BP911855 |
Clone id |
YMU001_000010_A06 |
Library |
YMU01 |
Length |
542 |
Definition |
Adiantum capillus-veneris mRNA. clone: YMU001_000010_A06. |
Accession |
BP911855 |
Tissue type |
prothallium |
Developmental stage |
- |
Contig ID |
CL282Contig1 |
Sequence |
ATGCTTCGTAGACATCATCATTTACACAAAAGGGTATAACTTTTACTTTATTTTTTAATT TTTTGGGATAGAGCCGGCAAGCCGGGAAGAGGGTATAACCATGGATATTGGTTGTGCCTT TGTGGTCTCTGGCTTTTCTTTGAGTGGTCACTTTACCTTTGCTTATAGCAATTGGTGTTA TAAAATATCTTCTTTGCTCCATAATACAACAGATTATATTGACTAATGAACCTCAGCTTT CTACAGGCCTTGTATCTGTAAGATGAAAATTTGGAAAACTCCTCAAGATACTACACCATG GGAGAGGAGACCTACAGTCACAAATGGTCCTTGGTAGGAAAGGACTGACTCCTTGGATTT CTTCAAGTGGCAGTAACCCCTCTCTTCTATTAACATACTCTACAGCCTCTTCTGCAGTAA CCCGGCTGCTCTGATGTACCAATCATGTAGGTTGGATTCTTTTGGCATTCTCCATATGCT GCCCATTCACCGCAACTCTCATCCTCGTCTTTGCAATCTCCTACATCTCGCGCTGGGGAA TC |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q19673 |
Definition |
sp|Q19673|TYR3_CAEEL Putative tyrosinase-like protein tyr-3 OS=Caenorhabditis elegans |
Align length |
24 |
Score (bit) |
43.1 |
E-value |
0.0009 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= BP911855|Adiantum capillus-veneris mRNA, clone: YMU001_000010_A06. (542 letters)
Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
sp|Q19673|TYR3_CAEEL Putative tyrosinase-like protein tyr-3 OS=C... 43 9e-04 sp|Q97A95|TRI_THEVO Tricorn protease OS=Thermoplasma volcanium G... 34 0.53 sp|Q7NTL6|HLDD_CHRVO ADP-L-glycero-D-manno-heptose-6-epimerase O... 33 0.69 sp|O08742|GPV_MOUSE Platelet glycoprotein V OS=Mus musculus GN=G... 32 1.5 sp|O08770|GPV_RAT Platelet glycoprotein V OS=Rattus norvegicus G... 32 2.0 sp|P34269|TYR1_CAEEL Putative tyrosinase-like protein tyr-1 OS=C... 32 2.6 sp|O03199|ATP8_CERSI ATP synthase protein 8 OS=Ceratotherium sim... 31 4.5 sp|P60781|RNP3_METMP Ribonuclease P protein component 3 OS=Metha... 30 9.9 sp|P34243|HCS1_YEAST DNA polymerase alpha-associated DNA helicas... 30 9.9 sp|Q9VGB4|CP132_DROME Probable cytochrome P450 313a2 OS=Drosophi... 30 9.9
>sp|Q19673|TYR3_CAEEL Putative tyrosinase-like protein tyr-3 OS=Caenorhabditis elegans GN=tyr-3 PE=2 SV=5 Length = 693
Score = 43.1 bits (100), Expect = 9e-04 Identities = 16/24 (66%), Positives = 19/24 (79%) Frame = -1
Query: 515 CKDEDESCGEWAAYGECQKNPTYM 444 C +E+E CG W+A GECQKNP YM Sbjct: 472 CFNENECCGPWSAKGECQKNPVYM 495
Score = 34.3 bits (77), Expect = 0.40 Identities = 12/24 (50%), Positives = 16/24 (66%) Frame = -1
Query: 515 CKDEDESCGEWAAYGECQKNPTYM 444 C +ED+ C WA G+C+ NP YM Sbjct: 591 CYNEDQCCPIWAQRGQCRSNPGYM 614
Score = 33.9 bits (76), Expect = 0.53 Identities = 11/25 (44%), Positives = 15/25 (60%) Frame = -1
Query: 518 DCKDEDESCGEWAAYGECQKNPTYM 444 +C D +C W+ GEC KNP +M Sbjct: 515 ECSDRHTNCAMWSRSGECNKNPLWM 539
>sp|Q97A95|TRI_THEVO Tricorn protease OS=Thermoplasma volcanium GN=tri PE=3 SV=1 Length = 1030
