BP911832
Clone id YMU001_000009_F11
Library
Length 553
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000009_F11.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence
CTCAGGGACAGGCAAGGTCACCTCTGTCAGATTTGGGCCACTTGCGAAGTACGTGGCAAC
TGGAACTGGGGACCGAAATCTAAGAATATTTGGTGTCCCTGTTGCATCATTGGAGGCTTG
ATCTATAGGGGAGCAATGGCACTTTGATTTGTGGACGTAACCGAAGAGATGTGTGCGTAC
GGGACATTGACCTTGGGGTGCACGCGATAACTTGATTTCTCTATGGTCTTTTTCTCAATC
TGGTGGGCTAGTTGTGCCTGGTTTCCCCTTTCTATTTGTTGTGAGATGAGAGCGAATTCA
GCTGTGTAAAAGGTACTCTGGGCAAGTTGCATAGGAGACAGGTAGGAATTTTGAGATCCA
ACAAACATGGCACTAGCGTGATTTGAAGCGCATGCCGTCAGATCACCTCCCAACAGTGAA
TGCCTGTATTATCATGAGTGAATGAGCCTACTAGGAGAGTCATAGAAGTGGATGTATTTT
AGAGAGGAATTCCAATTCTTGATTGAATGTTTACAACCACTTTATTGTAATGGGTCCGAT
GATGCACTTATGG
■■Homology search results ■■ -
sp_hit_id Q94BR4
Definition sp|Q94BR4|PR19A_ARATH Pre-mRNA-processing factor 19 homolog 1 OS=Arabidopsis thaliana
Align length 33
Score (bit) 50.8
E-value 4.0e-06
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP911832|Adiantum capillus-veneris mRNA, clone:
YMU001_000009_F11.
(553 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q94BR4|PR19A_ARATH Pre-mRNA-processing factor 19 homolog 1 OS... 51 4e-06
sp|P32479|HIR1_YEAST Protein HIR1 OS=Saccharomyces cerevisiae GN... 39 0.022
sp|O22785|PR19B_ARATH Pre-mRNA-processing factor 19 homolog 2 OS... 37 0.065
sp|Q6FVD3|HIR1_CANGA Protein HIR1 OS=Candida glabrata GN=HIR1 PE... 35 0.25
sp|Q9UUG8|TUP12_SCHPO Transcriptional repressor tup12 OS=Schizos... 30 0.42
sp|P87314|HIR1_SCHPO Protein hir1 OS=Schizosaccharomyces pombe G... 33 1.2
sp|Q6CXX3|HIR1_KLULA Protein HIR1 OS=Kluyveromyces lactis GN=HIR... 32 1.6
sp|P0AE29|AROM_SHIFL Protein aroM OS=Shigella flexneri GN=aroM P... 32 2.7
sp|P0AE28|AROM_ECOLI Protein aroM OS=Escherichia coli (strain K1... 32 2.7
sp|Q8NAA4|A16L2_HUMAN Autophagy-related protein 16-2 OS=Homo sap... 32 2.7
sp|A2VEC9|SSPO_HUMAN SCO-spondin OS=Homo sapiens GN=SSPO PE=2 SV=1 31 4.6
sp|Q15542|TAF5_HUMAN Transcription initiation factor TFIID subun... 30 6.0
sp|Q74ZN0|HIR1_ASHGO Protein HIR1 OS=Ashbya gossypii GN=HIR1 PE=... 30 6.0
sp|O08550|MLL4_MOUSE Histone-lysine N-methyltransferase MLL4 OS=... 30 7.9
sp|Q6C553|HIR1_YARLI Protein HIR1 OS=Yarrowia lipolytica GN=HIR1... 30 7.9
sp|Q64118|A1AT_MERUN Alpha-1-antitrypsin OS=Meriones unguiculatu... 30 7.9

>sp|Q94BR4|PR19A_ARATH Pre-mRNA-processing factor 19 homolog 1
OS=Arabidopsis thaliana GN=PUB59 PE=2 SV=1
Length = 523

Score = 50.8 bits (120), Expect = 4e-06
Identities = 23/33 (69%), Positives = 28/33 (84%)
Frame = +2

