VPV+   V ND
Sbjct: 1345 YTSIYTPLASLSPEYQLPRSVPVVPSFVAND 1375


>sp|O74438|MCP2_SCHPO Meiotic coiled-coil protein 2
           OS=Schizosaccharomyces pombe GN=mcp2 PE=2 SV=1
          Length = 703

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 12/23 (52%), Positives = 17/23 (73%)
 Frame = -2

Query: 283 VVRHLTENGQSVELNVVLDKLMN 215
           VV+H+ ENGQ  +L  V+D L+N
Sbjct: 562 VVQHMVENGQGEDLKRVIDALLN 584


>sp|Q9M9Q4|FB9_ARATH F-box protein At1g15015 OS=Arabidopsis thaliana
           GN=At1g15015 PE=2 SV=1
          Length = 160

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 34/119 (28%), Positives = 49/119 (41%), Gaps = 6/119 (5%)
 Frame = +3

Query: 45  RALYLFRYVCAKWR*INIVL*QQRIHNKRVPALYIQ*STLH*PLLYQP---LGG*EESPS 215
           + L  F+ VC+ WR     +  QR  ++ +         +H  LL  P   L G  + PS
Sbjct: 20  KTLRKFKCVCSTWR---STIDSQRFKDRHM---------IHGQLLEDPDILLLGRWDPPS 67

Query: 216 F---ISLSRTTFNSTDWPFSVKCLTTPLTCSR*KPIETTLSITSSTGVRDEDPLDTGLV 383
                SL   TF+S+  PFS K  T P   +  K  ++         V D +   TGLV
Sbjct: 68  LSKNASLMTLTFDSSTMPFSFKIQTIPGKANFYKVTQSHSKSLKVVTVYDSNMEATGLV 126


>sp|O94242|SYDM_SCHPO Aspartyl-tRNA synthetase, mitochondrial
           OS=Schizosaccharomyces pombe GN=msd1 PE=2 SV=1
          Length = 611

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 27/89 (30%), Positives = 43/89 (48%), Gaps = 6/89 (6%)
 Frame = +2

Query: 2   TQNNVPLSLSPHHKKSS---VLISVRMRKVAMN-KHCPL--ATKDSQ*KSTSTVHTVIYP 163
           T   V  S+S H  + +   +L  +   K+ +  K  PL  +T  SQ KSTS + T+   
Sbjct: 27  TSRQVSKSISFHQLRDTHGTILQLLSTDKIILQQKREPLVSSTDFSQQKSTSVMRTLSSI 86

Query: 164 PLASVVPTSRRLRRVPVIHKLVQNDIQFH 250
           P  SVV  + +L+R P   +   N+ + H
Sbjct: 87  PPESVVQVTGKLQRRPEHDRRPGNEFELH 115


>sp|Q7N2K4|MENH_PHOLL
           2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate
           synthase OS=Photorhabdus luminescens subsp. laumondii
           GN=menH PE=3 SV=1
          Length = 278

 Score = 28.9 bits (63), Expect = 8.4
 Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 6/61 (9%)
 Frame = +2

Query: 176 VVPTSRRLRRVPVIHKLVQNDIQFHRLAVLCQMPYHTPNLLPMKTHRDN------LVNHI 337
           +VP  ++L  +P ++   +ND +F  LA  C +P  T   +    HR N      +VNH 
Sbjct: 192 LVPVLQQLT-LPFVYLCGENDKKFQHLAKRCALPLQTIPRVGHNAHRANAVAFAAVVNHF 250

Query: 338 I 340
           +
Sbjct: 251 L 251


>sp|Q38997|KIN10_ARATH SNF1-related protein kinase catalytic subunit
           alpha KIN10 OS=Arabidopsis thaliana GN=KIN10 PE=1 SV=2
          Length = 535

 Score = 28.9 bits (63), Expect = 8.4
 Identities = 11/38 (28%), Positives = 25/38 (65%)
 Frame = -2

Query: 340 DDVIDKVVSMGFHREQVRGVVRHLTENGQSVELNVVLD 227
           ++++ +V++MGF R  +   +R+ T+N  +V   ++LD
Sbjct: 318 EEILQEVINMGFDRNHLIESLRNRTQNDGTVTYYLILD 355


