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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP911826
Clone id YMU001_000009_F04
Library
Length 533
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000009_F04.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
ATAATTCCACCTTCTCCCTCCATGGCTCATACTCTAGGACACTAGAACAAAGCTCACACT
TTACAATCCTCCCCTTGGGATTTGGACTAGGAAGAAGCTGAAGAAGCTTGACATCAACTG
ACATCTCTAGCACACTCCAGGAGCAAAAAGAACATCTCCAATCCAGGAGACCATCCCCAA
TCCATGAGATGAACTATCTCTAATCCAAAAGATACTCAAACACCTCCCCTTGAACAAATG
TATAAAATTGAGACCAAGCTAGTCCAAGCTATCTCCAAACAAATACAACTAAAAGGAAAA
GGCAAAACAAAAAGCTAGAGAATGTCATCGTAGACTAGAAGGCTGTTGCCGTCTTCTTCT
TCATCCTCATCTTTGTCTTCTCCTTCCAAATAGTCTTTGGGCCTTGAATTTCTCTTGGTG
CTACCTCTATATTTTTTAAACACTTGGAAGGAAGGTGACCCTTCTTCCCACAAATGTTGC
AAGTCTTTGACGCTAGGCAGTCCTTTGCTATGTGCCCTTCTTTGCCACACTTG
■■Homology search results ■■ -
sp_hit_id P16087
Definition sp|P16087|GAG_FIVPE Gag polyprotein OS=Feline immunodeficiency virus (isolate Petaluma)
Align length 30
Score (bit) 44.7
E-value 0.0003
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP911826|Adiantum capillus-veneris mRNA, clone:
YMU001_000009_F04.
         (533 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P16087|GAG_FIVPE Gag polyprotein OS=Feline immunodeficiency v...    45   3e-04
sp|P19027|GAG_FIVSD Gag polyprotein OS=Feline immunodeficiency v...    44   4e-04
sp|P31821|GAG_FIVT2 Gag polyprotein OS=Feline immunodeficiency v...    44   5e-04
sp|Q9NUD5|ZCHC3_HUMAN Zinc finger CCHC domain-containing protein...    44   6e-04
sp|Q05313|GAG_FIVWO Gag polyprotein OS=Feline immunodeficiency v...    43   8e-04
sp|P35955|GAG_VILVK Gag polyprotein OS=Maedi visna virus (strain...    42   0.002
sp|P23425|GAG_VILV2 Gag polyprotein OS=Maedi visna virus (strain...    42   0.002
sp|P23424|GAG_VILV1 Gag polyprotein OS=Maedi visna virus (strain...    42   0.002
sp|P03352|GAG_VILV Gag polyprotein OS=Maedi visna virus (strain ...    42   0.002
sp|P35963|POL_HV1Y2 Gag-Pol polyprotein OS=Human immunodeficienc...    41   0.003
sp|P12497|POL_HV1N5 Gag-Pol polyprotein OS=Human immunodeficienc...    41   0.003
sp|Q73368|POL_HV1B9 Gag-Pol polyprotein OS=Human immunodeficienc...    41   0.003
sp|P16900|GAG_OMVVS Gag polyprotein OS=Ovine maedi visna related...    41   0.003
sp|P35962|GAG_HV1Y2 Gag polyprotein OS=Human immunodeficiency vi...    41   0.003
sp|P12493|GAG_HV1N5 Gag polyprotein OS=Human immunodeficiency vi...    41   0.003
sp|Q73367|GAG_HV1B9 Gag polyprotein OS=Human immunodeficiency vi...    41   0.003
sp|P20875|POL_HV1JR Gag-Pol polyprotein OS=Human immunodeficienc...    41   0.004
sp|P04589|POL_HV1EL Gag-Pol polyprotein OS=Human immunodeficienc...    41   0.004
sp|P20873|GAG_HV1JR Gag polyprotein OS=Human immunodeficiency vi...    41   0.004
sp|P04592|GAG_HV1EL Gag polyprotein OS=Human immunodeficiency vi...    41   0.004
sp|P12502|POL_SIVS4 Gag-Pol polyprotein OS=Simian immunodeficien...    40   0.005
sp|Q76634|POL_HV2UC Gag-Pol polyprotein OS=Human immunodeficienc...    40   0.005
sp|P12499|POL_HV1Z2 Gag-Pol polyprotein OS=Human immunodeficienc...    40   0.005
sp|P24740|POL_HV1U4 Gag-Pol polyprotein OS=Human immunodeficienc...    40   0.005
sp|P12496|GAG_SIVS4 Gag polyprotein OS=Simian immunodeficiency v...    40   0.005
sp|Q76633|GAG_HV2UC Gag polyprotein OS=Human immunodeficiency vi...    40   0.005
sp|P12495|GAG_HV1Z2 Gag polyprotein OS=Human immunodeficiency vi...    40   0.005
sp|P24736|GAG_HV1U4 Gag polyprotein OS=Human immunodeficiency vi...    40   0.005
sp|P15833|POL_HV2D2 Gag-Pol polyprotein OS=Human immunodeficienc...    40   0.007
sp|Q9WC63|POL_HV1S9 Gag-Pol polyprotein OS=Human immunodeficienc...    40   0.007

