BP911830
Clone id YMU001_000009_F09
Library
Length 543
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000009_F09.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence
TCGGCAATGAACGCCACCTAATATGCATTGAAGATCCATTTGAGGTATCGCATGACCTAG
GGCGTGTGGTTGATAAACACAGCATTCGGGTCCTACGAGATGAATTTCAGAGAGCTGCAA
GAATAATGCGTCAGGATGCAAACCCGTGTATTGCACTGTTTGAACCCTATATCCGACAGA
AGGCTCAGGCTGCATAGCGAATGAATGCAGCAGGATGAACGAGCTGTGATTGTGGAAATA
TTGAAGGTGCATTTGAGCTCTCCAACAAAGCCTTTTGTTAGCTGGAATACAAGAGATGAA
CGATGGGCTCTAGAGTAAGAAGGGAACGGCTTCTGCTTCCTTGTGTTCGCAGTGTCAACT
CAGTGGTTTTAGGCATTTGATTGTGCATGTGTCTAGCACACTACAGTGCAAAGGCTTGCT
AGAATATTGGAGGCGAGACTTATCAGCTTGGCTCCGGGGGTGCAGTATAGTATACATGGT
GCACTTGTACACTATATTTTCCCAACTAGTTAATGTCTGCTCTGCACCATGTTGTGATAT
AAC
■■Homology search results ■■ -
sp_hit_id O13833
Definition sp|O13833|CID1_SCHPO Poly(A) RNA polymerase protein cid1 OS=Schizosaccharomyces pombe
Align length 46
Score (bit) 46.2
E-value 0.0001
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP911830|Adiantum capillus-veneris mRNA, clone:
YMU001_000009_F09.
(543 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|O13833|CID1_SCHPO Poly(A) RNA polymerase protein cid1 OS=Schi... 46 1e-04
sp|O74326|CID11_SCHPO Poly(A) RNA polymerase cid11 OS=Schizosacc... 41 0.004
sp|Q9UT49|CID13_SCHPO Poly(A) RNA polymerase cid13 OS=Schizosacc... 34 0.40
sp|Q8V736|POLG_CACV4 Genome polyprotein OS=Canine calicivirus (s... 30 7.6
sp|Q6DFA8|GLD2B_XENLA Poly(A) RNA polymerase GLD2-B OS=Xenopus l... 30 9.9
sp|Q641A1|GLD2A_XENLA Poly(A) RNA polymerase GLD2-A OS=Xenopus l... 30 9.9

>sp|O13833|CID1_SCHPO Poly(A) RNA polymerase protein cid1
OS=Schizosaccharomyces pombe GN=cid1 PE=2 SV=2
Length = 405

Score = 46.2 bits (108), Expect = 1e-04
Identities = 18/46 (39%), Positives = 31/46 (67%)
Frame = +3

Query: 9 ERHLICIEDPFEVSHDLGRVVDKHSIRVLRDEFQRAARIMRQDANP 146
+R+++ IEDPFE+SH++GR V + +R EF A+R++ + P
Sbjct: 322 DRYILAIEDPFEISHNVGRTVSSSGLYRIRGEFMAASRLLNSRSYP 367


>sp|O74326|CID11_SCHPO Poly(A) RNA polymerase cid11
OS=Schizosaccharomyces pombe GN=cid11 PE=2 SV=1
Length = 478

Score = 40.8 bits (94), Expect = 0.004
Identities = 17/43 (39%), Positives = 28/43 (65%)
Frame = +3

Query: 21 ICIEDPFEVSHDLGRVVDKHSIRVLRDEFQRAARIMRQDANPC 149
+C+E+PF + +L D S++ L+ EFQRA R+M ++ N C
Sbjct: 309 LCVEEPFNTARNLANTADNPSVKGLQSEFQRAFRLMSEN-NAC 350


>sp|Q9UT49|CID13_SCHPO Poly(A) RNA polymerase cid13
OS=Schizosaccharomyces pombe GN=cid13 PE=1 SV=1
Length = 578

Score = 34.3 bits (77), Expect = 0.40
Identities = 12/43 (27%), Positives = 27/43 (62%)
Frame = +3

Query: 15 HLICIEDPFEVSHDLGRVVDKHSIRVLRDEFQRAARIMRQDAN 143
+ +C+E+PF S +L D+ +++ ++ EF+R R++ + N
Sbjct: 319 NFLCVEEPFHTSRNLANTADEITMKGIQLEFRRVFRLLAYNCN 361


>sp|Q8V736|POLG_CACV4 Genome polyprotein OS=Canine calicivirus (strain
48) GN=ORF1 PE=3 SV=1
Length = 1929