>sp|P51611|HCFC1_MESAU Host cell factor OS=Mesocricetus auratus
           GN=HCFC1 PE=1 SV=1
          Length = 2090

 Score = 28.9 bits (63), Expect = 8.4
 Identities = 19/45 (42%), Positives = 22/45 (48%)
 Frame = +3

Query: 258 PFSVKCLTTPLTCSR*KPIETTLSITSSTGVRDEDPLDTGLVAGT 392
           P S   L TP+T S  KP  TTL +  +TGV        G V GT
Sbjct: 850 PMSGVRLVTPVTVSAVKPAVTTLVVKGTTGV-----TTLGTVTGT 889


>sp|Q8NB78|AOF1_HUMAN Flavin-containing amine oxidase
           domain-containing protein 1 OS=Homo sapiens GN=AOF1 PE=1
           SV=2
          Length = 823

 Score = 28.9 bits (63), Expect = 8.4
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = -1

Query: 137 WYSFIVNPLLLEDNVYSSPLCAYVP 63
           WYS ++ P LL+D+V +  L AY P
Sbjct: 201 WYSMLILPPLLKDSVAAPLLSAYYP 225
tr_hit_id A9RVV5
Definition tr|A9RVV5|A9RVV5_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
Align length 57
Score (bit) 87.4
E-value 3.0e-16
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP911797|Adiantum capillus-veneris mRNA, clone:
YMU001_000009_C08.
         (392 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9RVV5|A9RVV5_PHYPA Predicted protein OS=Physcomitrella paten...    87   3e-16
tr|Q5VQG6|Q5VQG6_ORYSJ cDNA clone:J023110A06, full insert sequen...    87   4e-16
tr|Q0JQC8|Q0JQC8_ORYSJ Os01g0169900 protein (Fragment) OS=Oryza ...    87   4e-16
tr|A2WL57|A2WL57_ORYSI Putative uncharacterized protein OS=Oryza...    87   4e-16
tr|Q2WCC2|Q2WCC2_COCNU Putative uncharacterized protein (Fragmen...    86   9e-16
tr|A7PM52|A7PM52_VITVI Chromosome chr14 scaffold_21, whole genom...    86   1e-15
tr|Q9LYK5|Q9LYK5_ARATH Putative uncharacterized protein T15N1_30...    83   8e-15
tr|Q8L7D7|Q8L7D7_ARATH Putative uncharacterized protein At5g1454...    83   8e-15
tr|A9SUX7|A9SUX7_PHYPA Predicted protein OS=Physcomitrella paten...    80   7e-14
tr|Q0DKE7|Q0DKE7_ORYSJ Os05g0169400 protein OS=Oryza sativa subs...    79   1e-13
tr|A3B0D5|A3B0D5_ORYSJ Putative uncharacterized protein OS=Oryza...    79   1e-13
tr|A2Y0T7|A2Y0T7_ORYSI Putative uncharacterized protein OS=Oryza...    79   1e-13
tr|A5AN05|A5AN05_VITVI Putative uncharacterized protein OS=Vitis...    78   2e-13
tr|A9U122|A9U122_PHYPA Predicted protein OS=Physcomitrella paten...    77   3e-13
tr|Q9SS99|Q9SS99_ARATH F4P13.11 protein OS=Arabidopsis thaliana ...    74   4e-12
tr|B6SV28|B6SV28_MAIZE Proline-rich protein OS=Zea mays PE=2 SV=1      69   2e-10
tr|B4FQ71|B4FQ71_MAIZE Putative uncharacterized protein OS=Zea m...    69   2e-10
tr|Q5JML5|Q5JML5_ORYSJ cDNA clone:J033066K05, full insert sequen...    56   1e-06
tr|B8A9R2|B8A9R2_ORYSI Putative uncharacterized protein OS=Oryza...    56   1e-06
tr|Q9M0H8|Q9M0H8_ARATH Predicted proline-rich protein OS=Arabido...    51   3e-05
tr|Q8VZR8|Q8VZR8_ARATH Putative proline-rich protein OS=Arabidop...    51   3e-05
tr|Q3E6T9|Q3E6T9_ARATH Uncharacterized protein At4g28300.2 OS=Ar...    51   3e-05
tr|A4RXT0|A4RXT0_OSTLU Predicted protein OS=Ostreococcus lucimar...    41   0.026
tr|A7PJ36|A7PJ36_VITVI Chromosome chr12 scaffold_18, whole genom...    40   0.044
tr|Q018S3|Q018S3_OSTTA Oxalate/formate antiporter (ISS) (Fragmen...    39   0.099
tr|B4JMT3|B4JMT3_DROGR GH24271 OS=Drosophila grimshawi GN=GH2427...    34   3.2  
tr|B4B6J3|B4B6J3_9CHRO Glycosyl transferase family 2 OS=Cyanothe...    33   9.3  
tr|B1QX06|B1QX06_CLOBU Putative uncharacterized protein OS=Clost...    33   9.3  