>sp|P16087|GAG_FIVPE Gag polyprotein OS=Feline immunodeficiency
           virus (isolate Petaluma) GN=gag PE=3 SV=1
          Length = 450

 Score = 44.7 bits (104), Expect = 3e-04
 Identities = 17/30 (56%), Positives = 20/30 (66%)
 Frame = -2

Query: 529 CGKEGHIAKDCLASKTCNICGKKGHLPSKC 440
           C K GH+A+ C   K CN CGK GHL +KC
Sbjct: 380 CKKPGHLARQCREVKKCNKCGKPGHLAAKC 409


>sp|P19027|GAG_FIVSD Gag polyprotein OS=Feline immunodeficiency
           virus (strain San Diego) GN=gag PE=3 SV=1
          Length = 450

 Score = 44.3 bits (103), Expect = 4e-04
 Identities = 17/30 (56%), Positives = 20/30 (66%)
 Frame = -2

Query: 529 CGKEGHIAKDCLASKTCNICGKKGHLPSKC 440
           C K GH+A+ C   K CN CGK GHL +KC
Sbjct: 380 CKKPGHLARQCRDVKKCNKCGKPGHLAAKC 409


>sp|P31821|GAG_FIVT2 Gag polyprotein OS=Feline immunodeficiency
           virus (isolate TM2) GN=gag PE=3 SV=1
          Length = 449

 Score = 43.9 bits (102), Expect = 5e-04
 Identities = 16/30 (53%), Positives = 20/30 (66%)
 Frame = -2

Query: 529 CGKEGHIAKDCLASKTCNICGKKGHLPSKC 440
           C K GH+A+ C  +K CN CGK GHL + C
Sbjct: 380 CKKPGHLARQCKEAKRCNNCGKPGHLAANC 409


>sp|Q9NUD5|ZCHC3_HUMAN Zinc finger CCHC domain-containing protein 3
           OS=Homo sapiens GN=ZCCHC3 PE=1 SV=1
          Length = 404

 Score = 43.5 bits (101), Expect = 6e-04
 Identities = 15/35 (42%), Positives = 24/35 (68%)
 Frame = -2

Query: 532 KCGKEGHIAKDCLASKTCNICGKKGHLPSKCLKNI 428
           +CG+EGH++  C     CN+CGK+GH  ++C K +
Sbjct: 356 RCGEEGHLSPYCRKGIVCNLCGKRGHAFAQCPKAV 390



 Score = 32.7 bits (73), Expect = 1.1
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = -2

Query: 532 KCGKEGHIAKDCLASKTCNICGKKGHLPSKCLKNI 428
           KCG   H++  C   + C  CG++GHL   C K I
Sbjct: 338 KCGSRTHMSGSCTQDR-CFRCGEEGHLSPYCRKGI 371


>sp|Q05313|GAG_FIVWO Gag polyprotein OS=Feline immunodeficiency
           virus (isolate Wo) GN=gag PE=3 SV=1
          Length = 450

 Score = 43.1 bits (100), Expect = 8e-04
 Identities = 16/30 (53%), Positives = 20/30 (66%)
 Frame = -2

Query: 529 CGKEGHIAKDCLASKTCNICGKKGHLPSKC 440
           C + GH+A+ C   K CN CGK GHL +KC
Sbjct: 380 CKRPGHLARQCRDVKKCNKCGKPGHLAAKC 409


>sp|P35955|GAG_VILVK Gag polyprotein OS=Maedi visna virus (strain
           KV1772) GN=gag PE=3 SV=1
          Length = 442

