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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP911841
Clone id YMU001_000009_G08
Library
Length 317
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000009_G08.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
TGTTCACATCCAATGATGGTAAAAATAGGGCGAGGGCGAAGTTGAAGCATGAGTAAGTGC
GAAAGGATCGATCGATACTATGTGGGAACACCCTGTGGGAAAGCAATGTGTGTATAAGCA
TAAGGAGTGGACACAATGGGCAGGTGGCATTGGAGAGAAAAATCTTCAGGGCAACGCTTA
CTTATATGAAGGGCCACGAAGGAAAGTCAACACTGGACGATATATAAGTAAAAGAGGAGG
AGGACCCCAATTATGTTGTTTGTCTTTAAAGGGGGTTGATGCCGTTGTCATTGGGGGGGC
CATTTCGGAGGACGGAG
■■Homology search results ■■ -
sp_hit_id Q29RV1
Definition sp|Q29RV1|PDIA4_BOVIN Protein disulfide-isomerase A4 OS=Bos taurus
Align length 56
Score (bit) 31.6
E-value 1.3
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP911841|Adiantum capillus-veneris mRNA, clone:
YMU001_000009_G08.
         (317 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q29RV1|PDIA4_BOVIN Protein disulfide-isomerase A4 OS=Bos taur...    32   1.3  
sp|Q9P2S6|ANKY1_HUMAN Ankyrin repeat and MYND domain-containing ...    25   2.0  
sp|Q8IN94|OSA_DROME Trithorax group protein osa OS=Drosophila me...    31   2.2  
sp|Q5FWT8|RCOR2_RAT REST corepressor 2 OS=Rattus norvegicus GN=R...    30   3.7  
sp|P59991|KR122_HUMAN Keratin-associated protein 12-2 OS=Homo sa...    30   3.7  
sp|B0CM95|DOPP1_PAPAN Dolichyldiphosphatase 1 OS=Papio anubis GN...    30   3.7  
sp|Q9JMF7|DOPP1_MOUSE Dolichyldiphosphatase 1 OS=Mus musculus GN...    30   3.7  
sp|Q86YN1|DOPP1_HUMAN Dolichyldiphosphatase 1 OS=Homo sapiens GN...    30   3.7  
sp|B0KWE9|DOPP1_CALJA Dolichyldiphosphatase 1 OS=Callithrix jacc...    30   3.7  
sp|Q8IZ40|RCOR2_HUMAN REST corepressor 2 OS=Homo sapiens GN=RCOR...    30   4.8  
sp|P08003|PDIA4_MOUSE Protein disulfide-isomerase A4 OS=Mus musc...    30   4.8  
sp|Q1MBS9|GLGB1_RHIL3 1,4-alpha-glucan-branching enzyme 1 OS=Rhi...    30   4.8  
sp|B1MTH4|DOPP1_CALMO Dolichyldiphosphatase 1 OS=Callicebus molo...    30   4.8  
sp|Q8C796|RCOR2_MOUSE REST corepressor 2 OS=Mus musculus GN=Rcor...    29   6.3  
sp|P37439|PTGCB_SALTY PTS system glucose-specific EIICB componen...    29   6.3  
sp|P69786|PTGCB_ECOLI PTS system glucose-specific EIICB componen...    29   6.3  
sp|P69787|PTGCB_ECOL6 PTS system glucose-specific EIICB componen...    29   6.3  
sp|P69788|PTGCB_ECO57 PTS system glucose-specific EIICB componen...    29   6.3  
sp|P13667|PDIA4_HUMAN Protein disulfide-isomerase A4 OS=Homo sap...    29   6.3  
sp|P21741|MK_HUMAN Midkine OS=Homo sapiens GN=MDK PE=1 SV=1            29   6.3  

>sp|Q29RV1|PDIA4_BOVIN Protein disulfide-isomerase A4 OS=Bos taurus
           GN=PDIA4 PE=2 SV=1
          Length = 643

 Score = 31.6 bits (70), Expect = 1.3
 Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 8/56 (14%)
 Frame = +2

