NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | ダウンロード | 利用許諾 | ヘルプ
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP911799
Clone id YMU001_000009_C10
Library
Length 481
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000009_C10.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
ACATGCTACACGGNCAACAAAGGCATGAGTGTAATTGATTATGTATTGATTGCATATGAG
GCATCCCATATTGTAAGTAATTTCATAATTGGGAAGAGGTCACCCAATTCGGACCACACC
CCAATCCATGTATGGCTACAAGTTCCCACTCAAAAAGCACAAGAACAGCCCCATGCCCGA
TCATGGACATACAAAATGCAAGTGGACAAGAAAAGAATGTATGCAGAACATCTAGACAAT
GCACTTGCTCATATACCCATGCCATCACACATTGAACAAGCATGGCCAATTTTCAAACAA
GCTCTATGTGACGCCGTGGAACAAACAATGGGAAAAACGCATCGGCGGGGAAATCATGTT
AAAGGGCTACCGCATAACCCATGGTTTGATGAAGAGTGTAAGTATGTAAAAAAACAATTG
TGGGCACTGTCAACGACGAACACAGAATGGGAAACTCTATCAAAAGACTACACAAATCTC
A
■■Homology search results ■■ -
sp_hit_id P04933
Definition sp|P04933|MSP1_PLAFW Merozoite surface protein 1 OS=Plasmodium falciparum (isolate Wellcome)
Align length 64
Score (bit) 35.0
E-value 0.16
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP911799|Adiantum capillus-veneris mRNA, clone:
YMU001_000009_C10.
         (466 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P04933|MSP1_PLAFW Merozoite surface protein 1 OS=Plasmodium f...    35   0.16 
sp|P04932|MSP1_PLAFK Merozoite surface protein 1 OS=Plasmodium f...    35   0.16 
sp|Q2NTS9|UVRC_SODGM UvrABC system protein C OS=Sodalis glossini...    30   5.2  
sp|P0AGA5|SECY_SHIFL Preprotein translocase subunit secY OS=Shig...    30   6.8  
sp|P0AGA2|SECY_ECOLI Preprotein translocase subunit secY OS=Esch...    30   6.8  
sp|P0AGA3|SECY_ECOL6 Preprotein translocase subunit secY OS=Esch...    30   6.8  
sp|P0AGA4|SECY_ECO57 Preprotein translocase subunit secY OS=Esch...    30   6.8  
sp|Q557I1|NFYC_DICDI Nuclear transcription factor Y subunit gamm...    30   6.8  
sp|Q5PNS0|Y3228_ARATH PHD finger protein At3g20280 OS=Arabidopsi...    29   8.9  
sp|P49976|SECY_BUCAK Preprotein translocase subunit secY (Fragme...    29   8.9  
sp|A7MY21|RNH_VIBHB Ribonuclease H OS=Vibrio harveyi (strain ATC...    29   8.9  
sp|Q7TQ32|RGMC_MOUSE Hemojuvelin OS=Mus musculus GN=Hfe2 PE=2 SV=1     29   8.9  
sp|Q9Z2X5|HOME3_RAT Homer protein homolog 3 OS=Rattus norvegicus...    29   8.9  
sp|A1VZR4|ARLY_CAMJJ Argininosuccinate lyase OS=Campylobacter je...    29   8.9  

>sp|P04933|MSP1_PLAFW Merozoite surface protein 1 OS=Plasmodium
            falciparum (isolate Wellcome) GN=MSP-1 PE=1 SV=2
          Length = 1639

 Score = 35.0 bits (79), Expect = 0.16
 Identities = 21/64 (32%), Positives = 31/64 (48%), Gaps = 4/64 (6%)
 Frame = +1

Query: 190  YKMQVDKKRMYAEHLDNALAHIPMPSHIEQAWPIF----KQALCDAVEQTMGKTHRRGNH 357
            YKMQ+ K  +  E L++ L  +  P H+ Q + +F    K+A     E T+  T     H
Sbjct: 1028 YKMQIKKLTLLKEQLESKLNSLNNPKHVLQNFSVFFNKKKEAEIAETENTLENTKILLKH 1087