>tr|A9RVV5|A9RVV5_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_119986 PE=4 SV=1
          Length = 437

 Score = 87.4 bits (215), Expect = 3e-16
 Identities = 40/57 (70%), Positives = 47/57 (82%)
 Frame = -2

Query: 340 DDVIDKVVSMGFHREQVRGVVRHLTENGQSVELNVVLDKLMNDGDSSQPPRGWYNRG 170
           D+VIDKV  MGF ++QVR VVR LTENGQSV+LNVVLDKLMN    +QPP+GW+ RG
Sbjct: 381 DEVIDKVAVMGFSKDQVRAVVRRLTENGQSVDLNVVLDKLMNGDGGAQPPKGWFQRG 437


>tr|Q5VQG6|Q5VQG6_ORYSJ cDNA clone:J023110A06, full insert sequence
           OS=Oryza sativa subsp. japonica GN=OJ1276_B06.36 PE=2
           SV=1
          Length = 580

 Score = 87.0 bits (214), Expect = 4e-16
 Identities = 39/56 (69%), Positives = 46/56 (82%)
 Frame = -2

Query: 340 DDVIDKVVSMGFHREQVRGVVRHLTENGQSVELNVVLDKLMNDGDSSQPPRGWYNR 173
           DDV++KV +MGF REQVR  VR LTENGQ+V+LNVVLDKLMND D  QP +GW+ R
Sbjct: 525 DDVVEKVATMGFSREQVRATVRRLTENGQNVDLNVVLDKLMNDSDVQQPQKGWFGR 580


>tr|Q0JQC8|Q0JQC8_ORYSJ Os01g0169900 protein (Fragment) OS=Oryza
           sativa subsp. japonica GN=Os01g0169900 PE=4 SV=1
          Length = 628

 Score = 87.0 bits (214), Expect = 4e-16
 Identities = 39/56 (69%), Positives = 46/56 (82%)
 Frame = -2

Query: 340 DDVIDKVVSMGFHREQVRGVVRHLTENGQSVELNVVLDKLMNDGDSSQPPRGWYNR 173
           DDV++KV +MGF REQVR  VR LTENGQ+V+LNVVLDKLMND D  QP +GW+ R
Sbjct: 573 DDVVEKVATMGFSREQVRATVRRLTENGQNVDLNVVLDKLMNDSDVQQPQKGWFGR 628


>tr|A2WL57|A2WL57_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_00570 PE=4 SV=1
          Length = 580

 Score = 87.0 bits (214), Expect = 4e-16
 Identities = 39/56 (69%), Positives = 46/56 (82%)
 Frame = -2

Query: 340 DDVIDKVVSMGFHREQVRGVVRHLTENGQSVELNVVLDKLMNDGDSSQPPRGWYNR 173
           DDV++KV +MGF REQVR  VR LTENGQ+V+LNVVLDKLMND D  QP +GW+ R
Sbjct: 525 DDVVEKVATMGFSREQVRATVRRLTENGQNVDLNVVLDKLMNDSDVQQPQKGWFGR 580


>tr|Q2WCC2|Q2WCC2_COCNU Putative uncharacterized protein (Fragment)
           OS=Cocos nucifera PE=2 SV=1
          Length = 120

 Score = 85.9 bits (211), Expect = 9e-16
 Identities = 41/56 (73%), Positives = 48/56 (85%)
 Frame = -2

Query: 340 DDVIDKVVSMGFHREQVRGVVRHLTENGQSVELNVVLDKLMNDGDSSQPPRGWYNR 173
           DDV+DKVV+MGF R+QVR  VR LTENGQSV+LNVVLDKLMNDG+  QP +GW+ R
Sbjct: 61  DDVVDKVVTMGFSRDQVRATVRKLTENGQSVDLNVVLDKLMNDGE-IQPQKGWFGR 115