Query: 167 QGNAYLYEGPRRKVNTGRYISKRGGGPQLCCLSLK--------GVDAVVIGGAISE 310
           +G A+ Y GPR K     Y+ ++ G P    L+LK        G D ++IG   SE
Sbjct: 259 KGKAFSYNGPREKYGIVDYMMEQSGPPSKQILALKQVQEFLKDGDDVIIIGVFKSE 314


>sp|Q9P2S6|ANKY1_HUMAN Ankyrin repeat and MYND domain-containing
           protein 1 OS=Homo sapiens GN=ANKMY1 PE=2 SV=2
          Length = 941

 Score = 25.4 bits (54), Expect(2) = 2.0
 Identities = 10/36 (27%), Positives = 20/36 (55%)
 Frame = +2

Query: 197 RRKVNTGRYISKRGGGPQLCCLSLKGVDAVVIGGAI 304
           R++  T + + +RG  P LCC+ ++ +   V  G +
Sbjct: 524 RKRWRTIKLLLRRGADPNLCCVPMQVLFLAVKAGDV 559



 Score = 25.0 bits (53), Expect(2) = 2.0
 Identities = 15/32 (46%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
 Frame = +3

Query: 66  DRSILCG-NTLWESNVCISIRSGHNGQVALER 158
           DR  LC   T +ESNVC+   S    Q  LER
Sbjct: 457 DRGSLCSAETKFESNVCVCDFSIELSQAMLER 488


>sp|Q8IN94|OSA_DROME Trithorax group protein osa OS=Drosophila
           melanogaster GN=osa PE=1 SV=1
          Length = 2716

 Score = 30.8 bits (68), Expect = 2.2
 Identities = 23/65 (35%), Positives = 27/65 (41%), Gaps = 5/65 (7%)
 Frame = -3

Query: 315 PSSEMAPPMTTASTPFKDKQHNWGPPPLLLIYRPVLTFLRGPSYK*ALP-----*RFFSP 151
           P     PP     +P+  +Q  W PPP    Y P L    GPS +   P      R  SP
Sbjct: 261 PPGHGPPPPQHQPSPYGGQQGGWAPPP--RPYSPQL----GPSQQYRTPPPTNTSRGQSP 314

Query: 150 MPPAH 136
            PPAH
Sbjct: 315 YPPAH 319


>sp|Q5FWT8|RCOR2_RAT REST corepressor 2 OS=Rattus norvegicus
           GN=Rcor2 PE=2 SV=1
          Length = 523

 Score = 30.0 bits (66), Expect = 3.7
 Identities = 19/56 (33%), Positives = 30/56 (53%), Gaps = 7/56 (12%)
 Frame = +2

Query: 146 GIGEKNLQGNAYLYEG--PRRKVNTGRYISKRG-----GGPQLCCLSLKGVDAVVI 292
           G G+K +Q + Y +     RR+   G Y+S  G     G P L  L+L+G+D+ +I
Sbjct: 237 GPGKKEIQVSQYRHHPLRTRRRPPKGMYLSPEGLTAVSGSPDLANLTLRGLDSQLI 292


>sp|P59991|KR122_HUMAN Keratin-associated protein 12-2 OS=Homo
           sapiens GN=KRTAP12-2 PE=1 SV=1
          Length = 146

 Score = 30.0 bits (66), Expect = 3.7
 Identities = 13/29 (44%), Positives = 15/29 (51%)
 Frame = -3

Query: 156 SPMPPAHCVHSLCLYTHCFPTGCSHIVSI 70
           SP  PA CV S C  + C P GC   V +
Sbjct: 18  SPCQPACCVPSSCQASCCVPVGCQSSVCV 46


>sp|B0CM95|DOPP1_PAPAN Dolichyldiphosphatase 1 OS=Papio anubis
           GN=DOLPP1 PE=3 SV=1
          Length = 238

 Score = 30.0 bits (66), Expect = 3.7
 Identities = 17/48 (35%), Positives = 22/48 (45%)
 Frame = -1

Query: 152 QCHLPIVSTPYAYTHIAFPQGVPT*YRSILSHLLMLQLRPRPIFTIIG 9
           QC LP    P   TH+ +P G        LS  L+  L   P+F I+G
Sbjct: 6   QCSLPASWRPVTLTHVEYPAG-------DLSGHLLAYLSLSPVFVIVG 46


