BP911851
Clone id YMU001_000009_H07
Library
Length 385
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000009_H07.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence
GTGATGGAATCGTCATAAAACCGTTTATGGGCTGTTGAAATGATTTCATCATCCCAAATA
TGATGGAGGTTGAATATACGACAATACCAGTGAACTTTGATGGTATTTCCACCAAGATCT
GAAGTGAAGCCTACATGAAGAGGCTGGTGAATGTCTCCAACAATGTGAGCCAAAAATAAT
AACGCTTCAGTCAAGTTGTAGTGCTGTGAATCAAAAAAAAATGTAGTCAACTGAGATGTA
TAGTTGTTGATGGCACCCGCAGCACATCTTCCTTTGATGCCTTGTGAATCATGGCAATCA
CGATCATAGTTGTATTTGCAAGAAAAATCTGGTGTATCTGATAAAATGCAATTGCACTGC
TCCACTTGTATCTGAAGCGCATTGC
■■Homology search results ■■ -
sp_hit_id P24021
Definition sp|P24021|NUS1_ASPOR Nuclease S1 OS=Aspergillus oryzae
Align length 96
Score (bit) 72.0
E-value 8.0e-13
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP911851|Adiantum capillus-veneris mRNA, clone:
YMU001_000009_H07.
(385 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|P24021|NUS1_ASPOR Nuclease S1 OS=Aspergillus oryzae GN=nucS P... 72 8e-13
sp|P24504|NUP3_PENSQ Nuclease PA3 OS=Penicillium sp. PE=1 SV=1 62 9e-10
sp|P24289|NUP1_PENCI Nuclease P1 OS=Penicillium citrinum PE=1 SV=1 62 9e-10
sp|Q70EL3|UBP50_HUMAN Inactive ubiquitin carboxyl-terminal hydro... 30 4.8
sp|Q5WIF2|Y1315_BACSK UPF0374 protein ABC1315 OS=Bacillus clausi... 29 6.3
sp|Q6B8L1|TILS_GRATL tRNA(Ile)-lysidine synthase, chloroplastic ... 29 8.2

>sp|P24021|NUS1_ASPOR Nuclease S1 OS=Aspergillus oryzae GN=nucS PE=1
SV=2
Length = 287

Score = 72.0 bits (175), Expect = 8e-13
Identities = 45/96 (46%), Positives = 53/96 (55%)
Frame = -3

Query: 338 DTPDFSCKYNYDRDCHDSQGIKGRCAAGAINNYTSQLTTFFFDSQHYNLTEALLFLAHIV 159
D P SC +YDRDC G G C+ AI NYT+ L S+ N AL F+ HI+
Sbjct: 86 DNPPQSCGVDYDRDC----GSAG-CSISAIQNYTNILLESPNGSEALN---ALKFVVHII 137

Query: 158 GDIHQPLHVGFTSDLGGNTIKVHWYCRIFNLHHIWD 51
GDIHQPLH + GGN I V + NLHHIWD
Sbjct: 138 GDIHQPLH-DENLEAGGNGIDVTYDGETTNLHHIWD 172


>sp|P24504|NUP3_PENSQ Nuclease PA3 OS=Penicillium sp. PE=1 SV=1
Length = 270

Score = 62.0 bits (149), Expect = 9e-10
Identities = 37/96 (38%), Positives = 51/96 (53%)
Frame = -3

Query: 338 DTPDFSCKYNYDRDCHDSQGIKGRCAAGAINNYTSQLTTFFFDSQHYNLTEALLFLAHIV 159
D P +C +Y+RDC S C+ AI NYT +++ S+++ EAL FL H +
Sbjct: 66 DNPPTNCNVDYERDCGSSG-----CSISAIANYTQRVSDSSLSSENH--AEALRFLVHFI 118

Query: 158 GDIHQPLHVGFTSDLGGNTIKVHWYCRIFNLHHIWD 51
GD+ QPLH +GGN I V + NLH WD
Sbjct: 119 GDMTQPLH-DEAYAVGGNKINVTFDGYHDNLHSDWD 153


