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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP911842
Clone id YMU001_000009_G09
Library
Length 574
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000009_G09.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
ATTCGCGGCCGCGAATTGTTTCAGTCTAATGTGGAATGCGGACGGGCACTTATGGATTTG
GAAAGGCTCTAAAAACTTAAACTATGGAACTATGGCGTGTGTTTCAATTGATCAGTGACA
CATTTCACCTGTTCGGATCTGCCGAAACGCGTTTCATGGTGACAAATTTTGGTGCTGTAT
ACAGTAAAGAAGGCCAGACAATTTTGAGATGGATTGTTTACATTTACTTGCATGTGGATG
CTGCTTGCCGTGGCAGTGGAGTAAGTTGATATTGGAGTTGAGTATCTCCCTTATGGAGCT
TTAACACACAAAACGGACTGTTAACCCGCTCAATTAGAGCACAAAGGGATATTGAAAGAT
TAATTGCATCACAAGCTGAGATGCATATTTGCAAGGATGTCAAGGTTATTAGAAAATGAG
GTTATTAGACCTTACACTTTTAAGATGCAAGCTGCCAAGCTAGCAAAGATTTTCAAAGCT
ACAAAACAACCACCCCGGTTTACCCCAAGGGCATGCTTATAGCTTATAGCTTATGCTCAT
GCTTATAGCTTTTTCATACGTCAGACTCGGACGA
■■Homology search results ■■ -
sp_hit_id Q6PI53
Definition sp|Q6PI53|MED24_XENLA Mediator of RNA polymerase II transcription subunit 24 OS=Xenopus laevis
Align length 45
Score (bit) 31.6
E-value 2.7
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP911842|Adiantum capillus-veneris mRNA, clone:
YMU001_000009_G09.
         (557 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q6PI53|MED24_XENLA Mediator of RNA polymerase II transcriptio...    32   2.7  
sp|Q5F3M0|MED24_CHICK Mediator of RNA polymerase II transcriptio...    31   4.7  

>sp|Q6PI53|MED24_XENLA Mediator of RNA polymerase II transcription
           subunit 24 OS=Xenopus laevis GN=med24 PE=2 SV=1
          Length = 988

 Score = 31.6 bits (70), Expect = 2.7
 Identities = 16/45 (35%), Positives = 24/45 (53%)
 Frame = -2

Query: 298 RFVC*SSIREILNSNINLLHCHGKQHPHASKCKQSISKLSGLLYC 164
           R +C  S+ EI++   + L CHGK       C+  +S L+ LL C
Sbjct: 90  RDLCIQSLLEIMDMFCDNLSCHGKAEECIGLCRALMSALNWLLRC 134


>sp|Q5F3M0|MED24_CHICK Mediator of RNA polymerase II transcription
           subunit 24 OS=Gallus gallus GN=MED24 PE=2 SV=1
          Length = 986

 Score = 30.8 bits (68), Expect = 4.7
 Identities = 15/45 (33%), Positives = 24/45 (53%)
 Frame = -2

Query: 298 RFVC*SSIREILNSNINLLHCHGKQHPHASKCKQSISKLSGLLYC 164
           R +C  S+ EI++   + L CHG+       C+  +S L+ LL C
Sbjct: 90  RDLCVQSLLEIMDMFCDRLSCHGRAEECIGLCRALMSALNWLLRC 134
tr_hit_id -
Definition No hits.
Align length -
Score (bit) -
E-value -
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP911842|Adiantum capillus-veneris mRNA, clone:
YMU001_000009_G09.
         (557 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done

 ***** No hits found ******