Score = 30.0 bits (66), Expect = 7.6
Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 3/60 (5%)
Frame = -1

Query: 225 SSFILLHSFAMQPEPSVGYRVQTVQYTGLHPDAL---FLQLSEIHLVGPECCVYQPHALG 55
S+ +L + F + P++ Y+ TVQ TG++ L +S H+ + C +QP LG
Sbjct: 1394 SNTVLSNRFWKEEAPTISYKGLTVQETGVNKAVLKGTNYHVSPAHVDDYQDCTHQPANLG 1453


>sp|Q6DFA8|GLD2B_XENLA Poly(A) RNA polymerase GLD2-B OS=Xenopus
laevis GN=papd4-B PE=1 SV=1
Length = 509

Score = 29.6 bits (65), Expect = 9.9
Identities = 13/39 (33%), Positives = 23/39 (58%)
Frame = +3

Query: 21 ICIEDPFEVSHDLGRVVDKHSIRVLRDEFQRAARIMRQD 137
IC+E+PF+ S+ V +K ++R EF +A +R +
Sbjct: 452 ICVEEPFDGSNTARAVYEKQKFDLIRAEFLKAWVALRDN 490


>sp|Q641A1|GLD2A_XENLA Poly(A) RNA polymerase GLD2-A OS=Xenopus
laevis GN=papd4-A PE=1 SV=1
Length = 509

Score = 29.6 bits (65), Expect = 9.9
Identities = 12/39 (30%), Positives = 23/39 (58%)
Frame = +3

Query: 21 ICIEDPFEVSHDLGRVVDKHSIRVLRDEFQRAARIMRQD 137
IC+E+PF+ ++ V ++ ++R EF +A +R D
Sbjct: 452 ICVEEPFDGTNTARAVYERQKFDMIRAEFLKAWGALRDD 490


tr_hit_id A9SY04
Definition tr|A9SY04|A9SY04_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
Align length 59
Score (bit) 104.0
E-value 3.0e-21
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP911830|Adiantum capillus-veneris mRNA, clone:
YMU001_000009_F09.
(543 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|A9SY04|A9SY04_PHYPA Predicted protein OS=Physcomitrella paten... 104 3e-21
tr|O64642|O64642_ARATH Expressed protein (Putative uncharacteriz... 102 2e-20
tr|A7PY51|A7PY51_VITVI Chromosome chr15 scaffold_37, whole genom... 99 1e-19
tr|A5BY57|A5BY57_VITVI Putative uncharacterized protein OS=Vitis... 99 1e-19
tr|Q6ZH89|Q6ZH89_ORYSJ Putative caffeine-induced death protein 1... 97 7e-19
tr|A2X0A3|A2X0A3_ORYSI Putative uncharacterized protein OS=Oryza... 97 7e-19
tr|Q8LMP4|Q8LMP4_ORYSJ Putative uncharacterized protein OS=Oryza... 91 5e-17
tr|Q10A03|Q10A03_ORYSJ cDNA clone:J023057P21, full insert sequen... 91 5e-17
tr|Q0IYN4|Q0IYN4_ORYSJ Os10g0188300 protein (Fragment) OS=Oryza ... 91 5e-17
tr|B8BG11|B8BG11_ORYSI Putative uncharacterized protein OS=Oryza... 91 5e-17
tr|A8I0F7|A8I0F7_CHLRE Predicted protein (Fragment) OS=Chlamydom... 75 2e-12
tr|A7PWW5|A7PWW5_VITVI Chromosome chr19 scaffold_35, whole genom... 64 5e-09
tr|A8NJ51|A8NJ51_COPC7 Putative uncharacterized protein OS=Copri... 48 3e-04
tr|Q8J114|Q8J114_CRYNV CID1 OS=Cryptococcus neoformans var. grub... 48 4e-04
tr|Q8J0Z2|Q8J0Z2_CRYNV CID1 OS=Cryptococcus neoformans var. grub... 48 4e-04
tr|Q8J0Y2|Q8J0Y2_CRYNE CID1 OS=Cryptococcus neoformans var. neof... 48 4e-04
tr|Q8J0W6|Q8J0W6_CRYNE CID1 OS=Cryptococcus neoformans var. neof... 48 4e-04
tr|Q6TGI9|Q6TGI9_CRYGA CID1 OS=Cryptococcus gattii PE=4 SV=1 48 4e-04
tr|Q5Y262|Q5Y262_CRYGA CID1p OS=Cryptococcus gattii GN=CID1 PE=4... 48 4e-04
tr|Q5Y230|Q5Y230_CRYGA CID1p OS=Cryptococcus gattii GN=CID1 PE=4... 48 4e-04
tr|Q5KHN6|Q5KHN6_CRYNE Putative uncharacterized protein OS=Crypt... 48 4e-04
tr|B2WPG1|B2WPG1_PYRTR Poly(A) RNA polymerase cid13 OS=Pyrenopho... 48 4e-04
tr|Q7RWR6|Q7RWR6_NEUCR Predicted protein (Related to caffeine-in... 46 0.001
tr|A7EFW8|A7EFW8_SCLS1 Putative uncharacterized protein OS=Scler... 45 0.002
tr|Q0UIK8|Q0UIK8_PHANO Putative uncharacterized protein OS=Phaeo... 45 0.002
tr|B6K2A2|B6K2A2_SCHJP Caffeine-induced death protein OS=Schizos... 45 0.002
tr|B0D7E5|B0D7E5_LACBS Predicted protein OS=Laccaria bicolor (st... 45 0.002
tr|Q2H0B3|Q2H0B3_CHAGB Putative uncharacterized protein OS=Chaet... 44 0.005
tr|A4RJH0|A4RJH0_MAGGR Putative uncharacterized protein OS=Magna... 43 0.012
tr|A8PVQ8|A8PVQ8_MALGO Putative uncharacterized protein OS=Malas... 42 0.016