Query: 2 SGTGKVTSVRFGPLAKYVATGTGDRNLRIFGVP 100
SGTGK TSV+FG +KY+A G+ DRNLRIFG+P
Sbjct: 479 SGTGKATSVKFGLDSKYIAVGSMDRNLRIFGLP 511


>sp|P32479|HIR1_YEAST Protein HIR1 OS=Saccharomyces cerevisiae
GN=HIR1 PE=1 SV=2
Length = 840

Score = 38.5 bits (88), Expect = 0.022
Identities = 20/56 (35%), Positives = 30/56 (53%)
Frame = +2

Query: 8 TGKVTSVRFGPLAKYVATGTGDRNLRIFGVPVASLEA*SIGEQWHFDLWT*PKRCV 175
TG +T V+F P KY+A+G+ DR L I+ + + G + + WT KR V
Sbjct: 79 TGSITCVKFSPDGKYLASGSDDRILLIWALDEEQSSQPAFGSEHEREHWTVRKRLV 134


>sp|O22785|PR19B_ARATH Pre-mRNA-processing factor 19 homolog 2
OS=Arabidopsis thaliana GN=PUB60 PE=2 SV=2
Length = 565

Score = 37.0 bits (84), Expect = 0.065
Identities = 17/26 (65%), Positives = 20/26 (76%)
Frame = +2

Query: 2 SGTGKVTSVRFGPLAKYVATGTGDRN 79
SGTGK T V+FG A+YVA G+ DRN
Sbjct: 478 SGTGKATCVKFGSDAQYVAVGSMDRN 503


>sp|Q6FVD3|HIR1_CANGA Protein HIR1 OS=Candida glabrata GN=HIR1 PE=3
SV=1
Length = 840

Score = 35.0 bits (79), Expect = 0.25
Identities = 21/56 (37%), Positives = 30/56 (53%)
Frame = +2

Query: 8 TGKVTSVRFGPLAKYVATGTGDRNLRIFGVPVASLEA*SIGEQWHFDLWT*PKRCV 175
TG VT V+F P Y+A+G+ DR L I+ + + S G + + WT KR V
Sbjct: 74 TGSVTCVKFSPDGNYLASGSDDRILLIWAMDEEN-HGGSFGSEGEKEHWTVRKRLV 128


>sp|Q9UUG8|TUP12_SCHPO Transcriptional repressor tup12
OS=Schizosaccharomyces pombe GN=tup12 PE=1 SV=1
Length = 586

Score = 30.0 bits (66), Expect(2) = 0.42
Identities = 13/27 (48%), Positives = 18/27 (66%)
Frame = +2

Query: 17 VTSVRFGPLAKYVATGTGDRNLRIFGV 97
V SV F P KY+ATG D+ +RI+ +
Sbjct: 337 VRSVAFSPDGKYLATGVEDQQIRIWDI 363



Score = 23.1 bits (48), Expect(2) = 0.42
Identities = 10/29 (34%), Positives = 15/29 (51%)
Frame = +3

Query: 111 WRLDL*GSNGTLICGRNRRDVCVRDIDLG 197
+ LD TL+ G R VC+ D++ G
Sbjct: 380 YSLDFSKDGKTLVSGSGDRTVCLWDVEAG 408


>sp|P87314|HIR1_SCHPO Protein hir1 OS=Schizosaccharomyces pombe
GN=hip1 PE=1 SV=1
Length = 932

Score = 32.7 bits (73), Expect = 1.2
Identities = 14/23 (60%), Positives = 18/23 (78%)
Frame = +2

Query: 8 TGKVTSVRFGPLAKYVATGTGDR 76
TG VTSVRF P +Y+A+G+ DR
Sbjct: 74 TGTVTSVRFSPNGQYLASGSDDR 96


>sp|Q6CXX3|HIR1_KLULA Protein HIR1 OS=Kluyveromyces lactis GN=HIR1
PE=3 SV=1
Length = 861

Score = 32.3 bits (72), Expect = 1.6
Identities = 18/55 (32%), Positives = 29/55 (52%)
Frame = +2