Query: 358  VKGL 369
             KGL
Sbjct: 1088 YKGL 1091


>sp|P04932|MSP1_PLAFK Merozoite surface protein 1 OS=Plasmodium
            falciparum (isolate K1 / Thailand) GN=MSP-1 PE=3 SV=2
          Length = 1630

 Score = 35.0 bits (79), Expect = 0.16
 Identities = 21/64 (32%), Positives = 31/64 (48%), Gaps = 4/64 (6%)
 Frame = +1

Query: 190  YKMQVDKKRMYAEHLDNALAHIPMPSHIEQAWPIF----KQALCDAVEQTMGKTHRRGNH 357
            YKMQ+ K  +  E L++ L  +  P H+ Q + +F    K+A     E T+  T     H
Sbjct: 1019 YKMQIKKLTLLKEQLESKLNSLNNPKHVLQNFSVFFNKKKEAEIAETENTLENTKILLKH 1078

Query: 358  VKGL 369
             KGL
Sbjct: 1079 YKGL 1082


>sp|Q2NTS9|UVRC_SODGM UvrABC system protein C OS=Sodalis
           glossinidius (strain morsitans) GN=uvrC PE=3 SV=1
          Length = 610

 Score = 30.0 bits (66), Expect = 5.2
 Identities = 17/69 (24%), Positives = 32/69 (46%)
 Frame = -1

Query: 292 KLAMLVQCVMAWVYEQVHCLDVLHTFFSCPLAFCMSMIGHGAVLVLFEWELVAIHGLGCG 113
           +LA L + +      ++ C D+ HT     +A C+   G+G+V    E+    I G+  G
Sbjct: 379 RLAALAELLGIQAINRMECFDISHTMGEHTIASCVIFDGNGSVRA--EYRRYNIEGITPG 436

Query: 112 PNWVTSSQL 86
            ++    Q+
Sbjct: 437 DDYAAMDQV 445


>sp|P0AGA5|SECY_SHIFL Preprotein translocase subunit secY
           OS=Shigella flexneri GN=secY PE=3 SV=1
          Length = 443

 Score = 29.6 bits (65), Expect = 6.8
 Identities = 28/96 (29%), Positives = 39/96 (40%)
 Frame = -1

Query: 346 ADAFFPLFVPRRHIELV*KLAMLVQCVMAWVYEQVHCLDVLHTFFSCPLAFCMSMIGHGA 167
           A  FF +FV R    +V   A   Q    +  +  H    ++     P  F  S+I    
Sbjct: 229 AVTFFVVFVERGQRRIVVNYAKRQQGRRVYAAQSTHLPLKVNMAGVIPAIFASSII---- 284

Query: 166 VLVLFEWELVAIHGLGCGPNWVTSSQL*NYLQYGMP 59
              LF   + +  G G G NW+T+  L  YLQ G P
Sbjct: 285 ---LFPATIASWFGGGTGWNWLTTISL--YLQPGQP 315


>sp|P0AGA2|SECY_ECOLI Preprotein translocase subunit secY
           OS=Escherichia coli (strain K12) GN=secY PE=1 SV=1
          Length = 443

 Score = 29.6 bits (65), Expect = 6.8
 Identities = 28/96 (29%), Positives = 39/96 (40%)
 Frame = -1

Query: 346 ADAFFPLFVPRRHIELV*KLAMLVQCVMAWVYEQVHCLDVLHTFFSCPLAFCMSMIGHGA 167
           A  FF +FV R    +V   A   Q    +  +  H    ++     P  F  S+I    
Sbjct: 229 AVTFFVVFVERGQRRIVVNYAKRQQGRRVYAAQSTHLPLKVNMAGVIPAIFASSII---- 284

