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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP911833
Clone id YMU001_000009_F12
Library
Length 514
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000009_F12.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
CGGCCGCAGGAATCAGTGTCTCTCCTGCACTAAGCATTGTAAGACTGCCACTGAGGTATG
CATATCTCCAATCTGACTGACCAGTAGAACCTTTCCTTAGCTCACCAAAAAAACTCTCCC
TTGCACTTCAGCAGCTCTCAATGAAAGGGCGGCAGGTAGTCCCACTGATTGTCCGCAATC
GGAAGCTCCTCCTTGAAAAGCAGTGTGCATCAGGCACACCAATGCATGACCCATATCTTT
GCAAAAGTCTGGATTCACATTTGCAACAAAGCCGCAGAAGCATGACACAAACATTTTTTA
ACCCACCCCATATGTTAAAGCATTATCCCCACAGTCAGTCCAATATAAAAGTCATCTTCC
AGGACCTGGAAATCTGAAAGAAGGCCCATCAAGTTACATAACTATTCTTTGGGTCAGTCT
CTAAAGTTTACCGGTCCCTTGAGGCCCCAGCAATCACTTACTACAGTGAAGGCATGTATC
ACAACTTGATTATTATTGTTCTAAGTTACAAAAT
■■Homology search results ■■ -
sp_hit_id Q5UXH1
Definition sp|Q5UXH1|TRUB_HALMA Probable tRNA pseudouridine synthase B OS=Haloarcula marismortui
Align length 87
Score (bit) 33.9
E-value 0.43
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP911833|Adiantum capillus-veneris mRNA, clone:
YMU001_000009_F12.
         (501 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q5UXH1|TRUB_HALMA Probable tRNA pseudouridine synthase B OS=H...    34   0.43 
sp|Q8YU96|ALR_ANASP Alanine racemase OS=Anabaena sp. (strain PCC...    31   2.8  
sp|P15328|FOLR1_HUMAN Folate receptor alpha OS=Homo sapiens GN=F...    30   4.8  
sp|P02702|FOLR1_BOVIN Folate receptor alpha OS=Bos taurus GN=FOL...    30   6.3  
sp|Q15772|SPEG_HUMAN Striated muscle preferentially expressed pr...    30   6.4  
sp|Q9GLK4|ANFB_FELCA Natriuretic peptides B OS=Felis silvestris ...    30   6.4  
sp|Q8KGC5|MRAZ_CHLTE Protein mraZ OS=Chlorobium tepidum GN=mraZ ...    30   8.2  
sp|P0C278|FRDA_SHEFR Fumarate reductase flavoprotein subunit OS=...    30   8.2  
sp|Q07WU7|FRDA_SHEFN Fumarate reductase flavoprotein subunit OS=...    30   8.2  
sp|Q71YR0|DNLJ_LISMF DNA ligase OS=Listeria monocytogenes seroty...    30   8.2  

>sp|Q5UXH1|TRUB_HALMA Probable tRNA pseudouridine synthase B
           OS=Haloarcula marismortui GN=truB PE=3 SV=1
          Length = 314

 Score = 33.9 bits (76), Expect = 0.43
 Identities = 25/87 (28%), Positives = 42/87 (48%), Gaps = 4/87 (4%)
 Frame = +2

Query: 35  PLRYAYLQSD*PVEPFLSSPKKLSLALQQLSMKGRQVVPLIVRNRKLLLEKQCASGTPM- 211
           P   A + ++   + +   P+K ++  Q  S +   +  L   +R+LLL  +CASGT + 
Sbjct: 111 PADIADIVAEFETDIYQKPPRKSAVKRQLRSRRIHSLDILEQGDRRLLLRVRCASGTYIR 170

Query: 212 ---HDPYLCKSLDSHLQQSRRSMTQTF 283
              HD  L     +H+   RR+ T TF
Sbjct: 171 KLCHDIGLAAGTGAHMGDLRRTATGTF 197


>sp|Q8YU96|ALR_ANASP Alanine racemase OS=Anabaena sp. (strain PCC
           7120) GN=alr PE=3 SV=1
          Length = 386

 Score = 31.2 bits (69), Expect = 2.8
 Identities = 25/81 (30%), Positives = 38/81 (46%), Gaps = 1/81 (1%)
 Frame = -2

Query: 329 WTDCGDNALTYGVG*-KMFVSCFCGFVANVNPDFCKDMGHALVCLMHTAFQGGASDCGQS 153
           W +    AL++ V   K F+S     +A V  D     GH  V +  TA Q GAS  G +
Sbjct: 18  WVEIDLEALSHNVQQLKQFLSPRTQLMAVVKADA---YGHGAVTVAQTALQAGASCLGVA 74