>tr|A9SY04|A9SY04_PHYPA Predicted protein OS=Physcomitrella patens
subsp. patens GN=PHYPADRAFT_189614 PE=4 SV=1
Length = 135

Score = 104 bits (259), Expect = 3e-21
Identities = 46/59 (77%), Positives = 56/59 (94%)
Frame = +3

Query: 3 GNERHLICIEDPFEVSHDLGRVVDKHSIRVLRDEFQRAARIMRQDANPCIALFEPYIRQ 179
GNERHLICIEDPFE++HDLGRVVD++SIRVLRDEF+RAA+I+ QD+NP ALFEP+IR+
Sbjct: 76 GNERHLICIEDPFEITHDLGRVVDRNSIRVLRDEFKRAAKILHQDSNPATALFEPFIRE 134


>tr|O64642|O64642_ARATH Expressed protein (Putative uncharacterized
protein At2g45620) OS=Arabidopsis thaliana GN=At2g45620
PE=2 SV=2
Length = 764

Score = 102 bits (253), Expect = 2e-20
Identities = 47/57 (82%), Positives = 50/57 (87%)
Frame = +3

Query: 3 GNERHLICIEDPFEVSHDLGRVVDKHSIRVLRDEFQRAARIMRQDANPCIALFEPYI 173
GN+RHLICIEDPFE SHDLGRVVDK SIRVLR+EF+RAARIM QD NPC L EPYI
Sbjct: 698 GNDRHLICIEDPFETSHDLGRVVDKFSIRVLREEFERAARIMHQDPNPCAKLLEPYI 754


>tr|A7PY51|A7PY51_VITVI Chromosome chr15 scaffold_37, whole genome
shotgun sequence OS=Vitis vinifera GN=GSVIVT00026303001
PE=4 SV=1
Length = 720

Score = 99.4 bits (246), Expect = 1e-19
Identities = 43/57 (75%), Positives = 52/57 (91%)
Frame = +3

Query: 3 GNERHLICIEDPFEVSHDLGRVVDKHSIRVLRDEFQRAARIMRQDANPCIALFEPYI 173
GN+RHLICIEDPFE+SHDLGRVVDK SI+VLR+EF+RAA IM+ D +PC+ LFEPY+
Sbjct: 662 GNDRHLICIEDPFEISHDLGRVVDKFSIKVLREEFERAAYIMQYDPDPCVTLFEPYV 718


>tr|A5BY57|A5BY57_VITVI Putative uncharacterized protein OS=Vitis
vinifera GN=VITISV_006352 PE=4 SV=1
Length = 720

Score = 99.4 bits (246), Expect = 1e-19
Identities = 43/57 (75%), Positives = 52/57 (91%)
Frame = +3

Query: 3 GNERHLICIEDPFEVSHDLGRVVDKHSIRVLRDEFQRAARIMRQDANPCIALFEPYI 173
GN+RHLICIEDPFE+SHDLGRVVDK SI+VLR+EF+RAA IM+ D +PC+ LFEPY+
Sbjct: 662 GNDRHLICIEDPFEISHDLGRVVDKFSIKVLREEFERAAYIMQYDPDPCVTLFEPYV 718