>sp|P24289|NUP1_PENCI Nuclease P1 OS=Penicillium citrinum PE=1 SV=1
Length = 270

Score = 62.0 bits (149), Expect = 9e-10
Identities = 37/96 (38%), Positives = 51/96 (53%)
Frame = -3

Query: 338 DTPDFSCKYNYDRDCHDSQGIKGRCAAGAINNYTSQLTTFFFDSQHYNLTEALLFLAHIV 159
D P +C +Y+RDC S C+ AI NYT +++ S+++ EAL FL H +
Sbjct: 66 DNPPTNCNVDYERDCGSSG-----CSISAIANYTQRVSDSSLSSENH--AEALRFLVHFI 118

Query: 158 GDIHQPLHVGFTSDLGGNTIKVHWYCRIFNLHHIWD 51
GD+ QPLH +GGN I V + NLH WD
Sbjct: 119 GDMTQPLH-DEAYAVGGNKINVTFDGYHDNLHSDWD 153


>sp|Q70EL3|UBP50_HUMAN Inactive ubiquitin carboxyl-terminal
hydrolase 50 OS=Homo sapiens GN=USP50 PE=2 SV=1
Length = 339

Score = 29.6 bits (65), Expect = 4.8
Identities = 15/53 (28%), Positives = 26/53 (49%)
Frame = -3

Query: 350 CILSDTPDFSCKYNYDRDCHDSQGIKGRCAAGAINNYTSQLTTFFFDSQHYNL 192
C+L++ + KY+Y R +G RC I TS +T F + +Y++
Sbjct: 142 CVLNELHEALKKYHYSRRRSYEKGSTQRCCRKWITTETSIITQLFEEQLNYSI 194


>sp|Q5WIF2|Y1315_BACSK UPF0374 protein ABC1315 OS=Bacillus clausii
(strain KSM-K16) GN=ABC1315 PE=3 SV=1
Length = 175

Score = 29.3 bits (64), Expect = 6.3
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = -3

Query: 110 GNTIKVHWYCRIFNLHHIWDDEII 39
G+TI++H Y LH IW+D I+
Sbjct: 7 GSTIQIHSYKHNGKLHRIWEDTIV 30


>sp|Q6B8L1|TILS_GRATL tRNA(Ile)-lysidine synthase, chloroplastic
OS=Gracilaria tenuistipitata var. liui GN=tilS PE=3 SV=1
Length = 320

Score = 28.9 bits (63), Expect = 8.2
Identities = 23/74 (31%), Positives = 32/74 (43%), Gaps = 6/74 (8%)
Frame = -3

Query: 248 NNYTSQLTTFFFDSQHYNLTEALLFLAHI------VGDIHQPLHVGFTSDLGGNTIKVHW 87
+N T Q+ TF + E L L +I + I +H+ NT V W
Sbjct: 126 HNQTDQVETFLLNLMRGTGLEGLSSLPYIRKITDQIQVIRPLIHI--------NTGDVLW 177

