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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP911800
Clone id YMU001_000009_C11
Library
Length 545
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000009_C11.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
TATTACCTGCAGGTACTCCCCTCGCTGCTGCGCCTGCCTCTAGCAACTGTCGGCTGCTCG
ATTTCACCTACTTGGCTCTATTTACTCAGTGCTGCCCAAATTCCCAATTCCAAGCTCGTT
GCTCGCTAGGTTGTCTCAATTGCCCTACTGCAGTGTGTATGTGTGTGTGTAATACCACAT
CCAACAGCTTGCTGCTGCTTTTACTGTAGCGCTGCTCGACAGTGCCCGGGTCTCAATTTC
AAATTCCCCCTTGGACCTTATTGCTCAAGGGCACGTGGCTACTCCCGAGGTGCTCAACAC
TACCCGGGTCTTGATTGCTTACTTGCTATCGAATGCCTTCAAGGCTTACATCCGATTCAC
TTCAGCCCCTTCAATTGCTCGACTGTGCCCACAACGACTTCACCTGCTCGAGAGCTGTTG
GCTGCCCCTTCAATTGCTCGACTGACTTCCCCTCCTTGCTTGAATTCTCTGCTCAATTCT
TCAATCCCCCTACAGGCTTCATTTTGCAAGCTCCTCTCCTCTCGGCTATATCTACTCCTT
AAGCT
■■Homology search results ■■ -
sp_hit_id P49840
Definition sp|P49840|GSK3A_HUMAN Glycogen synthase kinase-3 alpha OS=Homo sapiens
Align length 102
Score (bit) 31.6
E-value 2.6
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP911800|Adiantum capillus-veneris mRNA, clone:
YMU001_000009_C11.
         (545 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P49840|GSK3A_HUMAN Glycogen synthase kinase-3 alpha OS=Homo s...    32   2.6  
sp|O16102|CHD3_DROME Chromodomain-helicase-DNA-binding protein 3...    32   2.6  
sp|P52769|ACCD_PINTH Acetyl-coenzyme A carboxylase carboxyl tran...    32   2.6  
sp|Q8N7S2|DNJ5G_HUMAN DnaJ homolog subfamily C member 5G OS=Homo...    30   5.8  
sp|Q03MY0|MUTL_STRTD DNA mismatch repair protein mutL OS=Strepto...    30   9.9  
sp|Q5M6H7|MUTL_STRT2 DNA mismatch repair protein mutL OS=Strepto...    30   9.9  
sp|Q5M1Y6|MUTL_STRT1 DNA mismatch repair protein mutL OS=Strepto...    30   9.9  

>sp|P49840|GSK3A_HUMAN Glycogen synthase kinase-3 alpha OS=Homo
           sapiens GN=GSK3A PE=1 SV=2
          Length = 483

 Score = 31.6 bits (70), Expect = 2.6
 Identities = 29/102 (28%), Positives = 39/102 (38%)
 Frame = +3

Query: 234 QFQIPPWTLLLKGTWLLPRCSTLPGS*LLTCYRMPSRLTSDSLQPLQLLDCAHNDFTCSR 413
           Q +  PWT + K        S  P   +  C  +     S  L PL+   CAH+ F   R
Sbjct: 358 QIKAHPWTKVFK--------SRTPPEAIALCSSLLEYTPSSRLSPLEA--CAHSFFDELR 407

Query: 414 AVGCPFNCSTDFPSLLEFSAQFFNPPTGFILQAPLLSAISTP 539
            +G     +   P L  FSA       G +   P L+AI  P
Sbjct: 408 CLGTQLPNNRPLPPLFNFSA-------GELSIQPSLNAILIP 442


>sp|O16102|CHD3_DROME Chromodomain-helicase-DNA-binding protein 3
           OS=Drosophila melanogaster GN=Chd3 PE=2 SV=3
          Length = 892

 Score = 31.6 bits (70), Expect = 2.6
 Identities = 15/47 (31%), Positives = 19/47 (40%)
 Frame = +3

Query: 168 CNTTSNSXXXXXXXRCSTVPGSQFQIPPWTLLLKGTWLLPRCSTLPG 308
           C   S+         C +V       PP   + KG W+ PRC  LPG
Sbjct: 38  CKVCSDGGDLLCCDSCPSVYHRTCLSPPLKSIPKGDWICPRCIPLPG 84


>sp|P52769|ACCD_PINTH Acetyl-coenzyme A carboxylase carboxyl
           transferase subunit beta OS=Pinus thunbergii GN=accD
           PE=3 SV=1
          Length = 321

 Score = 31.6 bits (70), Expect = 2.6
 Identities = 16/44 (36%), Positives = 21/44 (47%)
 Frame = -2

