BP911807
Clone id YMU001_000009_D07
Library
Length 456
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000009_D07.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence
TTGTTTATTTTTTTTTCTTACAAATCAATCTCTGATTCTCAATACCAAATTGCGGTATGC
TGCAAAAATGTGACGCAATGTGTGACAATGTCCAATATAGTAAAAAATACAGAGCTAATG
ACAAAAGCCCAAGTTATACATTCTGGCTCATCAAGTCTGGCTCACCGCGCACAGTTGGGC
TATAGCGTACATCAGTGCAGGTGCAGACAAAATCTGGCAGCCGCCCAAGTAAGGTTTTCG
GAACAAAAGATCTTATAAGGGCAATAATGCTGCCCGTATGCACTCTCAAAGATTTGAAGC
TATGGAAAATAGAGCACAGTAGCCATATCACGCTACTGTCATCCGCCTATGGAATGTTAG
GCATTACTCTCCTGAGTGACCCAATAATCTTCGATTCTTCCTTTCCCTCGTCGAATGCGA
CATAATTCTTCTCTTCATCATATATGTGACATACTG
■■Homology search results ■■ -
sp_hit_id P46312
Definition sp|P46312|FAD6C_ARATH Omega-6 fatty acid desaturase, chloroplastic OS=Arabidopsis thaliana
Align length 34
Score (bit) 41.6
E-value 0.002
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP911807|Adiantum capillus-veneris mRNA, clone:
YMU001_000009_D07.
(456 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|P46312|FAD6C_ARATH Omega-6 fatty acid desaturase, chloroplast... 42 0.002
sp|P48627|FAD6C_BRANA Omega-6 fatty acid desaturase, chloroplast... 40 0.006
sp|P48629|FAD6C_SPIOL Omega-6 fatty acid desaturase, chloroplast... 37 0.040

>sp|P46312|FAD6C_ARATH Omega-6 fatty acid desaturase, chloroplastic
OS=Arabidopsis thaliana GN=FAD6 PE=1 SV=2
Length = 448

Score = 41.6 bits (96), Expect = 0.002
Identities = 18/34 (52%), Positives = 25/34 (73%), Gaps = 1/34 (2%)
Frame = -3

Query: 454 VCHIYDEEKNYVAFDE-GKEESKIIGSLRRVMPN 356
VCH+YD+E+NY+ FD EES+ I L++ MPN
Sbjct: 412 VCHVYDKEENYIPFDRLAPEESQPITFLKKAMPN 445


>sp|P48627|FAD6C_BRANA Omega-6 fatty acid desaturase, chloroplastic
OS=Brassica napus PE=2 SV=1
Length = 443

Score = 39.7 bits (91), Expect = 0.006
Identities = 17/34 (50%), Positives = 25/34 (73%), Gaps = 1/34 (2%)
Frame = -3

Query: 454 VCHIYDEEKNYVAFDE-GKEESKIIGSLRRVMPN 356
VCH+YD+E+NY+ FD EES+ I L++ MP+
Sbjct: 407 VCHVYDKEENYIPFDRLAPEESQPITFLKKAMPD 440


>sp|P48629|FAD6C_SPIOL Omega-6 fatty acid desaturase, chloroplastic
OS=Spinacia oleracea GN=FAD6 PE=1 SV=1
Length = 447

Score = 37.0 bits (84), Expect = 0.040
Identities = 17/33 (51%), Positives = 25/33 (75%), Gaps = 1/33 (3%)
Frame = -3

Query: 451 CHIYDEEKNYVAFDEG-KEESKIIGSLRRVMPN 356
CHIYD++ NYV+F++ EES+ I +RVMP+
Sbjct: 413 CHIYDKDGNYVSFEKAVPEESQPISIPKRVMPD 445