 Score = 41.6 bits (96), Expect = 0.002
 Identities = 16/47 (34%), Positives = 26/47 (55%)
 Frame = -2

Query: 529 CGKEGHIAKDCLASKTCNICGKKGHLPSKCLKNIEVAPREIQGPKTI 389
           CGK GH+A+ C     C+ CGK+GH+   C +  +      +GP+ +
Sbjct: 390 CGKPGHLARQCRQGIICHHCGKRGHMQKDCRQKKQQGNNR-RGPRVV 435


>sp|P23425|GAG_VILV2 Gag polyprotein OS=Maedi visna virus (strain
           1514 / clone LV1-1KS2) GN=gag PE=3 SV=1
          Length = 442

 Score = 41.6 bits (96), Expect = 0.002
 Identities = 16/47 (34%), Positives = 26/47 (55%)
 Frame = -2

Query: 529 CGKEGHIAKDCLASKTCNICGKKGHLPSKCLKNIEVAPREIQGPKTI 389
           CGK GH+A+ C     C+ CGK+GH+   C +  +      +GP+ +
Sbjct: 390 CGKPGHLARQCRQGIICHHCGKRGHMQKDCRQKKQQGNNR-RGPRVV 435


>sp|P23424|GAG_VILV1 Gag polyprotein OS=Maedi visna virus (strain
           1514 / clone LV1-1KS1) GN=gag PE=3 SV=1
          Length = 442

 Score = 41.6 bits (96), Expect = 0.002
 Identities = 16/47 (34%), Positives = 26/47 (55%)
 Frame = -2

Query: 529 CGKEGHIAKDCLASKTCNICGKKGHLPSKCLKNIEVAPREIQGPKTI 389
           CGK GH+A+ C     C+ CGK+GH+   C +  +      +GP+ +
Sbjct: 390 CGKPGHLARQCRQGIICHHCGKRGHMQKDCRQKKQQGNNR-RGPRVV 435


>sp|P03352|GAG_VILV Gag polyprotein OS=Maedi visna virus (strain
           1514) GN=gag PE=3 SV=1
          Length = 442

 Score = 41.6 bits (96), Expect = 0.002
 Identities = 16/47 (34%), Positives = 26/47 (55%)
 Frame = -2

Query: 529 CGKEGHIAKDCLASKTCNICGKKGHLPSKCLKNIEVAPREIQGPKTI 389
           CGK GH+A+ C     C+ CGK+GH+   C +  +      +GP+ +
Sbjct: 390 CGKPGHLARQCRQGIICHHCGKRGHMQKDCRQKKQQGNNR-RGPRVV 435


>sp|P35963|POL_HV1Y2 Gag-Pol polyprotein OS=Human immunodeficiency
           virus type 1 (isolate YU-2 group M subtype B) GN=gag-pol
           PE=1 SV=3
          Length = 1435

 Score = 41.2 bits (95), Expect = 0.003
 Identities = 19/32 (59%), Positives = 21/32 (65%), Gaps = 2/32 (6%)
 Frame = -2