Query: 505 KMKPVGGLKN*AENSSKEGKSVEQLKGQPTALEQVKSLWAQSSN 374
           K K    LKN  E  SK+    E+ K +     ++K LWAQ  N
Sbjct: 10  KRKITALLKNSVERDSKDANETEKNKNKSIDYAKIKKLWAQCDN 53


>sp|Q8N7S2|DNJ5G_HUMAN DnaJ homolog subfamily C member 5G OS=Homo
           sapiens GN=DNAJC5G PE=2 SV=1
          Length = 189

 Score = 30.4 bits (67), Expect = 5.8
 Identities = 13/33 (39%), Positives = 15/33 (45%)
 Frame = +1

Query: 130 VVSIALLQCVCVCVIPHPTACCCFYCSAARQCP 228
           V+   LL C C C       CCCF C A +  P
Sbjct: 128 VILCTLLTCCCFC------CCCCFCCGALKPPP 154


>sp|Q03MY0|MUTL_STRTD DNA mismatch repair protein mutL
           OS=Streptococcus thermophilus (strain ATCC BAA-491 /
           LMD-9) GN=mutL PE=3 SV=1
          Length = 647

 Score = 29.6 bits (65), Expect = 9.9
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = +2

Query: 230 VSISNSPLDLIAQGHVATPEVLNTTRVLIAYLLSNAF 340
           V ISNS LD    G+V+ PE+    R  I  L++  +
Sbjct: 222 VEISNSDLDFEVSGYVSLPELTRANRNYITILINGRY 258


>sp|Q5M6H7|MUTL_STRT2 DNA mismatch repair protein mutL
           OS=Streptococcus thermophilus (strain ATCC BAA-250 / LMG
           18311) GN=mutL PE=3 SV=1
          Length = 647

 Score = 29.6 bits (65), Expect = 9.9
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = +2

Query: 230 VSISNSPLDLIAQGHVATPEVLNTTRVLIAYLLSNAF 340
           V ISNS LD    G+V+ PE+    R  I  L++  +
Sbjct: 222 VEISNSDLDFEVSGYVSLPELTRANRNYITILINGRY 258


>sp|Q5M1Y6|MUTL_STRT1 DNA mismatch repair protein mutL
           OS=Streptococcus thermophilus (strain CNRZ 1066) GN=mutL
           PE=3 SV=1
          Length = 647

 Score = 29.6 bits (65), Expect = 9.9
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = +2

Query: 230 VSISNSPLDLIAQGHVATPEVLNTTRVLIAYLLSNAF 340
           V ISNS LD    G+V+ PE+    R  I  L++  +
Sbjct: 222 VEISNSDLDFEVSGYVSLPELTRANRNYITILINGRY 258
tr_hit_id Q4RE82
Definition tr|Q4RE82|Q4RE82_TETNG Chromosome undetermined SCAF15134, whole genome shotgun sequence. (Fragment) OS=Tetraodon nigroviridis
Align length 70
Score (bit) 35.4
E-value 2.0
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP911800|Adiantum capillus-veneris mRNA, clone:
YMU001_000009_C11.
         (545 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q4RE82|Q4RE82_TETNG Chromosome undetermined SCAF15134, whole ...    35   2.0  
tr|Q6GQP2|Q6GQP2_DANRE LOC407704 protein (Fragment) OS=Danio rer...    34   5.8  
tr|A9SJF4|A9SJF4_PHYPA Predicted protein (Fragment) OS=Physcomit...    33   7.6  
tr|Q23JG0|Q23JG0_TETTH Putative uncharacterized protein OS=Tetra...    33   7.6  
tr|A8XI24|A8XI24_CAEBR Putative uncharacterized protein OS=Caeno...    33   7.6  
tr|A9V8P0|A9V8P0_MONBE Predicted protein OS=Monosiga brevicollis...    29   8.2  

>tr|Q4RE82|Q4RE82_TETNG Chromosome undetermined SCAF15134, whole
           genome shotgun sequence. (Fragment) OS=Tetraodon
           nigroviridis GN=GSTENG00035883001 PE=4 SV=1
          Length = 227

 Score = 35.4 bits (80), Expect = 2.0
 Identities = 23/70 (32%), Positives = 32/70 (45%), Gaps = 3/70 (4%)
 Frame = +1

Query: 52  GCSISPTWLYLLSAAQIPNSKLVA--R*VVSIALLQCVCVCVIPHPTACCCFYCSAARQC 225
           G S+     ++L A+Q   S      R ++ + +  CVCVCV     AC C  C   R C
Sbjct: 106 GASVRSDGEHILVASQASTSTSAGGDRRLICVCVCVCVCVCVCVRVCACVC-ACVCVRAC 164