tr_hit_id A9NV95
Definition tr|A9NV95|A9NV95_PICSI Putative uncharacterized protein OS=Picea sitchensis
Align length 34
Score (bit) 55.5
E-value 1.0e-06
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP911807|Adiantum capillus-veneris mRNA, clone:
YMU001_000009_D07.
(456 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|A9NV95|A9NV95_PICSI Putative uncharacterized protein OS=Picea... 55 1e-06
tr|A9TJT1|A9TJT1_PHYPA Predicted protein OS=Physcomitrella paten... 51 3e-05
tr|A9PGN3|A9PGN3_POPTR Putative uncharacterized protein OS=Popul... 45 0.002
tr|A7XZU9|A7XZU9_9ROSI Chloroplast omega-6 fatty acid desaturase... 44 0.003
tr|Q5U9G0|Q5U9G0_OLEEU Chloroplast fatty acid desaturase 6 OS=Ol... 42 0.012
tr|A9UKE1|A9UKE1_OLEEU Plastidial delta-12 oleate desaturase OS=... 42 0.012
tr|Q09GN7|Q09GN7_DESSO Omega-6 fatty acid desaturase (Chloroplas... 42 0.020
tr|A7R4D1|A7R4D1_VITVI Chromosome undetermined scaffold_653, who... 41 0.026
tr|Q6DUV4|Q6DUV4_BRANA Omega-6 desaturase OS=Brassica napus PE=4... 40 0.076
tr|Q6Z9G4|Q6Z9G4_ORYSJ Putative Omega-6 fatty acid desaturase, c... 38 0.22
tr|Q0J5E5|Q0J5E5_ORYSJ Os08g0440900 protein (Fragment) OS=Oryza ... 38 0.22
tr|B8BB37|B8BB37_ORYSI Putative uncharacterized protein OS=Oryza... 38 0.22
tr|B7E505|B7E505_ORYSJ cDNA clone:001-011-F10, full insert seque... 38 0.22
tr|A3BTJ3|A3BTJ3_ORYSJ Putative uncharacterized protein OS=Oryza... 38 0.22
tr|Q9ZSV6|Q9ZSV6_ACEAT Putative chloroplast desaturase (Fragment... 38 0.29
tr|B6TGK8|B6TGK8_MAIZE Putative uncharacterized protein OS=Zea m... 37 0.38
tr|Q6DUV9|Q6DUV9_BRANA Omega-6 desaturase OS=Brassica napus PE=2... 37 0.64
tr|O48663|O48663_CHLRE Chloroplast w6 desaturase (Omega-6-FAD, c... 36 1.1
tr|Q46JY3|Q46JY3_PROMT ABC-type oligopeptide transport system pe... 34 4.2
tr|Q04Z97|Q04Z97_LEPBL Putative uncharacterized protein OS=Lepto... 34 4.2
tr|Q04QY9|Q04QY9_LEPBJ Putative uncharacterized protein OS=Lepto... 34 4.2
tr|Q240J4|Q240J4_TETTH Putative uncharacterized protein OS=Tetra... 33 5.4
tr|Q171J1|Q171J1_AEDAE Putative uncharacterized protein OS=Aedes... 33 7.1

>tr|A9NV95|A9NV95_PICSI Putative uncharacterized protein OS=Picea
sitchensis PE=2 SV=1
Length = 460

Score = 55.5 bits (132), Expect = 1e-06
Identities = 26/34 (76%), Positives = 29/34 (85%), Gaps = 1/34 (2%)
Frame = -3

Query: 451 CHIYDEEKNYVAFDEG-KEESKIIGSLRRVMPNI 353
CHIYDEE NYVAFDE EESK+IG +RR+MPNI
Sbjct: 426 CHIYDEENNYVAFDEDLPEESKVIGFVRRMMPNI 459


>tr|A9TJT1|A9TJT1_PHYPA Predicted protein OS=Physcomitrella patens
subsp. patens GN=PHYPADRAFT_222981 PE=4 SV=1
Length = 454

Score = 50.8 bits (120), Expect = 3e-05
Identities = 19/33 (57%), Positives = 28/33 (84%)
Frame = -3

Query: 451 CHIYDEEKNYVAFDEGKEESKIIGSLRRVMPNI 353
CH YD EKNY +FD G+++S +IG+LR+VMP++
Sbjct: 421 CHYYDPEKNYTSFDNGEDKSPVIGTLRKVMPDM 453


>tr|A9PGN3|A9PGN3_POPTR Putative uncharacterized protein OS=Populus
trichocarpa PE=2 SV=1
Length = 444

Score = 44.7 bits (104), Expect = 0.002
Identities = 19/34 (55%), Positives = 28/34 (82%), Gaps = 1/34 (2%)
Frame = -3

Query: 454 VCHIYDEEKNYVAFDE-GKEESKIIGSLRRVMPN 356
+CH+YD+E+NYVAFD+ EES+ + L+RVMP+
Sbjct: 409 LCHVYDKEENYVAFDQLAPEESQPVAFLKRVMPD 442


>tr|A7XZU9|A7XZU9_9ROSI Chloroplast omega-6 fatty acid desaturase
OS=Jatropha curcas PE=2 SV=1
Length = 440