Query: 529 CGKEGHIAKDCLA--SKTCNICGKKGHLPSKC 440
           CGKEGHIAK+C A   K C  CGK+GH    C
Sbjct: 395 CGKEGHIAKNCRAPRKKGCWKCGKEGHQMKDC 426
tr_hit_id A3R3I6
Definition tr|A3R3I6|A3R3I6_9RETR Gag polyprotein OS=Feline immunodeficiency virus
Align length 32
Score (bit) 48.5
E-value 0.0002
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP911826|Adiantum capillus-veneris mRNA, clone:
YMU001_000009_F04.
         (533 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A3R3I6|A3R3I6_9RETR Gag polyprotein OS=Feline immunodeficienc...    49   2e-04
tr|A3R3I8|A3R3I8_9RETR Gag polyprotein OS=Feline immunodeficienc...    48   4e-04
tr|A3R3I7|A3R3I7_9RETR Gag polyprotein OS=Feline immunodeficienc...    48   4e-04
tr|A3R3I4|A3R3I4_9RETR Gag polyprotein OS=Feline immunodeficienc...    48   4e-04
tr|A3R3I3|A3R3I3_9RETR Gag polyprotein OS=Feline immunodeficienc...    48   4e-04
tr|A3R3J5|A3R3J5_9RETR Gag polyprotein OS=Feline immunodeficienc...    47   5e-04
tr|A3R3I5|A3R3I5_9RETR Gag polyprotein OS=Feline immunodeficienc...    47   5e-04
tr|A7L494|A7L494_ARTSF Putative zinc finger protein (Fragment) O...    47   5e-04
tr|Q284M8|Q284M8_9RETR Gag polyprotein OS=Feline immunodeficienc...    46   0.001
tr|P89686|P89686_9RETR Gag polyprotein OS=Feline immunodeficienc...    46   0.001
tr|B2XY37|B2XY37_CAEV Gag polyprotein OS=Caprine arthritis encep...    46   0.001
tr|A8T2L6|A8T2L6_9RETR Gag polyprotein (Fragment) OS=Small rumin...    46   0.001
tr|A8T2L0|A8T2L0_9RETR Gag polyprotein (Fragment) OS=Small rumin...    46   0.001
tr|A8T2K5|A8T2K5_9RETR Gag polyprotein (Fragment) OS=Small rumin...    46   0.001
tr|A8T2J3|A8T2J3_9RETR Gag polyprotein (Fragment) OS=Small rumin...    46   0.001
tr|A8T2I2|A8T2I2_9RETR Gag polyprotein (Fragment) OS=Small rumin...    46   0.001
tr|A8T2B6|A8T2B6_9RETR Gag polyprotein (Fragment) OS=Small rumin...    46   0.001
tr|A8T260|A8T260_9RETR Gag polyprotein (Fragment) OS=Small rumin...    46   0.001
tr|A8T253|A8T253_9RETR Gag polyprotein (Fragment) OS=Small rumin...    46   0.001
tr|A8T246|A8T246_9RETR Gag polyprotein (Fragment) OS=Small rumin...    46   0.001
tr|A3R3J2|A3R3J2_9RETR Gag polyprotein OS=Feline immunodeficienc...    46   0.001
tr|A8TCG8|A8TCG8_9RETR Gag polyprotein (Fragment) OS=Small rumin...    46   0.001
tr|A3R3J8|A3R3J8_9RETR Gag polyprotein OS=Feline immunodeficienc...    46   0.001
tr|A3R3J4|A3R3J4_9RETR Gag polyprotein OS=Feline immunodeficienc...    46   0.001
tr|A3R3J3|A3R3J3_9RETR Gag polyprotein OS=Feline immunodeficienc...    46   0.001
tr|Q2ES65|Q2ES65_9RETR Gag polyprotein (Fragment) OS=Feline immu...    45   0.002
tr|Q2ES60|Q2ES60_9RETR Gag polyprotein OS=Feline immunodeficienc...    45   0.002
tr|B2BWH6|B2BWH6_9RETR Gag protein OS=Feline immunodeficiency vi...    45   0.002
tr|A8T266|A8T266_9RETR Gag polyprotein (Fragment) OS=Small rumin...    45   0.002
tr|A7U8Z2|A7U8Z2_9RETR Gag polyprotein OS=Feline immunodeficienc...    45   0.002

>tr|A3R3I6|A3R3I6_9RETR Gag polyprotein OS=Feline immunodeficiency
           virus PE=4 SV=1
          Length = 462

 Score = 48.5 bits (114), Expect = 2e-04
 Identities = 18/32 (56%), Positives = 23/32 (71%)
 Frame = -2

Query: 529 CGKEGHIAKDCLASKTCNICGKKGHLPSKCLK 434
           CGK GH+AK+C A K CN CGK GH+ + C +
Sbjct: 390 CGKVGHMAKNCRAPKRCNKCGKSGHISTDCFQ 421


>tr|A3R3I8|A3R3I8_9RETR Gag polyprotein OS=Feline immunodeficiency
           virus PE=4 SV=1
          Length = 461

 Score = 47.8 bits (112), Expect = 4e-04
 Identities = 18/32 (56%), Positives = 23/32 (71%)
 Frame = -2

Query: 529 CGKEGHIAKDCLASKTCNICGKKGHLPSKCLK 434
           CGK GH+AK+C A K CN CGK GH+ + C +
Sbjct: 389 CGKLGHMAKNCRAPKRCNKCGKTGHISTDCFQ 420


>tr|A3R3I7|A3R3I7_9RETR Gag polyprotein OS=Feline immunodeficiency
           virus PE=4 SV=1
          Length = 461

 Score = 47.8 bits (112), Expect = 4e-04
 Identities = 18/32 (56%), Positives = 23/32 (71%)
 Frame = -2