Query: 86 YCRIFNLHHIWDDE 45
+CR FNL IW D+
Sbjct: 178 FCRKFNL-PIWSDK 190


tr_hit_id A9TE01
Definition tr|A9TE01|A9TE01_PHYPA Predicted protein (Fragment) OS=Physcomitrella patens subsp. patens
Align length 119
Score (bit) 164.0
E-value 2.0e-39
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP911851|Adiantum capillus-veneris mRNA, clone:
YMU001_000009_H07.
(385 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|A9TE01|A9TE01_PHYPA Predicted protein (Fragment) OS=Physcomit... 164 2e-39
tr|Q0JR05|Q0JR05_ORYSJ Os01g0128100 protein OS=Oryza sativa subs... 162 8e-39
tr|A2ZNU3|A2ZNU3_ORYSJ Putative uncharacterized protein OS=Oryza... 162 8e-39
tr|B6T425|B6T425_MAIZE Nuclease PA3 OS=Zea mays PE=2 SV=1 161 1e-38
tr|A7P393|A7P393_VITVI Chromosome chr1 scaffold_5, whole genome ... 160 3e-38
tr|Q9ZR88|Q9ZR88_ZINEL Bifunctional nuclease (Fragment) OS=Zinni... 159 4e-38
tr|Q9ZR87|Q9ZR87_ZINEL Bifunctional nuclease OS=Zinnia elegans G... 156 6e-37
tr|Q52PK8|Q52PK8_DIACA Putative nuclease (Fragment) OS=Dianthus ... 150 4e-35
tr|Q52PK7|Q52PK7_DIACA Putative nuclease (Fragment) OS=Dianthus ... 150 4e-35
tr|Q9LGA5|Q9LGA5_ORYSJ cDNA clone:001-030-F03, full insert seque... 147 2e-34
tr|A7R1U3|A7R1U3_VITVI Chromosome undetermined scaffold_377, who... 147 2e-34
tr|A7R1U4|A7R1U4_VITVI Chromosome undetermined scaffold_377, who... 147 3e-34
tr|B8LP38|B8LP38_PICSI Putative uncharacterized protein OS=Picea... 145 5e-34
tr|Q9ZR89|Q9ZR89_ARATH Bifunctional nuclease bfn1 OS=Arabidopsis... 145 8e-34
tr|Q9SXA6|Q9SXA6_ARATH Bifunctional nuclease bfn1 OS=Arabidopsis... 145 8e-34
tr|Q3E9X8|Q3E9X8_ARATH Uncharacterized protein At4g21585.1 OS=Ar... 144 2e-33
tr|Q0KFV0|Q0KFV0_SOLLC Putative endonuclease OS=Solanum lycopers... 144 2e-33
tr|Q6B782|Q6B782_SOLTU Endonuclease OS=Solanum tuberosum PE=2 SV=1 144 2e-33
tr|B4ERM5|B4ERM5_HUMLU Putative pre-endonuclease OS=Humulus lupu... 144 2e-33
tr|Q9C9G4|Q9C9G4_ARATH Putative bifunctional nuclease; 47147-456... 144 3e-33
tr|Q8LCL6|Q8LCL6_ARATH Putative bifunctional nuclease OS=Arabido... 144 3e-33
tr|B6U2F0|B6U2F0_MAIZE Nuclease PA3 OS=Zea mays PE=2 SV=1 143 5e-33
tr|B4FRP4|B4FRP4_MAIZE Putative uncharacterized protein OS=Zea m... 143 5e-33
tr|B2FH63|B2FH63_MAIZE Putative bifunctional nuclease OS=Zea may... 143 5e-33
tr|A5A338|A5A338_SOYBN Endonuclease OS=Glycine max GN=EN1 PE=2 SV=1 142 8e-33
tr|O80326|O80326_ZINEL Endonuclease OS=Zinnia elegans GN=ZEN1 PE... 141 2e-32
tr|B6THW1|B6THW1_MAIZE Putative uncharacterized protein OS=Zea m... 140 4e-32
tr|B4FP35|B4FP35_MAIZE Putative uncharacterized protein OS=Zea m... 140 4e-32
tr|A0MSM3|A0MSM3_SPIOL SP I mismatch endonuclease OS=Spinacia ol... 140 4e-32
tr|Q7XPN4|Q7XPN4_ORYSJ Os04g0652700 protein OS=Oryza sativa subs... 137 5e-32

>tr|A9TE01|A9TE01_PHYPA Predicted protein (Fragment)
OS=Physcomitrella patens subsp. patens
GN=PHYPADRAFT_5363 PE=4 SV=1
Length = 286

Score = 164 bits (416), Expect = 2e-39
Identities = 78/119 (65%), Positives = 90/119 (75%), Gaps = 7/119 (5%)
Frame = -3

Query: 338 DTPDFSCKYNYDRDCHDSQGIKGRCAAGAINNYTSQLTTFFFD-------SQHYNLTEAL 180
DTPDF C+Y+YDRDCHD G KG CA+GAINN+TSQLT + ++ +NLTEAL
Sbjct: 76 DTPDFLCRYDYDRDCHDQHGQKGFCASGAINNFTSQLTNYELPKASRPLLTKTHNLTEAL 135