Query: 11 GKVTSVRFGPLAKYVATGTGDRNLRIFGVPVASLEA*SIGEQWHFDLWT*PKRCV 175
G VT+V+F P KY+A+G+ DR L I+ + + + E + W +R V
Sbjct: 77 GSVTTVKFSPDGKYLASGSDDRILLIWELEGGTTQPMFGAESTDIEHWNVRRRLV 131


>sp|P0AE29|AROM_SHIFL Protein aroM OS=Shigella flexneri GN=aroM PE=3
SV=1
Length = 225

Score = 31.6 bits (70), Expect = 2.7
Identities = 30/98 (30%), Positives = 43/98 (43%), Gaps = 11/98 (11%)
Frame = -3

Query: 263 NQAQLAHQIEKKTIEKSSYRVHPKVNVPY--------AHISSVTSTNQSAIAPL*IKPPM 108
N QLAH +K V N Y A+ISS+T+ N + P I PP+
Sbjct: 63 NDNQLAHVSRRKVERDLQGVVEVLDNQGYDVILLMSTANISSMTARNTIFLEPSRILPPL 122

Query: 107 MQ---QGHQIFLDFGPQFQLPRTSQVAQI*QR*PCLSL 3
+ + HQ+ + + LP +Q QI Q+ P SL
Sbjct: 123 VSSIVEDHQVGVIVPVEEMLPVQAQKWQILQKSPVFSL 160


>sp|P0AE28|AROM_ECOLI Protein aroM OS=Escherichia coli (strain K12)
GN=aroM PE=4 SV=1
Length = 225

Score = 31.6 bits (70), Expect = 2.7
Identities = 30/98 (30%), Positives = 43/98 (43%), Gaps = 11/98 (11%)
Frame = -3

Query: 263 NQAQLAHQIEKKTIEKSSYRVHPKVNVPY--------AHISSVTSTNQSAIAPL*IKPPM 108
N QLAH +K V N Y A+ISS+T+ N + P I PP+
Sbjct: 63 NDNQLAHVSRRKVERDLQGVVEVLDNQGYDVILLMSTANISSMTARNTIFLEPSRILPPL 122

Query: 107 MQ---QGHQIFLDFGPQFQLPRTSQVAQI*QR*PCLSL 3
+ + HQ+ + + LP +Q QI Q+ P SL
Sbjct: 123 VSSIVEDHQVGVIVPVEEMLPVQAQKWQILQKSPVFSL 160


>sp|Q8NAA4|A16L2_HUMAN Autophagy-related protein 16-2 OS=Homo
sapiens GN=ATG16L2 PE=2 SV=2
Length = 619

Score = 31.6 bits (70), Expect = 2.7
Identities = 15/35 (42%), Positives = 23/35 (65%)
Frame = +2

Query: 14 KVTSVRFGPLAKYVATGTGDRNLRIFGVPVASLEA 118
+V +VRFGP + +ATG DR + ++ V + LEA
Sbjct: 338 EVNAVRFGPNSSLLATGGADRLIHLWNVVGSRLEA 372