Query: 529 CGKEGHIAKDCLASKTCNICGKKGHLPSKCLK 434
           CGK GH+AK+C A K CN CGK GH+ + C +
Sbjct: 389 CGKLGHMAKNCRAPKRCNKCGKTGHISTDCFQ 420


>tr|A3R3I4|A3R3I4_9RETR Gag polyprotein OS=Feline immunodeficiency
           virus PE=4 SV=1
          Length = 462

 Score = 47.8 bits (112), Expect = 4e-04
 Identities = 17/32 (53%), Positives = 23/32 (71%)
 Frame = -2

Query: 529 CGKEGHIAKDCLASKTCNICGKKGHLPSKCLK 434
           CGK GH+A++C A K CN CGK GH+ + C +
Sbjct: 390 CGKAGHMARNCRAPKRCNKCGKSGHISTDCFQ 421


>tr|A3R3I3|A3R3I3_9RETR Gag polyprotein OS=Feline immunodeficiency
           virus PE=4 SV=1
          Length = 462

 Score = 47.8 bits (112), Expect = 4e-04
 Identities = 17/32 (53%), Positives = 23/32 (71%)
 Frame = -2

Query: 529 CGKEGHIAKDCLASKTCNICGKKGHLPSKCLK 434
           CGK GH+A++C A K CN CGK GH+ + C +
Sbjct: 390 CGKAGHMARNCRAPKRCNKCGKSGHISTDCFQ 421


>tr|A3R3J5|A3R3J5_9RETR Gag polyprotein OS=Feline immunodeficiency
           virus PE=4 SV=1
          Length = 462

 Score = 47.4 bits (111), Expect = 5e-04
 Identities = 17/32 (53%), Positives = 23/32 (71%)
 Frame = -2

Query: 529 CGKEGHIAKDCLASKTCNICGKKGHLPSKCLK 434
           CGK GH+A++C A K CN CGK GH+ + C +
Sbjct: 390 CGKIGHLARNCRAPKRCNKCGKSGHISTDCFQ 421


>tr|A3R3I5|A3R3I5_9RETR Gag polyprotein OS=Feline immunodeficiency
           virus PE=4 SV=1
          Length = 462

 Score = 47.4 bits (111), Expect = 5e-04
 Identities = 17/32 (53%), Positives = 23/32 (71%)
 Frame = -2

Query: 529 CGKEGHIAKDCLASKTCNICGKKGHLPSKCLK 434
           CGK GH+A++C A K CN CGK GH+ + C +
Sbjct: 390 CGKIGHLARNCRAPKRCNKCGKSGHISTDCFQ 421


>tr|A7L494|A7L494_ARTSF Putative zinc finger protein (Fragment)
           OS=Artemia sanfranciscana PE=2 SV=1
          Length = 256

 Score = 47.4 bits (111), Expect = 5e-04
 Identities = 23/51 (45%), Positives = 31/51 (60%), Gaps = 4/51 (7%)
 Frame = -2

Query: 532 KCGKEGHIAKDCLAS----KTCNICGKKGHLPSKCLKNIEVAPREIQGPKT 392
           KCGKEGH A DC A+     TC +CG +GHL  +C +N +   +  +G KT
Sbjct: 134 KCGKEGHRANDCSAAGYKFATCFVCGNEGHLARECPENTKKGSKN-EGTKT 183


>tr|Q284M8|Q284M8_9RETR Gag polyprotein OS=Feline immunodeficiency
           virus GN=gag PE=4 SV=1
          Length = 461

 Score = 46.2 bits (108), Expect = 0.001
 Identities = 17/30 (56%), Positives = 22/30 (73%)
 Frame = -2

Query: 529 CGKEGHIAKDCLASKTCNICGKKGHLPSKC 440
           CGK GH+A++C A K CN CGK GH+ + C
Sbjct: 390 CGKAGHMARNCRAPKKCNKCGKIGHISTDC 419


>tr|P89686|P89686_9RETR Gag polyprotein OS=Feline immunodeficiency
           virus GN=gag PE=4 SV=1
          Length = 498

 Score = 46.2 bits (108), Expect = 0.001
 Identities = 16/30 (53%), Positives = 22/30 (73%)
 Frame = -2

Query: 529 CGKEGHIAKDCLASKTCNICGKKGHLPSKC 440
           CGK GH+A++C A + CN CGK GH+ + C
Sbjct: 414 CGKPGHLARNCRAPRKCNKCGKAGHIATDC 443