Score = 44.3 bits (103), Expect = 0.003
Identities = 19/34 (55%), Positives = 28/34 (82%), Gaps = 1/34 (2%)
Frame = -3

Query: 454 VCHIYDEEKNYVAFDE-GKEESKIIGSLRRVMPN 356
+CH+YD+E+NY+AFD+ EES+ I L+RVMP+
Sbjct: 405 ICHVYDKEQNYIAFDKIAPEESQPIEFLKRVMPD 438


>tr|Q5U9G0|Q5U9G0_OLEEU Chloroplast fatty acid desaturase 6 OS=Olea
europaea subsp. europaea GN=fad6 PE=2 SV=1
Length = 443

Score = 42.4 bits (98), Expect = 0.012
Identities = 18/34 (52%), Positives = 28/34 (82%), Gaps = 1/34 (2%)
Frame = -3

Query: 454 VCHIYDEEKNYVAFDE-GKEESKIIGSLRRVMPN 356
+CH+YD+E+NYVAFDE ++S+ I L++VMP+
Sbjct: 408 ICHVYDKEQNYVAFDELAPKDSQPITFLKKVMPD 441


>tr|A9UKE1|A9UKE1_OLEEU Plastidial delta-12 oleate desaturase
OS=Olea europaea GN=FAD6 PE=2 SV=1
Length = 443

Score = 42.4 bits (98), Expect = 0.012
Identities = 18/34 (52%), Positives = 28/34 (82%), Gaps = 1/34 (2%)
Frame = -3

Query: 454 VCHIYDEEKNYVAFDE-GKEESKIIGSLRRVMPN 356
+CH+YD+E+NYVAFDE ++S+ I L++VMP+
Sbjct: 408 ICHVYDKEQNYVAFDELAPKDSQPITFLKKVMPD 441


>tr|Q09GN7|Q09GN7_DESSO Omega-6 fatty acid desaturase (Chloroplast
delta-12 fatty acid desaturase) OS=Descurainia sophia
GN=FAD6 PE=2 SV=1
Length = 447

Score = 41.6 bits (96), Expect = 0.020
Identities = 18/34 (52%), Positives = 25/34 (73%), Gaps = 1/34 (2%)
Frame = -3

Query: 454 VCHIYDEEKNYVAFDE-GKEESKIIGSLRRVMPN 356
VCH+YD+E+NY+ FD EES+ I L++ MPN
Sbjct: 411 VCHVYDKEENYIPFDRLAPEESQPITFLKKAMPN 444


>tr|A7R4D1|A7R4D1_VITVI Chromosome undetermined scaffold_653, whole
genome shotgun sequence OS=Vitis vinifera
GN=GSVIVT00004305001 PE=4 SV=1
Length = 301

Score = 41.2 bits (95), Expect = 0.026
Identities = 19/34 (55%), Positives = 27/34 (79%), Gaps = 1/34 (2%)
Frame = -3

Query: 454 VCHIYDEEKNYVAFDE-GKEESKIIGSLRRVMPN 356
+CH+Y++E+NYVAFD EES+ I LR+VMP+
Sbjct: 266 MCHVYNKEQNYVAFDNLAPEESQPIVFLRKVMPD 299


>tr|Q6DUV4|Q6DUV4_BRANA Omega-6 desaturase OS=Brassica napus PE=4
SV=1
Length = 443

Score = 39.7 bits (91), Expect = 0.076
Identities = 17/34 (50%), Positives = 25/34 (73%), Gaps = 1/34 (2%)
Frame = -3

Query: 454 VCHIYDEEKNYVAFDE-GKEESKIIGSLRRVMPN 356
VCH+YD+E+NY+ FD EES+ I L++ MP+
Sbjct: 407 VCHVYDKEENYIPFDRLAPEESQPITFLKKAMPD 440


>tr|Q6Z9G4|Q6Z9G4_ORYSJ Putative Omega-6 fatty acid desaturase,
chloroplast OS=Oryza sativa subsp. japonica
GN=P0528B09.19 PE=4 SV=1
Length = 414

Score = 38.1 bits (87), Expect = 0.22
Identities = 17/33 (51%), Positives = 25/33 (75%), Gaps = 1/33 (3%)
Frame = -3

Query: 451 CHIYDEEKNYVAFDE-GKEESKIIGSLRRVMPN 356
CH+YD+++ YV FDE EES+ I L++VMP+
Sbjct: 380 CHVYDKDRYYVPFDEVAPEESQPIKFLKKVMPD 412