>tr|A7PM52|A7PM52_VITVI Chromosome chr14 scaffold_21, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00020686001
           PE=4 SV=1
          Length = 517

 Score = 85.5 bits (210), Expect = 1e-15
 Identities = 41/56 (73%), Positives = 47/56 (83%)
 Frame = -2

Query: 340 DDVIDKVVSMGFHREQVRGVVRHLTENGQSVELNVVLDKLMNDGDSSQPPRGWYNR 173
           DDV+DKV +MGF R+ VR  VR LTENGQSV+LNVVLDKLMNDG+  QPPRGW+ R
Sbjct: 463 DDVVDKVTNMGFPRDVVRATVRKLTENGQSVDLNVVLDKLMNDGE-VQPPRGWFGR 517


>tr|Q9LYK5|Q9LYK5_ARATH Putative uncharacterized protein T15N1_30
           OS=Arabidopsis thaliana GN=T15N1_30 PE=4 SV=1
          Length = 530

 Score = 82.8 bits (203), Expect = 8e-15
 Identities = 44/62 (70%), Positives = 48/62 (77%), Gaps = 8/62 (12%)
 Frame = -2

Query: 340 DDVIDKVVSMGFHREQVRGVVRHLTENGQSVELNVVLDKLMNDGD--------SSQPPRG 185
           DDVIDKVVSMGF R+QVRG VR LTENGQ+V+LNVVLDKLMN GD          QPPRG
Sbjct: 467 DDVIDKVVSMGFPRDQVRGTVRTLTENGQAVDLNVVLDKLMN-GDRGAMMQQQQQQPPRG 525

Query: 184 WY 179
           W+
Sbjct: 526 WF 527


>tr|Q8L7D7|Q8L7D7_ARATH Putative uncharacterized protein At5g14540
           OS=Arabidopsis thaliana GN=At5g14540 PE=2 SV=1
          Length = 357

 Score = 82.8 bits (203), Expect = 8e-15
 Identities = 44/62 (70%), Positives = 48/62 (77%), Gaps = 8/62 (12%)
 Frame = -2

Query: 340 DDVIDKVVSMGFHREQVRGVVRHLTENGQSVELNVVLDKLMNDGD--------SSQPPRG 185
           DDVIDKVVSMGF R+QVRG VR LTENGQ+V+LNVVLDKLMN GD          QPPRG
Sbjct: 294 DDVIDKVVSMGFPRDQVRGTVRTLTENGQAVDLNVVLDKLMN-GDRGAMMQQQQQQPPRG 352

Query: 184 WY 179
           W+
Sbjct: 353 WF 354


>tr|A9SUX7|A9SUX7_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_188651 PE=4 SV=1
          Length = 403

 Score = 79.7 bits (195), Expect = 7e-14
 Identities = 43/62 (69%), Positives = 47/62 (75%), Gaps = 6/62 (9%)
 Frame = -2

Query: 340 DDVIDKVVSMGFHREQVRGVVRHLTENGQSVELNVVLDKLMNDGDSS------QPPRGWY 179
           D+VIDKV SMGF R+QVR  VR LTENG SV+LNVVLDKLMN GDSS      QP +GWY
Sbjct: 343 DEVIDKVASMGFGRDQVRATVRKLTENGTSVDLNVVLDKLMN-GDSSGRNESQQPAKGWY 401

Query: 178 NR 173
            R
Sbjct: 402 GR 403


>tr|Q0DKE7|Q0DKE7_ORYSJ Os05g0169400 protein OS=Oryza sativa subsp.
           japonica GN=Os05g0169400 PE=4 SV=1
          Length = 461

 Score = 79.0 bits (193), Expect = 1e-13
 Identities = 37/56 (66%), Positives = 46/56 (82%)
 Frame = -2

Query: 340 DDVIDKVVSMGFHREQVRGVVRHLTENGQSVELNVVLDKLMNDGDSSQPPRGWYNR 173
           DDV+DKV +MGF REQVR  VR LTE+GQ+V+LN+VLDK+MN  D +QP RGW+ R
Sbjct: 407 DDVVDKVATMGFSREQVRAAVRQLTESGQNVDLNMVLDKVMNGAD-AQPQRGWHGR 461