Query: 226 P-GLNFKFPL 252
           P GL    P+
Sbjct: 165 PAGLCSSLPV 174


>tr|Q6GQP2|Q6GQP2_DANRE LOC407704 protein (Fragment) OS=Danio rerio
           GN=LOC407704 PE=2 SV=1
          Length = 462

 Score = 33.9 bits (76), Expect = 5.8
 Identities = 17/39 (43%), Positives = 21/39 (53%), Gaps = 3/39 (7%)
 Frame = +1

Query: 133 VSIALLQCVCVCV-IPHPTACCCFYCSAA--RQCPGLNF 240
           V + +  CVCVCV I     CCC +C  A   +CP L F
Sbjct: 420 VCVCVCVCVCVCVYISSVFCCCCVFCFTAFCERCPLLIF 458


>tr|A9SJF4|A9SJF4_PHYPA Predicted protein (Fragment)
           OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_130819 PE=4 SV=1
          Length = 829

 Score = 33.5 bits (75), Expect = 7.6
 Identities = 23/62 (37%), Positives = 32/62 (51%)
 Frame = +2

Query: 236 ISNSPLDLIAQGHVATPEVLNTTRVLIAYLLSNAFKAYIRFTSAPSIARLCPQRLHLLES 415
           +SN P+ L  Q     PE+L+ TR L+  L   AF  + R T+A  I RLC   L  +E 
Sbjct: 677 LSNEPVVLEFQ----VPELLDLTRRLVMPLAIRAFNNFSRCTAALEILRLCYVMLEDVEK 732

Query: 416 CW 421
            +
Sbjct: 733 LY 734


>tr|Q23JG0|Q23JG0_TETTH Putative uncharacterized protein
           OS=Tetrahymena thermophila SB210 GN=TTHERM_00980960 PE=4
           SV=1
          Length = 1184

 Score = 33.5 bits (75), Expect = 7.6
 Identities = 34/136 (25%), Positives = 45/136 (33%), Gaps = 5/136 (3%)
 Frame = +3

Query: 48  CRLLDFTYLALFTQCCPNSQFQARCSLGCLNCPTAVCMCVCNTTSNSXXXXXXXRCSTVP 227
           C+ L +         CPN QF    S  C NCP     C   T             ++  
Sbjct: 541 CQFLTYLSNGSCVTTCPNGQFADEVSKTCFNCPDGCSSCTSYTNCTGCKSNYIKSLTSCI 600

Query: 228 GSQFQIPPWTLLLKGTWLLPRCSTLPGS*LLTC----YRMPSRLTSDSLQPLQLLDCAHN 395
            S    P  T           C +   +  L+C    Y  PS    DS  PL     +  
Sbjct: 601 NSSCTTPCAT-----------CKSATPTSCLSCAQNLYLQPSSNKCDSSCPLGYYKNS-I 648

Query: 396 DFTCSRAV-GCPFNCS 440
           D TC+  + GC  NC+
Sbjct: 649 DMTCTACLTGCK-NCT 663


>tr|A8XI24|A8XI24_CAEBR Putative uncharacterized protein
           OS=Caenorhabditis briggsae GN=CBG13510 PE=4 SV=2
          Length = 1070

 Score = 33.5 bits (75), Expect = 7.6
 Identities = 16/42 (38%), Positives = 19/42 (45%), Gaps = 2/42 (4%)
 Frame = +1

Query: 154 CVCVCVIPHPTACC--CFYCSAARQCPGLNFKFPLGPYCSRA 273
           C  +   P P  CC     C   +QC  +NFK P  P C RA
Sbjct: 831 CPPIPCCPQPKICCQPTPICLPPQQCCSINFKLPTIPICGRA 872


>tr|A9V8P0|A9V8P0_MONBE Predicted protein OS=Monosiga brevicollis
           GN=33946 PE=4 SV=1
          Length = 514

 Score = 28.9 bits (63), Expect(2) = 8.2
 Identities = 11/24 (45%), Positives = 12/24 (50%)
 Frame = +1

Query: 154 CVCVCVIPHPTACCCFYCSAARQC 225
           CVCVCV     AC C +C     C
Sbjct: 70  CVCVCVCVCVRACVCVWCVCVCVC 93



 Score = 23.1 bits (48), Expect(2) = 8.2
 Identities = 7/17 (41%), Positives = 9/17 (52%)
 Frame = +3

Query: 120 CSLGCLNCPTAVCMCVC 170
           C   C+     VC+CVC
Sbjct: 58  CVRACVRACACVCVCVC 74