tr_hit_id A9RKG4
Definition tr|A9RKG4|A9RKG4_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
Align length 39
Score (bit) 60.1
E-value 8.0e-08
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP911832|Adiantum capillus-veneris mRNA, clone:
YMU001_000009_F11.
(553 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|A9RKG4|A9RKG4_PHYPA Predicted protein OS=Physcomitrella paten... 60 8e-08
tr|A9SC45|A9SC45_PHYPA Predicted protein OS=Physcomitrella paten... 59 2e-07
tr|B6TRQ7|B6TRQ7_MAIZE Pre-mRNA-splicing factor 19 OS=Zea mays P... 54 4e-06
tr|B4FAF0|B4FAF0_MAIZE Putative uncharacterized protein OS=Zea m... 54 7e-06
tr|B8BHD2|B8BHD2_ORYSI Putative uncharacterized protein OS=Oryza... 53 1e-05
tr|A7NXH9|A7NXH9_VITVI Chromosome chr5 scaffold_2, whole genome ... 53 1e-05
tr|A6N0H6|A6N0H6_ORYSI Pre-mRNA-splicing factor 19 (Fragment) OS... 53 1e-05
tr|A5BPJ9|A5BPJ9_VITVI Putative uncharacterized protein OS=Vitis... 53 1e-05
tr|Q9AV81|Q9AV81_ORYSJ Os10g0466300 protein OS=Oryza sativa subs... 52 3e-05
tr|A3C5K4|A3C5K4_ORYSJ Putative uncharacterized protein OS=Oryza... 52 3e-05
tr|Q56Z39|Q56Z39_ARATH Putative pre-mRNA splicing factor PRP19 (... 51 5e-05
tr|Q2V4Q9|Q2V4Q9_ARATH Uncharacterized protein At1g04510.2 OS=Ar... 50 8e-05
tr|B5VDX1|B5VDX1_YEAS6 YBL008Wp-like protein OS=Saccharomyces ce... 39 0.24
tr|B3LNE6|B3LNE6_YEAS1 HIR1 OS=Saccharomyces cerevisiae (strain ... 39 0.24
tr|A6ZKU0|A6ZKU0_YEAS7 Histone regulation protein OS=Saccharomyc... 39 0.24
tr|Q3EBP5|Q3EBP5_ARATH Uncharacterized protein At2g33340.2 OS=Ar... 37 0.70
tr|A7TH15|A7TH15_VANPO Putative uncharacterized protein OS=Vande... 35 2.0
tr|Q22D03|Q22D03_TETTH Putative uncharacterized protein OS=Tetra... 34 4.6
tr|B6QNF6|B6QNF6_PENMA Cellular morphogenesis protein (Rax2), pu... 34 5.9
tr|A5E541|A5E541_LODEL Putative uncharacterized protein OS=Lodde... 34 5.9
tr|B6QP58|B6QP58_PENMA F-box domain protein OS=Penicillium marne... 34 6.0
tr|Q3MBB0|Q3MBB0_ANAVT WD-40 repeat OS=Anabaena variabilis (stra... 33 7.8
tr|B0XG82|B0XG82_CULQU Cleavage stimulation factor 50 kDa subuni... 33 7.8

>tr|A9RKG4|A9RKG4_PHYPA Predicted protein OS=Physcomitrella patens
subsp. patens GN=PHYPADRAFT_203375 PE=4 SV=1
Length = 522

Score = 60.1 bits (144), Expect = 8e-08
Identities = 28/39 (71%), Positives = 32/39 (82%)
Frame = +2

Query: 2 SGTGKVTSVRFGPLAKYVATGTGDRNLRIFGVPVASLEA 118
SGTGKVTSVRFGP A Y+A G+ DRNLRIFG P A+ E+
Sbjct: 484 SGTGKVTSVRFGPDASYLAVGSSDRNLRIFGAPTATSES 522


>tr|A9SC45|A9SC45_PHYPA Predicted protein OS=Physcomitrella patens
subsp. patens GN=PHYPADRAFT_183278 PE=4 SV=1
Length = 522

Score = 58.5 bits (140), Expect = 2e-07
Identities = 27/38 (71%), Positives = 31/38 (81%)
Frame = +2

Query: 2 SGTGKVTSVRFGPLAKYVATGTGDRNLRIFGVPVASLE 115
SGTGKVTS+RFGP A Y+A G+ DRNLRIFG P A+ E
Sbjct: 484 SGTGKVTSIRFGPDASYLAVGSSDRNLRIFGAPEAASE 521


>tr|B6TRQ7|B6TRQ7_MAIZE Pre-mRNA-splicing factor 19 OS=Zea mays PE=2
SV=1
Length = 526

Score = 54.3 bits (129), Expect = 4e-06
Identities = 25/33 (75%), Positives = 29/33 (87%)
Frame = +2

Query: 2 SGTGKVTSVRFGPLAKYVATGTGDRNLRIFGVP 100
SGTGKVTSV+FG AKY+A G+ DRNLRIFG+P
Sbjct: 481 SGTGKVTSVKFGADAKYIAVGSMDRNLRIFGLP 513


>tr|B4FAF0|B4FAF0_MAIZE Putative uncharacterized protein OS=Zea mays
PE=2 SV=1
Length = 526

Score = 53.5 bits (127), Expect = 7e-06
Identities = 25/33 (75%), Positives = 29/33 (87%)
Frame = +2