Query: 152 VGLPAALSLRAAEVQGRVFLV 90
             +P  + LR A +Q  + ++
Sbjct: 75  T-VPEGIQLREAGIQAPILIL 94


>sp|P15328|FOLR1_HUMAN Folate receptor alpha OS=Homo sapiens
           GN=FOLR1 PE=1 SV=3
          Length = 257

 Score = 30.4 bits (67), Expect = 4.8
 Identities = 14/57 (24%), Positives = 29/57 (50%)
 Frame = +3

Query: 198 QAHQCMTHIFAKVWIHICNKAAEA*HKHFLTHPIC*SIIPTVSPI*KSSSRTWKSER 368
           +AH+ +++++   W H C + A A  +HF+         P + P  +   ++W+ ER
Sbjct: 73  EAHKDVSYLYRFNWNH-CGEMAPACKRHFIQDTCLYECSPNLGPWIQQVDQSWRKER 128


>sp|P02702|FOLR1_BOVIN Folate receptor alpha OS=Bos taurus GN=FOLR1
           PE=1 SV=2
          Length = 241

 Score = 30.0 bits (66), Expect = 6.3
 Identities = 14/57 (24%), Positives = 28/57 (49%)
 Frame = +3

Query: 198 QAHQCMTHIFAKVWIHICNKAAEA*HKHFLTHPIC*SIIPTVSPI*KSSSRTWKSER 368
           +AH+ +++++   W H C K   A  +HF+         P + P  +  ++ W+ ER
Sbjct: 72  EAHKDISYLYRFNWDH-CGKMEPACKRHFIQDTCLYECSPNLGPWIREVNQRWRKER 127


>sp|Q15772|SPEG_HUMAN Striated muscle preferentially expressed protein
            kinase OS=Homo sapiens GN=SPEG PE=1 SV=4
          Length = 3267

 Score = 30.0 bits (66), Expect = 6.4
 Identities = 25/84 (29%), Positives = 32/84 (38%)
 Frame = +1

Query: 130  ERAAGSPTDCPQSEAPP*KAVCIRHTNA*PISLQKSGFTFATKPQKHDTNIF*PTPYVKA 309
            E +A +P+D PQ  AP             P+   K     A  PQ   T     TPY + 
Sbjct: 2193 EPSATTPSDAPQPPAPQPAQDKAPEPRPEPVRASKP----APPPQALQTLALPLTPYAQI 2248

Query: 310  LSPQSVQYKSHLPGPGNLKEGPSS 381
            +  QS+Q   H  GP      P S
Sbjct: 2249 I--QSLQLSGHAQGPSQGPAAPPS 2270


>sp|Q9GLK4|ANFB_FELCA Natriuretic peptides B OS=Felis silvestris
           catus GN=NPPB PE=2 SV=1
          Length = 132

 Score = 30.0 bits (66), Expect = 6.4
 Identities = 14/33 (42%), Positives = 20/33 (60%)
 Frame = -1

Query: 237 RLLQRYGSCIGVPDAHCFSRRSFRLRTISGTTC 139
           R L+R GS   + D+ CF RR  R+ ++SG  C
Sbjct: 94  RALRRLGSSKMMRDSRCFGRRLDRIGSLSGLGC 126


>sp|Q8KGC5|MRAZ_CHLTE Protein mraZ OS=Chlorobium tepidum GN=mraZ
           PE=3 SV=1
          Length = 155

 Score = 29.6 bits (65), Expect = 8.2
 Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
 Frame = +2

Query: 131 KGRQVVPLIVRNRKLLLEKQCASGTPMHDP--YLCKSLDSHLQ 253
           KGR ++P   R R LL E   A+G P   P  Y+ K+ D  L+
Sbjct: 15  KGRLLIPARFRRRFLLQENDPATGAPSRSPVLYVFKADDGSLE 57


>sp|P0C278|FRDA_SHEFR Fumarate reductase flavoprotein subunit
           OS=Shewanella frigidimarina GN=fccA PE=1 SV=1
          Length = 571

 Score = 29.6 bits (65), Expect = 8.2
 Identities = 19/67 (28%), Positives = 29/67 (43%)
 Frame = +2

Query: 74  EPFLSSPKKLSLALQQLSMKGRQVVPLIVRNRKLLLEKQCASGTPMHDPYLCKSLDSHLQ 253
           EP +    KL+      +   +Q    I  + +L+ E     G  ++DP L K L SH +
Sbjct: 158 EPVIGGNAKLAAGGMNAAWTDQQKAKKITDSPELMFEDTMKGGQNINDPALVKVLSSHSK 217

Query: 254 QSRRSMT 274
            S   MT
Sbjct: 218 DSVDWMT 224


>sp|Q07WU7|FRDA_SHEFN Fumarate reductase flavoprotein subunit
           OS=Shewanella frigidimarina (strain NCIMB 400) GN=fccA
           PE=1 SV=2
          Length = 596

 Score = 29.6 bits (65), Expect = 8.2
 Identities = 19/67 (28%), Positives = 29/67 (43%)
 Frame = +2