>sp|Q9JMF7|DOPP1_MOUSE Dolichyldiphosphatase 1 OS=Mus musculus
           GN=Dolpp1 PE=2 SV=1
          Length = 238

 Score = 30.0 bits (66), Expect = 3.7
 Identities = 17/48 (35%), Positives = 22/48 (45%)
 Frame = -1

Query: 152 QCHLPIVSTPYAYTHIAFPQGVPT*YRSILSHLLMLQLRPRPIFTIIG 9
           QC LP    P   TH+ +P G        LS  L+  L   PIF ++G
Sbjct: 6   QCSLPASWRPVTLTHVEYPAG-------DLSGHLLAYLSLSPIFVVVG 46


>sp|Q86YN1|DOPP1_HUMAN Dolichyldiphosphatase 1 OS=Homo sapiens
           GN=DOLPP1 PE=1 SV=1
          Length = 238

 Score = 30.0 bits (66), Expect = 3.7
 Identities = 17/48 (35%), Positives = 22/48 (45%)
 Frame = -1

Query: 152 QCHLPIVSTPYAYTHIAFPQGVPT*YRSILSHLLMLQLRPRPIFTIIG 9
           QC LP    P   TH+ +P G        LS  L+  L   P+F I+G
Sbjct: 6   QCSLPASWRPVTLTHVEYPAG-------DLSGHLLAYLSLSPVFVIVG 46


>sp|B0KWE9|DOPP1_CALJA Dolichyldiphosphatase 1 OS=Callithrix jacchus
           GN=DOLPP1 PE=3 SV=1
          Length = 238

 Score = 30.0 bits (66), Expect = 3.7
 Identities = 17/48 (35%), Positives = 22/48 (45%)
 Frame = -1

Query: 152 QCHLPIVSTPYAYTHIAFPQGVPT*YRSILSHLLMLQLRPRPIFTIIG 9
           QC LP    P   TH+ +P G        LS  L+  L   P+F I+G
Sbjct: 6   QCSLPASWRPVTLTHVEYPAG-------DLSGHLLAYLSLSPVFVIVG 46


>sp|Q8IZ40|RCOR2_HUMAN REST corepressor 2 OS=Homo sapiens GN=RCOR2
           PE=2 SV=2
          Length = 523

 Score = 29.6 bits (65), Expect = 4.8
 Identities = 19/56 (33%), Positives = 30/56 (53%), Gaps = 7/56 (12%)
 Frame = +2

Query: 146 GIGEKNLQGNAYLYEG--PRRKVNTGRYISKRG-----GGPQLCCLSLKGVDAVVI 292
           G G+K +Q + Y +     RR+   G Y+S  G     G P L  L+L+G+D+ +I
Sbjct: 237 GPGKKEVQVSQYRHHPLRTRRRPPKGMYLSPEGLTAVSGSPDLANLTLRGLDSQLI 292
tr_hit_id A7F5I0
Definition tr|A7F5I0|A7F5I0_SCLS1 Putative uncharacterized protein OS=Sclerotinia sclerotiorum (strain ATCC 18683 / 1980 / Ss-1)
Align length 38
Score (bit) 35.8
E-value 1.1
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP911841|Adiantum capillus-veneris mRNA, clone:
YMU001_000009_G08.
         (317 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A7F5I0|A7F5I0_SCLS1 Putative uncharacterized protein OS=Scler...    36   1.1  
tr|A6SRG6|A6SRG6_BOTFB Putative uncharacterized protein OS=Botry...    35   1.9  
tr|Q9JXK3|Q9JXK3_NEIMB Serine-type peptidase OS=Neisseria mening...    35   2.4  
tr|Q071Z8|Q071Z8_NEIME AusI OS=Neisseria meningitidis GN=ausI PE...    35   2.4  
tr|Q071Z7|Q071Z7_NEIME AusI OS=Neisseria meningitidis GN=ausI PE...    35   2.4  
tr|Q9C669|Q9C669_ARATH Putative uncharacterized protein F28B23.9...    33   7.1  

>tr|A7F5I0|A7F5I0_SCLS1 Putative uncharacterized protein
           OS=Sclerotinia sclerotiorum (strain ATCC 18683 / 1980 /
           Ss-1) GN=SS1G_12858 PE=4 SV=1
          Length = 486

