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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP911822
Clone id YMU001_000009_E12
Library
Length 497
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000009_E12.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
CATCCTTGTGCTCTTCCTCCTCTTGAGAAATATTCTACTAAGAGGGGTACACATCATTCT
TCTAAGAGGGGTACACATTTTTAACCTTTGGGACTTAACTACATAATTAACCCCCACTTT
TCCCAACAGGAAAGTCAGTAAGAACTTCATGTTTGCACTTCCAAATGATTGTAGGTGCCC
ATCAATTCTCTGCTATAAAAGCTTCAGTCTACGTTCTTCTCAAAATAAAAGTAGTGAATG
ATGAGAAGGTGCAATATTTTTGAGGACACATTTTGATGTGTCTATTGTGCAGTCATCTTC
GAAGGTTTACATGTTGTAACATCCTAATTAAGGTTAAACCTTCTGACACACAAGATGCAG
CAACTTCTGTCACAAATAGGGTTGGATCAAAGTCGAAAGATCACCCGATTTAAGGATGTC
CAAACCACCAGTTTGAACCTTCCTCCATATAGAAACCTGATTGGCAGCTGCAAAACATCC
ATGAAGTGAGCACAATA
■■Homology search results ■■ -
sp_hit_id Q0VCB0
Definition sp|Q0VCB0|ZN350_BOVIN Zinc finger protein 350 OS=Bos taurus
Align length 68
Score (bit) 32.0
E-value 1.6
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP911822|Adiantum capillus-veneris mRNA, clone:
YMU001_000009_E12.
         (497 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q0VCB0|ZN350_BOVIN Zinc finger protein 350 OS=Bos taurus GN=Z...    32   1.6  
sp|Q8TD26|CHD6_HUMAN Chromodomain-helicase-DNA-binding protein 6...    30   6.1  

>sp|Q0VCB0|ZN350_BOVIN Zinc finger protein 350 OS=Bos taurus
           GN=ZNF350 PE=2 SV=1
          Length = 509

 Score = 32.0 bits (71), Expect = 1.6
 Identities = 19/68 (27%), Positives = 34/68 (50%)
 Frame = +1

Query: 244 RRCNIFEDTF*CVYCAVIFEGLHVVTS*LRLNLLTHKMQQLLSQIGLDQSRKITRFKDVQ 423
           +R +  E  + C  C   F G  V    L  +L TH +++L   +   QS  + + K++ 
Sbjct: 381 QRIHTGEKPYRCSKCGKSFRGKSV----LNKHLKTHSVKKLPPSVKSPQSSVVLQEKNLN 436

Query: 424 TTSLNLPP 447
           T +++LPP
Sbjct: 437 TVTMHLPP 444


>sp|Q8TD26|CHD6_HUMAN Chromodomain-helicase-DNA-binding protein 6
           OS=Homo sapiens GN=CHD6 PE=1 SV=3
          Length = 2715

 Score = 30.0 bits (66), Expect = 6.1
 Identities = 16/46 (34%), Positives = 23/46 (50%)
 Frame = +3

Query: 48  YTSFF*EGYTFLTFGT*LHN*PPLFPTGKSVRTSCLHFQMIVGAHQ 185
           Y +   + ++FLT G   HN P L  T   +R  C H  +I GA +
Sbjct: 711 YRAILEKNFSFLTKGANQHNMPNLINTMMELRKCCNHPYLINGAEE 756
tr_hit_id -
Definition No hits.
Align length -
Score (bit) -
E-value -
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP911822|Adiantum capillus-veneris mRNA, clone:
YMU001_000009_E12.
         (497 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done

 ***** No hits found ******