Query: 2 SGTGKVTSVRFGPLAKYVATGTGDRNLRIFGVP 100
SGTGKVTSV+FG AKY+A G+ DRNLRIFG+P
Sbjct: 481 SGTGKVTSVKFGVDAKYIAIGSMDRNLRIFGLP 513


>tr|B8BHD2|B8BHD2_ORYSI Putative uncharacterized protein OS=Oryza
sativa subsp. indica GN=OsI_33953 PE=4 SV=1
Length = 502

Score = 53.1 bits (126), Expect = 1e-05
Identities = 24/33 (72%), Positives = 29/33 (87%)
Frame = +2

Query: 2 SGTGKVTSVRFGPLAKYVATGTGDRNLRIFGVP 100
SGTGKVT+V+FG AKY+A G+ DRNLRIFG+P
Sbjct: 456 SGTGKVTNVKFGTDAKYIAVGSMDRNLRIFGLP 488


>tr|A7NXH9|A7NXH9_VITVI Chromosome chr5 scaffold_2, whole genome
shotgun sequence OS=Vitis vinifera GN=GSVIVT00020342001
PE=4 SV=1
Length = 453

Score = 53.1 bits (126), Expect = 1e-05
Identities = 24/33 (72%), Positives = 28/33 (84%)
Frame = +2

Query: 2 SGTGKVTSVRFGPLAKYVATGTGDRNLRIFGVP 100
SGTGK T V+FGP AKY+A G+ DRNLRIFG+P
Sbjct: 413 SGTGKATCVKFGPDAKYLAVGSMDRNLRIFGLP 445


>tr|A6N0H6|A6N0H6_ORYSI Pre-mRNA-splicing factor 19 (Fragment)
OS=Oryza sativa subsp. indica PE=2 SV=1
Length = 85

Score = 53.1 bits (126), Expect = 1e-05
Identities = 24/33 (72%), Positives = 29/33 (87%)
Frame = +2

Query: 2 SGTGKVTSVRFGPLAKYVATGTGDRNLRIFGVP 100
SGTGKVT+V+FG AKY+A G+ DRNLRIFG+P
Sbjct: 39 SGTGKVTNVKFGTDAKYIAVGSMDRNLRIFGLP 71


>tr|A5BPJ9|A5BPJ9_VITVI Putative uncharacterized protein OS=Vitis
vinifera GN=VITISV_037044 PE=4 SV=1
Length = 247

Score = 53.1 bits (126), Expect = 1e-05
Identities = 24/33 (72%), Positives = 28/33 (84%)
Frame = +2

Query: 2 SGTGKVTSVRFGPLAKYVATGTGDRNLRIFGVP 100
SGTGK T V+FGP AKY+A G+ DRNLRIFG+P
Sbjct: 207 SGTGKATCVKFGPDAKYLAVGSMDRNLRIFGLP 239


>tr|Q9AV81|Q9AV81_ORYSJ Os10g0466300 protein OS=Oryza sativa subsp.
japonica GN=OSJNBa0006L06.5 PE=2 SV=1
Length = 527

Score = 51.6 bits (122), Expect = 3e-05
Identities = 24/33 (72%), Positives = 28/33 (84%)
Frame = +2

Query: 2 SGTGKVTSVRFGPLAKYVATGTGDRNLRIFGVP 100
SGTGKVT+V+FG AKY+A G+ DRNLRIFG P
Sbjct: 481 SGTGKVTNVKFGTDAKYIAVGSMDRNLRIFGHP 513


>tr|A3C5K4|A3C5K4_ORYSJ Putative uncharacterized protein OS=Oryza
sativa subsp. japonica GN=OsJ_030576 PE=4 SV=1
Length = 497

Score = 51.6 bits (122), Expect = 3e-05
Identities = 24/33 (72%), Positives = 28/33 (84%)
Frame = +2

Query: 2 SGTGKVTSVRFGPLAKYVATGTGDRNLRIFGVP 100
SGTGKVT+V+FG AKY+A G+ DRNLRIFG P
Sbjct: 451 SGTGKVTNVKFGTDAKYIAVGSMDRNLRIFGHP 483