>tr|Q6ZH89|Q6ZH89_ORYSJ Putative caffeine-induced death protein 1
(Putative uncharacterized protein) OS=Oryza sativa
subsp. japonica GN=OJ1020_C02.27 PE=4 SV=1
Length = 597

Score = 96.7 bits (239), Expect = 7e-19
Identities = 42/56 (75%), Positives = 51/56 (91%)
Frame = +3

Query: 3 GNERHLICIEDPFEVSHDLGRVVDKHSIRVLRDEFQRAARIMRQDANPCIALFEPY 170
GN+RHLICIEDPFE SHDLGRVVD+ +IRVLR+EF+RAA I++ D +PC+ALFEPY
Sbjct: 538 GNDRHLICIEDPFETSHDLGRVVDRQTIRVLREEFERAATILQYDDDPCVALFEPY 593


>tr|A2X0A3|A2X0A3_ORYSI Putative uncharacterized protein OS=Oryza
sativa subsp. indica GN=OsI_05643 PE=4 SV=1
Length = 597

Score = 96.7 bits (239), Expect = 7e-19
Identities = 42/56 (75%), Positives = 51/56 (91%)
Frame = +3

Query: 3 GNERHLICIEDPFEVSHDLGRVVDKHSIRVLRDEFQRAARIMRQDANPCIALFEPY 170
GN+RHLICIEDPFE SHDLGRVVD+ +IRVLR+EF+RAA I++ D +PC+ALFEPY
Sbjct: 538 GNDRHLICIEDPFETSHDLGRVVDRQTIRVLREEFERAATILQYDDDPCVALFEPY 593


>tr|Q8LMP4|Q8LMP4_ORYSJ Putative uncharacterized protein OS=Oryza
sativa subsp. japonica GN=LOC_Os10g11050 PE=4 SV=1
Length = 138

Score = 90.5 bits (223), Expect = 5e-17
Identities = 41/57 (71%), Positives = 46/57 (80%)
Frame = +3

Query: 3 GNERHLICIEDPFEVSHDLGRVVDKHSIRVLRDEFQRAARIMRQDANPCIALFEPYI 173
GN+RHLICIEDPFE SHDLGRVVD SI LR+EF+RAA I+ D NP I LFEPY+
Sbjct: 76 GNDRHLICIEDPFETSHDLGRVVDNRSIWALREEFERAAEILHLDPNPSITLFEPYV 132


>tr|Q10A03|Q10A03_ORYSJ cDNA clone:J023057P21, full insert sequence
OS=Oryza sativa subsp. japonica GN=LOC_Os10g11034 PE=2
SV=1
Length = 320

Score = 90.5 bits (223), Expect = 5e-17
Identities = 41/57 (71%), Positives = 46/57 (80%)
Frame = +3

Query: 3 GNERHLICIEDPFEVSHDLGRVVDKHSIRVLRDEFQRAARIMRQDANPCIALFEPYI 173
GN+RHLICIEDPFE SHDLGRVVD SI LR+EF+RAA I+ D NP I LFEPY+
Sbjct: 258 GNDRHLICIEDPFETSHDLGRVVDNRSIWALREEFERAAEILHLDPNPSITLFEPYV 314


>tr|Q0IYN4|Q0IYN4_ORYSJ Os10g0188300 protein (Fragment) OS=Oryza
sativa subsp. japonica GN=Os10g0188300 PE=4 SV=1
Length = 372

Score = 90.5 bits (223), Expect = 5e-17
Identities = 41/57 (71%), Positives = 46/57 (80%)
Frame = +3

Query: 3 GNERHLICIEDPFEVSHDLGRVVDKHSIRVLRDEFQRAARIMRQDANPCIALFEPYI 173
GN+RHLICIEDPFE SHDLGRVVD SI LR+EF+RAA I+ D NP I LFEPY+
Sbjct: 310 GNDRHLICIEDPFETSHDLGRVVDNRSIWALREEFERAAEILHLDPNPSITLFEPYV 366


>tr|B8BG11|B8BG11_ORYSI Putative uncharacterized protein OS=Oryza
sativa subsp. indica GN=OsI_32948 PE=4 SV=1
Length = 586

Score = 90.5 bits (223), Expect = 5e-17
Identities = 41/57 (71%), Positives = 46/57 (80%)
Frame = +3

Query: 3 GNERHLICIEDPFEVSHDLGRVVDKHSIRVLRDEFQRAARIMRQDANPCIALFEPYI 173
GN+RHLICIEDPFE SHDLGRVVD SI LR+EF+RAA I+ D NP I LFEPY+
Sbjct: 524 GNDRHLICIEDPFETSHDLGRVVDNRSIWALREEFERAAEILHLDPNPSITLFEPYV 580