Query: 166 VLVLFEWELVAIHGLGCGPNWVTSSQL*NYLQYGMP 59
              LF   + +  G G G NW+T+  L  YLQ G P
Sbjct: 285 ---LFPATIASWFGGGTGWNWLTTISL--YLQPGQP 315


>sp|P0AGA3|SECY_ECOL6 Preprotein translocase subunit secY
           OS=Escherichia coli O6 GN=secY PE=3 SV=1
          Length = 443

 Score = 29.6 bits (65), Expect = 6.8
 Identities = 28/96 (29%), Positives = 39/96 (40%)
 Frame = -1

Query: 346 ADAFFPLFVPRRHIELV*KLAMLVQCVMAWVYEQVHCLDVLHTFFSCPLAFCMSMIGHGA 167
           A  FF +FV R    +V   A   Q    +  +  H    ++     P  F  S+I    
Sbjct: 229 AVTFFVVFVERGQRRIVVNYAKRQQGRRVYAAQSTHLPLKVNMAGVIPAIFASSII---- 284

Query: 166 VLVLFEWELVAIHGLGCGPNWVTSSQL*NYLQYGMP 59
              LF   + +  G G G NW+T+  L  YLQ G P
Sbjct: 285 ---LFPATIASWFGGGTGWNWLTTISL--YLQPGQP 315


>sp|P0AGA4|SECY_ECO57 Preprotein translocase subunit secY
           OS=Escherichia coli O157:H7 GN=secY PE=3 SV=1
          Length = 443

 Score = 29.6 bits (65), Expect = 6.8
 Identities = 28/96 (29%), Positives = 39/96 (40%)
 Frame = -1

Query: 346 ADAFFPLFVPRRHIELV*KLAMLVQCVMAWVYEQVHCLDVLHTFFSCPLAFCMSMIGHGA 167
           A  FF +FV R    +V   A   Q    +  +  H    ++     P  F  S+I    
Sbjct: 229 AVTFFVVFVERGQRRIVVNYAKRQQGRRVYAAQSTHLPLKVNMAGVIPAIFASSII---- 284

Query: 166 VLVLFEWELVAIHGLGCGPNWVTSSQL*NYLQYGMP 59
              LF   + +  G G G NW+T+  L  YLQ G P
Sbjct: 285 ---LFPATIASWFGGGTGWNWLTTISL--YLQPGQP 315


>sp|Q557I1|NFYC_DICDI Nuclear transcription factor Y subunit gamma
           OS=Dictyostelium discoideum GN=nfyc-1 PE=3 SV=1
          Length = 684

 Score = 29.6 bits (65), Expect = 6.8
 Identities = 15/70 (21%), Positives = 31/70 (44%)
 Frame = +1

Query: 79  NFIIGKRSPNSDHTPIHVWLQVPTQKAQEQPHARSWTYKMQVDKKRMYAEHLDNALAHIP 258
           NF   + + N         LQ   Q+ Q+Q   +    + Q  +++ +++ +   + HIP
Sbjct: 468 NFQYNENNHNQSSLSQTQQLQQLNQQQQQQQQQQQQQQQQQQQQQQQHSQQISQQIHHIP 527

Query: 259 MPSHIEQAWP 288
            PS+   + P
Sbjct: 528 TPSNSSSSLP 537


>sp|Q5PNS0|Y3228_ARATH PHD finger protein At3g20280 OS=Arabidopsis
           thaliana GN=At3g20280 PE=2 SV=1
          Length = 482

 Score = 29.3 bits (64), Expect = 8.9
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +1

Query: 304 LCDAVEQTMGKTHRRGNHVKGLPHNPWFDEEC 399
           +CDA E+       +GN++KG+P + W    C
Sbjct: 63  ICDACEKAYHLKCLQGNNMKGVPKSEWHCSRC 94


>sp|P49976|SECY_BUCAK Preprotein translocase subunit secY (Fragment)
           OS=Buchnera aphidicola subsp. Acyrthosiphon kondoi
           GN=secY PE=3 SV=1
          Length = 356