Query: 74  EPFLSSPKKLSLALQQLSMKGRQVVPLIVRNRKLLLEKQCASGTPMHDPYLCKSLDSHLQ 253
           EP +    KL+      +   +Q    I  + +L+ E     G  ++DP L K L SH +
Sbjct: 183 EPVIGGNAKLAAGGMNAAWTDQQKAKKITDSPELMFEDTMKGGQNINDPALVKVLSSHSK 242

Query: 254 QSRRSMT 274
            S   MT
Sbjct: 243 DSVDWMT 249


>sp|Q71YR0|DNLJ_LISMF DNA ligase OS=Listeria monocytogenes serotype
           4b (strain F2365) GN=ligA PE=3 SV=1
          Length = 671

 Score = 29.6 bits (65), Expect = 8.2
 Identities = 17/70 (24%), Positives = 31/70 (44%)
 Frame = +2

Query: 83  LSSPKKLSLALQQLSMKGRQVVPLIVRNRKLLLEKQCASGTPMHDPYLCKSLDSHLQQSR 262
           L + K + +    L  K   ++P ++++   + EK+  S  P H P  C + DS L +  
Sbjct: 356 LITEKDIRIGDTVLIKKAGDIIPEVIKS---ITEKRSGSEEPFHMPKNCPACDSELVRLE 412

Query: 263 RSMTQTFFNP 292
             +     NP
Sbjct: 413 EEVALRCINP 422
tr_hit_id Q17MG3
Definition tr|Q17MG3|Q17MG3_AEDAE Putative uncharacterized protein OS=Aedes aegypti
Align length 91
Score (bit) 35.4
E-value 1.5
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP911833|Adiantum capillus-veneris mRNA, clone:
YMU001_000009_F12.
         (501 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q17MG3|Q17MG3_AEDAE Putative uncharacterized protein OS=Aedes...    35   1.5  
tr|B3P9K2|B3P9K2_DROER GG12869 OS=Drosophila erecta GN=GG12869 P...    33   7.4  
tr|A5K6M2|A5K6M2_PLAVI 6-phosphofructokinase, putative OS=Plasmo...    33   7.4  

>tr|Q17MG3|Q17MG3_AEDAE Putative uncharacterized protein OS=Aedes
           aegypti GN=AAEL001032 PE=4 SV=1
          Length = 1263

 Score = 35.4 bits (80), Expect = 1.5
 Identities = 25/91 (27%), Positives = 37/91 (40%)
 Frame = +1

Query: 124 LNERAAGSPTDCPQSEAPP*KAVCIRHTNA*PISLQKSGFTFATKPQKHDTNIF*PTPYV 303
           L   AA S +  P+S+APP  +    +TN+ P     SGF F   P          T   
Sbjct: 573 LGTTAAVSTSSAPKSDAPPAYSFATANTNSAPAMATPSGFGFGKSPPSSAAT----TTNT 628

Query: 304 KALSPQSVQYKSHLPGPGNLKEGPSSYITIL 396
              +P  + +    P P +  E P S  ++L
Sbjct: 629 TTATPSLISFS---PAPTSKNEPPKSGFSLL 656


>tr|B3P9K2|B3P9K2_DROER GG12869 OS=Drosophila erecta GN=GG12869 PE=4
           SV=1
          Length = 223

 Score = 33.1 bits (74), Expect = 7.4
 Identities = 19/47 (40%), Positives = 28/47 (59%)
 Frame = +3

Query: 345 SRTWKSERRPIKLHNYSLGQSLKFTGPLRPQQSLTTVKACITT*LLL 485
           SR  + E + IKL+N+S+ Q    + P +PQQ  T +KA  TT + L
Sbjct: 75  SRPGEMEMKDIKLYNHSVPQQ---SQPTKPQQQSTAMKASTTTTMTL 118


>tr|A5K6M2|A5K6M2_PLAVI 6-phosphofructokinase, putative OS=Plasmodium
            vivax GN=PVX_099200 PE=4 SV=1
          Length = 1421

 Score = 33.1 bits (74), Expect = 7.4
 Identities = 21/89 (23%), Positives = 41/89 (46%)
 Frame = +2

Query: 218  PYLCKSLDSHLQQSRRSMTQTFFNPPHMLKHYPHSQSNIKVIFQDLEI*KKAHQVT*LFF 397
            P LC  L + ++  ++ ++   +    +L +YPH     K   Q++   K A  ++  F 
Sbjct: 779  PELCSDLKAKVRAGKQYISNDPYTQKQILSNYPHMSYENKFQIQEIFHDKYATPIS--FE 836

Query: 398  GSVSKVYRSLEAPAITYYSEGMYHNLIII 484
              +  V+ S +AP       G+YH L ++
Sbjct: 837  IKIGIVFLSRQAPGAMNVLCGLYHRLKLL 865