Query: 179 LFLAHIVGDIHQPLHVGFTSDLGGNTIKVHWYCRIFNLHHIWDDEIISTAHKRFYDDSI 3
LFLAHIVGDIHQPLHVGFTSD GGNTI VHWY R NLHHIWD E+I A +Y+ S+
Sbjct: 136 LFLAHIVGDIHQPLHVGFTSDAGGNTITVHWYRRKTNLHHIWDTEMIVKAEDVYYNKSL 194


>tr|Q0JR05|Q0JR05_ORYSJ Os01g0128100 protein OS=Oryza sativa subsp.
japonica GN=Os01g0128100 PE=4 SV=1
Length = 291

Score = 162 bits (410), Expect = 8e-39
Identities = 75/114 (65%), Positives = 82/114 (71%), Gaps = 2/114 (1%)
Frame = -3

Query: 338 DTPDFSCKYNYDRDCHDSQGIKGRCAAGAINNYTSQLTTF--FFDSQHYNLTEALLFLAH 165
DTPD C Y YDRDC D +GRC AGAINNYTSQL T+ S YNLT+ALLFLAH
Sbjct: 88 DTPDHLCSYTYDRDCKDEDSFRGRCVAGAINNYTSQLLTYDATSPSTQYNLTQALLFLAH 147

Query: 164 IVGDIHQPLHVGFTSDLGGNTIKVHWYCRIFNLHHIWDDEIISTAHKRFYDDSI 3
VGDIHQPLHVGFTSD GGNTI VHWY R LHH+WDD II TA +Y + +
Sbjct: 148 FVGDIHQPLHVGFTSDKGGNTIDVHWYTRKTVLHHVWDDNIIKTAENDYYGEGV 201


>tr|A2ZNU3|A2ZNU3_ORYSJ Putative uncharacterized protein OS=Oryza
sativa subsp. japonica GN=OsJ_000215 PE=4 SV=1
Length = 285

Score = 162 bits (410), Expect = 8e-39
Identities = 75/114 (65%), Positives = 82/114 (71%), Gaps = 2/114 (1%)
Frame = -3

Query: 338 DTPDFSCKYNYDRDCHDSQGIKGRCAAGAINNYTSQLTTF--FFDSQHYNLTEALLFLAH 165
DTPD C Y YDRDC D +GRC AGAINNYTSQL T+ S YNLT+ALLFLAH
Sbjct: 82 DTPDHLCSYTYDRDCKDEDSFRGRCVAGAINNYTSQLLTYDATSPSTQYNLTQALLFLAH 141

Query: 164 IVGDIHQPLHVGFTSDLGGNTIKVHWYCRIFNLHHIWDDEIISTAHKRFYDDSI 3
VGDIHQPLHVGFTSD GGNTI VHWY R LHH+WDD II TA +Y + +
Sbjct: 142 FVGDIHQPLHVGFTSDKGGNTIDVHWYTRKTVLHHVWDDNIIKTAENDYYGEGV 195


>tr|B6T425|B6T425_MAIZE Nuclease PA3 OS=Zea mays PE=2 SV=1
Length = 329

Score = 161 bits (408), Expect = 1e-38
Identities = 75/113 (66%), Positives = 83/113 (73%), Gaps = 1/113 (0%)
Frame = -3

Query: 338 DTPDFSCKYNYDRDCHDSQGIKGRCAAGAINNYTSQLTTFFFDSQ-HYNLTEALLFLAHI 162
DTPD C Y YDRDC D G++GRC AGAINNYTSQL + S YNLT+ALLFL+H
Sbjct: 126 DTPDGLCTYRYDRDCKDEDGVEGRCVAGAINNYTSQLLAYRRSSPTEYNLTQALLFLSHF 185

Query: 161 VGDIHQPLHVGFTSDLGGNTIKVHWYCRIFNLHHIWDDEIISTAHKRFYDDSI 3
+GDIHQPLHVGFTSD GGNTI VHWY R LHH+WD II TA FY DS+
Sbjct: 186 IGDIHQPLHVGFTSDKGGNTIDVHWYTRKTVLHHVWDASIIQTAEDDFYGDSV 238