 Score = 29.3 bits (64), Expect = 8.9
 Identities = 27/96 (28%), Positives = 39/96 (40%)
 Frame = -1

Query: 346 ADAFFPLFVPRRHIELV*KLAMLVQCVMAWVYEQVHCLDVLHTFFSCPLAFCMSMIGHGA 167
           A  FF +F+ R    +V   A   Q    +  +  H    ++     P  F  S+I    
Sbjct: 229 AVTFFVVFIERGQRRIVVNYAKRQQGRRVYAAQSTHLPLKVNMAGVIPAIFASSII---- 284

Query: 166 VLVLFEWELVAIHGLGCGPNWVTSSQL*NYLQYGMP 59
              LF   + +  G G G NW+T+  L  YLQ G P
Sbjct: 285 ---LFPATIASWFGGGTGWNWLTTVSL--YLQPGQP 315
tr_hit_id B6PPA3
Definition tr|B6PPA3|B6PPA3_BRAFL Putative uncharacterized protein OS=Branchiostoma floridae
Align length 83
Score (bit) 43.9
E-value 0.004
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP911799|Adiantum capillus-veneris mRNA, clone:
YMU001_000009_C10.
         (466 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B6PPA3|B6PPA3_BRAFL Putative uncharacterized protein OS=Branc...    44   0.004
tr|B6LAN9|B6LAN9_BRAFL Putative uncharacterized protein OS=Branc...    44   0.004
tr|Q9NAT3|Q9NAT3_PLAFA Merozoite surface protein 1 (Fragment) OS...    35   1.9  
tr|Q6LBT0|Q6LBT0_PLAFA Gp195 surface antigen preprotein (Merozoi...    35   1.9  
tr|A5A7C4|A5A7C4_PLAFA Merozoite surface protein-1 OS=Plasmodium...    35   1.9  
tr|A5A7B1|A5A7B1_PLAFA Merozoite surface protein-1 OS=Plasmodium...    35   1.9  
tr|A5A7A8|A5A7A8_PLAFA Merozoite surface protein-1 OS=Plasmodium...    35   1.9  
tr|A9L6R4|A9L6R4_SHEB9 CagE TrbE VirB component of type IV trans...    34   4.2  
tr|Q6AV71|Q6AV71_ORYSJ Transposase family protein (Transposon pr...    33   5.5  
tr|Q2QV34|Q2QV34_ORYSJ Transposon protein, putative, CACTA, En/S...    33   5.5  

>tr|B6PPA3|B6PPA3_BRAFL Putative uncharacterized protein
           OS=Branchiostoma floridae GN=BRAFLDRAFT_109345 PE=4 SV=1
          Length = 415

 Score = 43.9 bits (102), Expect = 0.004
 Identities = 23/83 (27%), Positives = 39/83 (46%)
 Frame = +1

Query: 202 VDKKRMYAEHLDNALAHIPMPSHIEQAWPIFKQALCDAVEQTMGKTHRRGNHVKGLPHNP 381
           V+ K + A +L   +  +P  S+ E+AW  F++ + D  E+T+G T R+        H  
Sbjct: 263 VETKEVLARNLREQIKKLPAESNPEKAWGNFRKVMYDTSERTLGHTKRK--------HQD 314

Query: 382 WFDEECKYVKKQLWALSTTNTEW 450
           WFD   + +   L       T+W
Sbjct: 315 WFDNNNEEITSLLKKKQEAFTQW 337


>tr|B6LAN9|B6LAN9_BRAFL Putative uncharacterized protein
           OS=Branchiostoma floridae GN=BRAFLDRAFT_68228 PE=4 SV=1
          Length = 605

 Score = 43.9 bits (102), Expect = 0.004
 Identities = 23/83 (27%), Positives = 39/83 (46%)
 Frame = +1