 Score = 35.8 bits (81), Expect = 1.1
 Identities = 15/38 (39%), Positives = 21/38 (55%)
 Frame = +2

Query: 65  GSIDTMWEHPVGKQCVYKHKEWTQWAGGIGEKNLQGNA 178
           G ID +WEH + +  V   ++W Q  GGI   + QG A
Sbjct: 393 GVIDNLWEHEIIESVVSSIRKWEQGEGGISTSDRQGGA 430


>tr|A6SRG6|A6SRG6_BOTFB Putative uncharacterized protein
           OS=Botryotinia fuckeliana (strain B05.10) GN=BC1G_15432
           PE=4 SV=1
          Length = 432

 Score = 35.0 bits (79), Expect = 1.9
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = +2

Query: 65  GSIDTMWEHPVGKQCVYKHKEWTQWAGGIGEKNLQGNA 178
           G ID +WEH + +  V   + W +  GG+G  + QG A
Sbjct: 336 GVIDNLWEHEIIESVVSSIRRWERGEGGVGTGDRQGGA 373


>tr|Q9JXK3|Q9JXK3_NEIMB Serine-type peptidase OS=Neisseria
           meningitidis serogroup B GN=NMB1998 PE=4 SV=1
          Length = 1431

 Score = 34.7 bits (78), Expect = 2.4
 Identities = 19/47 (40%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
 Frame = +2

Query: 116 KHKEWTQWAGGIGEKNLQGNAYLYE--GPRRKVNTGRYISKRGGGPQ 250
           +H EW QW         QGNA +YE   P R   T  +I K GG P+
Sbjct: 531 EHVEWVQWGN-----RPQGNAAVYEYINPHRNRRTDYFILKPGGNPR 572


>tr|Q071Z8|Q071Z8_NEIME AusI OS=Neisseria meningitidis GN=ausI PE=4
           SV=1
          Length = 1430

 Score = 34.7 bits (78), Expect = 2.4
 Identities = 19/47 (40%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
 Frame = +2

Query: 116 KHKEWTQWAGGIGEKNLQGNAYLYE--GPRRKVNTGRYISKRGGGPQ 250
           +H EW QW         QGNA +YE   P R   T  +I K GG P+
Sbjct: 531 EHVEWVQWGN-----RPQGNAAVYEYINPHRNRRTDYFILKPGGNPR 572


>tr|Q071Z7|Q071Z7_NEIME AusI OS=Neisseria meningitidis GN=ausI PE=4
           SV=1
          Length = 1503

 Score = 34.7 bits (78), Expect = 2.4
 Identities = 19/47 (40%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
 Frame = +2

Query: 116 KHKEWTQWAGGIGEKNLQGNAYLYE--GPRRKVNTGRYISKRGGGPQ 250
           +H EW QW         QGNA +YE   P R   T  +I K GG P+
Sbjct: 531 EHVEWVQWGN-----RPQGNAAVYEYINPHRNRRTDYFILKPGGNPR 572


>tr|Q9C669|Q9C669_ARATH Putative uncharacterized protein F28B23.9
           OS=Arabidopsis thaliana GN=At1g26250 PE=4 SV=1
          Length = 443

 Score = 33.1 bits (74), Expect = 7.1
 Identities = 26/99 (26%), Positives = 42/99 (42%), Gaps = 1/99 (1%)
 Frame = -3

Query: 312 SSEMAPPMTTASTPFKDKQHNWGPPPLLLIYRPVLTFLRGPSYK*ALP*RFFSPMPPAHC 133
           +S   PP    S P      ++ PPP   +Y+P     + P Y        +SP PPA  
Sbjct: 328 TSPPPPPYVYKSPPPPPYVDSYSPPPAPYVYKPPPYVYKPPPYV-----YNYSP-PPAPY 381

Query: 132 VHSLCLYTHCF-PTGCSHIVSIDPFALTHASTSPSPYFY 19
           V+    Y + + P    ++    P+  ++ S  P+PY Y
Sbjct: 382 VYKPPPYVYSYSPPPAPYVYKPPPYVYSY-SPPPAPYVY 419