>tr|A7P393|A7P393_VITVI Chromosome chr1 scaffold_5, whole genome
shotgun sequence OS=Vitis vinifera GN=GSVIVT00030352001
PE=4 SV=1
Length = 285

Score = 160 bits (405), Expect(2) = 3e-38
Identities = 71/112 (63%), Positives = 84/112 (75%)
Frame = -3

Query: 338 DTPDFSCKYNYDRDCHDSQGIKGRCAAGAINNYTSQLTTFFFDSQHYNLTEALLFLAHIV 159
+TPD C Y Y RDC D G+KGRC AGAINNYTSQL T+ YNLTEALLFL+H++
Sbjct: 84 NTPDDLCTYQYTRDCKDEDGVKGRCVAGAINNYTSQLLTYGSSQADYNLTEALLFLSHLM 143

Query: 158 GDIHQPLHVGFTSDLGGNTIKVHWYCRIFNLHHIWDDEIISTAHKRFYDDSI 3
GD+HQPLHVGFT+D GGNTI V WY R LHH+WD II TA ++FYD ++
Sbjct: 144 GDVHQPLHVGFTTDKGGNTIDVKWYNRKTVLHHVWDTNIIETAEEQFYDSNV 195



Score = 21.6 bits (44), Expect(2) = 3e-38
Identities = 7/13 (53%), Positives = 10/13 (76%)
Frame = -1

Query: 382 MRFRYKWSSAIAF 344
++FRY WSS + F
Sbjct: 70 VKFRYHWSSPLHF 82


>tr|Q9ZR88|Q9ZR88_ZINEL Bifunctional nuclease (Fragment) OS=Zinnia
elegans GN=nucZe1 PE=4 SV=1
Length = 280

Score = 159 bits (401), Expect(2) = 4e-38
Identities = 71/112 (63%), Positives = 82/112 (73%)
Frame = -3

Query: 338 DTPDFSCKYNYDRDCHDSQGIKGRCAAGAINNYTSQLTTFFFDSQHYNLTEALLFLAHIV 159
DTPD C Y Y RDC D G+ GRC AGAI NYT+QL + + YNLTEALLFL+H +
Sbjct: 79 DTPDNLCTYQYRRDCKDEDGVMGRCVAGAIMNYTTQLLDYGKQTSQYNLTEALLFLSHFM 138

Query: 158 GDIHQPLHVGFTSDLGGNTIKVHWYCRIFNLHHIWDDEIISTAHKRFYDDSI 3
GDIHQPLHVGFTSD GGNTI VHW+ R LHH+WDD II TA +RFY ++
Sbjct: 139 GDIHQPLHVGFTSDRGGNTIDVHWFTRKAVLHHVWDDSIIETAEERFYGSNV 190



Score = 22.3 bits (46), Expect(2) = 4e-38
Identities = 7/13 (53%), Positives = 11/13 (84%)
Frame = -1

Query: 382 MRFRYKWSSAIAF 344
++FRY WSSA+ +
Sbjct: 65 VKFRYHWSSALHY 77


>tr|Q9ZR87|Q9ZR87_ZINEL Bifunctional nuclease OS=Zinnia elegans
GN=nucZe2 PE=4 SV=1
Length = 328

Score = 156 bits (394), Expect = 6e-37
Identities = 73/115 (63%), Positives = 83/115 (72%), Gaps = 3/115 (2%)
Frame = -3

Query: 338 DTPDFSCKYNYDRDCHDSQGIKGRCAAGAINNYTSQLTTFFFDSQH---YNLTEALLFLA 168
DTPDF C Y+Y RDCHDS G+K RC GAI NYT QL T + S YNLTEAL+FL+
Sbjct: 89 DTPDFRCNYDYCRDCHDSSGVKDRCVTGAIYNYTEQLITGYNASNSVVKYNLTEALMFLS 148