Query: 202 VDKKRMYAEHLDNALAHIPMPSHIEQAWPIFKQALCDAVEQTMGKTHRRGNHVKGLPHNP 381
           V+ K + A +L   +  +P  S+ E+AW  F++ + D  E+T+G T R+        H  
Sbjct: 363 VETKEVLARNLREQIKKLPAESNPEKAWGNFRKVMYDTSERTLGHTKRK--------HQD 414

Query: 382 WFDEECKYVKKQLWALSTTNTEW 450
           WFD   + +   L       T+W
Sbjct: 415 WFDNNNEEITSLLKKKQEAFTQW 437


>tr|Q9NAT3|Q9NAT3_PLAFA Merozoite surface protein 1 (Fragment)
           OS=Plasmodium falciparum GN=msp-1 PE=2 SV=1
          Length = 360

 Score = 35.0 bits (79), Expect = 1.9
 Identities = 21/64 (32%), Positives = 31/64 (48%), Gaps = 4/64 (6%)
 Frame = +1

Query: 190 YKMQVDKKRMYAEHLDNALAHIPMPSHIEQAWPIF----KQALCDAVEQTMGKTHRRGNH 357
           YKMQ+ K  +  E L++ L  +  P H+ Q + +F    K+A     E T+  T     H
Sbjct: 127 YKMQIKKLTLLKEQLESKLNSLNNPKHVLQNFSVFFNKKKEAEIAETENTLENTKILLKH 186

Query: 358 VKGL 369
            KGL
Sbjct: 187 YKGL 190


>tr|Q6LBT0|Q6LBT0_PLAFA Gp195 surface antigen preprotein (Merozoite
            surface protein-1) OS=Plasmodium falciparum GN=msp1 PE=2
            SV=1
          Length = 1639

 Score = 35.0 bits (79), Expect = 1.9
 Identities = 21/64 (32%), Positives = 31/64 (48%), Gaps = 4/64 (6%)
 Frame = +1

Query: 190  YKMQVDKKRMYAEHLDNALAHIPMPSHIEQAWPIF----KQALCDAVEQTMGKTHRRGNH 357
            YKMQ+ K  +  E L++ L  +  P H+ Q + +F    K+A     E T+  T     H
Sbjct: 1028 YKMQIKKLTLLKEQLESKLNSLNNPKHVLQNFSVFFNKKKEAEIAETENTLENTKILLKH 1087

Query: 358  VKGL 369
             KGL
Sbjct: 1088 YKGL 1091


>tr|A5A7C4|A5A7C4_PLAFA Merozoite surface protein-1 OS=Plasmodium
            falciparum GN=msp1 PE=4 SV=1
          Length = 1627

 Score = 35.0 bits (79), Expect = 1.9
 Identities = 21/64 (32%), Positives = 31/64 (48%), Gaps = 4/64 (6%)
 Frame = +1

Query: 190  YKMQVDKKRMYAEHLDNALAHIPMPSHIEQAWPIF----KQALCDAVEQTMGKTHRRGNH 357
            YKMQ+ K  +  E L++ L  +  P H+ Q + +F    K+A     E T+  T     H
Sbjct: 1016 YKMQIKKLTLLKEQLESKLNSLNNPKHVLQNFSVFFNKKKEAEIAETENTLENTKILLKH 1075

Query: 358  VKGL 369
             KGL
Sbjct: 1076 YKGL 1079


>tr|A5A7B1|A5A7B1_PLAFA Merozoite surface protein-1 OS=Plasmodium
            falciparum GN=msp1 PE=4 SV=1
          Length = 1633

 Score = 35.0 bits (79), Expect = 1.9
 Identities = 21/64 (32%), Positives = 31/64 (48%), Gaps = 4/64 (6%)
 Frame = +1

Query: 190  YKMQVDKKRMYAEHLDNALAHIPMPSHIEQAWPIF----KQALCDAVEQTMGKTHRRGNH 357
            YKMQ+ K  +  E L++ L  +  P H+ Q + +F    K+A     E T+  T     H
Sbjct: 1022 YKMQIKKLTLLKEQLESKLNSLNNPKHVLQNFSVFFNKKKEAEIAETENTLENTKILLKH 1081