Query: 167 HIVGDIHQPLHVGFTSDLGGNTIKVHWYCRIFNLHHIWDDEIISTAHKRFYDDSI 3
H +GD+HQPLHV FTSD GGNTI V WY R NLHHIWD ++I +A K FYD I
Sbjct: 149 HYIGDVHQPLHVSFTSDEGGNTIIVRWYKRKTNLHHIWDTDMIESAMKTFYDKDI 203


>tr|Q52PK8|Q52PK8_DIACA Putative nuclease (Fragment) OS=Dianthus
caryophyllus PE=2 SV=1
Length = 263

Score = 150 bits (378), Expect = 4e-35
Identities = 68/114 (59%), Positives = 83/114 (72%), Gaps = 2/114 (1%)
Frame = -3

Query: 338 DTPDFSCKYNYDRDCHDSQGIKGRCAAGAINNYTSQLTTFFFDS--QHYNLTEALLFLAH 165
D PD SC +NYDRDCHDS G+K C AGAI NYTSQL + S + YN+TEALLFL+H
Sbjct: 75 DAPDDSCSFNYDRDCHDSHGVKDMCVAGAIQNYTSQLQHYREGSSDRRYNMTEALLFLSH 134

Query: 164 IVGDIHQPLHVGFTSDLGGNTIKVHWYCRIFNLHHIWDDEIISTAHKRFYDDSI 3
+GDIHQP+H G T+D GGNTI++ W+ NLHH+WD EII TA K +YD +
Sbjct: 135 FMGDIHQPMHCGHTTDEGGNTIELRWFKHKSNLHHVWDREIILTAMKDYYDKDV 188


>tr|Q52PK7|Q52PK7_DIACA Putative nuclease (Fragment) OS=Dianthus
caryophyllus PE=2 SV=1
Length = 219

Score = 150 bits (378), Expect = 4e-35
Identities = 68/114 (59%), Positives = 83/114 (72%), Gaps = 2/114 (1%)
Frame = -3

Query: 338 DTPDFSCKYNYDRDCHDSQGIKGRCAAGAINNYTSQLTTFFFDS--QHYNLTEALLFLAH 165
D PD SC +NYDRDCHDS G+K C AGAI NYTSQL + S + YN+TEALLFL+H
Sbjct: 20 DAPDDSCSFNYDRDCHDSHGVKDMCVAGAIQNYTSQLQHYREGSSDRRYNMTEALLFLSH 79

Query: 164 IVGDIHQPLHVGFTSDLGGNTIKVHWYCRIFNLHHIWDDEIISTAHKRFYDDSI 3
+GDIHQP+H G T+D GGNTI++ W+ NLHH+WD EII TA K +YD +
Sbjct: 80 FMGDIHQPMHCGHTTDEGGNTIELRWFKHKSNLHHVWDREIILTAMKDYYDKDV 133


>tr|Q9LGA5|Q9LGA5_ORYSJ cDNA clone:001-030-F03, full insert sequence
OS=Oryza sativa subsp. japonica GN=P0408F06.1 PE=2 SV=1
Length = 308

Score = 147 bits (372), Expect = 2e-34
Identities = 67/113 (59%), Positives = 82/113 (72%)
Frame = -3

Query: 341 SDTPDFSCKYNYDRDCHDSQGIKGRCAAGAINNYTSQLTTFFFDSQHYNLTEALLFLAHI 162
++TP C + Y RDCH+S+ +G C GAINNYT QL ++ YNLTE+L+FLAH
Sbjct: 93 ANTPQV-CNFKYSRDCHNSRHQQGMCVVGAINNYTDQLYSYGDSKSSYNLTESLMFLAHF 151

Query: 161 VGDIHQPLHVGFTSDLGGNTIKVHWYCRIFNLHHIWDDEIISTAHKRFYDDSI 3
VGD+HQPLHVGF D GGNTIKVHWY R NLHH+WD+ II TA K FY+ S+
Sbjct: 152 VGDVHQPLHVGFEEDEGGNTIKVHWYRRKENLHHVWDNSIIETAMKDFYNRSL 204