Query: 358  VKGL 369
             KGL
Sbjct: 1082 YKGL 1085


>tr|A5A7A8|A5A7A8_PLAFA Merozoite surface protein-1 OS=Plasmodium
            falciparum GN=msp1 PE=4 SV=1
          Length = 1627

 Score = 35.0 bits (79), Expect = 1.9
 Identities = 21/64 (32%), Positives = 31/64 (48%), Gaps = 4/64 (6%)
 Frame = +1

Query: 190  YKMQVDKKRMYAEHLDNALAHIPMPSHIEQAWPIF----KQALCDAVEQTMGKTHRRGNH 357
            YKMQ+ K  +  E L++ L  +  P H+ Q + +F    K+A     E T+  T     H
Sbjct: 1016 YKMQIKKLTLLKEQLESKLNSLNNPKHVLQNFSVFFYKKKEAEIAETENTLENTKILLKH 1075

Query: 358  VKGL 369
             KGL
Sbjct: 1076 YKGL 1079


>tr|A9L6R4|A9L6R4_SHEB9 CagE TrbE VirB component of type IV
           transporter system OS=Shewanella baltica (strain OS195)
           GN=Sbal195_4692 PE=4 SV=1
          Length = 808

 Score = 33.9 bits (76), Expect = 4.2
 Identities = 19/67 (28%), Positives = 34/67 (50%)
 Frame = +1

Query: 142 VPTQKAQEQPHARSWTYKMQVDKKRMYAEHLDNALAHIPMPSHIEQAWPIFKQALCDAVE 321
           +P  KAQ Q   R W ++  +DKK ++++HLD+    +   S   Q++   ++ L     
Sbjct: 129 MPPSKAQAQ--IRDWMFEDSLDKKSLFSKHLDDFQRKLRDISSRLQSYISIRRLLAYKAR 186

Query: 322 QTMGKTH 342
              G+TH
Sbjct: 187 NDEGETH 193


>tr|Q6AV71|Q6AV71_ORYSJ Transposase family protein (Transposon
           protein, putative, CACTA, En/Spm sub-class, expressed)
           OS=Oryza sativa subsp. japonica GN=OSJNBa0035N15.8 PE=4
           SV=1
          Length = 819

 Score = 33.5 bits (75), Expect = 5.5
 Identities = 16/62 (25%), Positives = 29/62 (46%)
 Frame = +1

Query: 208 KKRMYAEHLDNALAHIPMPSHIEQAWPIFKQALCDAVEQTMGKTHRRGNHVKGLPHNPWF 387
           +KR+ A+    A AH  +  H+ +  P F++ L    +  +G++    N   G   N WF
Sbjct: 678 RKRIVADQASYAQAHFAVLQHMAEVTPYFEEHLAKVRQDNIGRSDIWINKEHGARFNEWF 737

Query: 388 DE 393
            +
Sbjct: 738 KD 739


>tr|Q2QV34|Q2QV34_ORYSJ Transposon protein, putative, CACTA, En/Spm
           sub-class OS=Oryza sativa subsp. japonica
           GN=LOC_Os12g14180 PE=4 SV=1
          Length = 945

 Score = 33.5 bits (75), Expect = 5.5
 Identities = 16/63 (25%), Positives = 28/63 (44%)
 Frame = +1

Query: 205 DKKRMYAEHLDNALAHIPMPSHIEQAWPIFKQALCDAVEQTMGKTHRRGNHVKGLPHNPW 384
           D+KR+  +    A AH  +  H+ +  P F++ L    +  +G +    N   G   N W
Sbjct: 688 DRKRIVPDQASYAQAHFAVLQHMAEVTPYFEEHLAKVRQDNIGPSDILINREHGARFNEW 747

Query: 385 FDE 393
           F +
Sbjct: 748 FKD 750