Score = 33.9 bits (76), Expect = 0.53 Identities = 25/75 (33%), Positives = 33/75 (44%), Gaps = 2/75 (2%) Frame = -2
Query: 226 LVNIICC--IMEQRRYFITPIAISKGKVTTQRKARDHKGTTNIHGYTLFPACRLYPKKLK 53 L N I C I++ R YFIT I + +T D K T+ H Y YP+ L Sbjct: 188 LENHISCPVIVKDRIYFITDIDGAGNIYSTNLDGNDLKKHTDFHEY--------YPRHLN 239
Query: 52 NKVKVIPFCVNDDVY 8 K I F + D+Y Sbjct: 240 TDGKTIVFSMGGDIY 254
>sp|Q7NTL6|HLDD_CHRVO ADP-L-glycero-D-manno-heptose-6-epimerase OS=Chromobacterium violaceum GN=hldD PE=3 SV=1 Length = 333
Score = 33.5 bits (75), Expect = 0.69 Identities = 16/56 (28%), Positives = 31/56 (55%) Frame = -2
Query: 208 CIMEQRRYFITPIAISKGKVTTQRKARDHKGTTNIHGYTLFPACRLYPKKLKNKVK 41 C E+ ++ A + GK T ++ R H+G N++GY+ F L+ + L+ ++K Sbjct: 105 CQHEEIQFLYASSAATYGKGTVFKEERQHEGPLNVYGYSKF----LFDQVLRQRIK 156
>sp|O08742|GPV_MOUSE Platelet glycoprotein V OS=Mus musculus GN=Gp5 PE=2 SV=1 Length = 567
Score = 32.3 bits (72), Expect = 1.5 Identities = 10/16 (62%), Positives = 11/16 (68%) Frame = +1
Query: 100 HGYWLCLCGLWLFFEW 147 H WLC CGLW F +W Sbjct: 420 HNPWLCDCGLWRFLQW 435
>sp|O08770|GPV_RAT Platelet glycoprotein V OS=Rattus norvegicus GN=Gp5 PE=2 SV=1 Length = 567
Score = 32.0 bits (71), Expect = 2.0 Identities = 10/16 (62%), Positives = 11/16 (68%) Frame = +1
Query: 100 HGYWLCLCGLWLFFEW 147 H WLC CGLW F +W Sbjct: 420 HNPWLCDCGLWPFLQW 435
>sp|P34269|TYR1_CAEEL Putative tyrosinase-like protein tyr-1 OS=Caenorhabditis elegans GN=tyr-1 PE=1 SV=2 Length = 601
Score = 31.6 bits (70), Expect = 2.6 Identities = 10/25 (40%), Positives = 15/25 (60%) Frame = -1
Query: 518 DCKDEDESCGEWAAYGECQKNPTYM 444 +C +ED C +W+ EC+ N YM Sbjct: 479 NCYNEDPCCNQWSRQNECRTNTVYM 503
>sp|O03199|ATP8_CERSI ATP synthase protein 8 OS=Ceratotherium simum GN=MT-ATP8 PE=3 SV=1 Length = 68
Score = 30.8 bits (68), Expect = 4.5 Identities = 18/55 (32%), Positives = 25/55 (45%) Frame = +2
Query: 167 SNWCYKISSLLHNTTDYID**TSAFYRPCICKMKIWKTPQDTTPWERRPTVTNGP 331 S W I S++ S + P ++K+ KTP TTPWE + T T P Sbjct: 7 STWSITIVSMIITLFIMFQLKLSKYSYPSSPELKLTKTPTHTTPWESKWTKTYLP 61
>sp|P60781|RNP3_METMP Ribonuclease P protein component 3 OS=Methanococcus maripaludis GN=rnp3 PE=3 SV=1 Length = 232
Score = 29.6 bits (65), Expect = 9.9 Identities = 19/50 (38%), Positives = 27/50 (54%), Gaps = 4/50 (8%) Frame = +3
Query: 240 STGLVSVR*KFGKLLKILHHGRGDL----QSQMVLGRKGLTPWISSSGSN 377 ST V+V FG LLK ++ R + Q + L +K TP + SSG+N Sbjct: 127 STNRVAVELNFGNLLKSKNYDRSKILWAFQRNLKLSKKYDTPVVISSGAN 176
>sp|P34243|HCS1_YEAST DNA polymerase alpha-associated DNA helicase A OS=Saccharomyces cerevisiae GN=HCS1 PE=1 SV=1 Length = 683
Score = 29.6 bits (65), Expect = 9.9 Identities = 24/101 (23%), Positives = 42/101 (41%), Gaps = 4/101 (3%) Frame = -2
Query: 295 CSILRSFPNFHLTDTRPVES*GSLVNIIC---CIMEQRRYFITPIAISKGKVTTQRKARD 125 CS+ R PNF L DT ++ + C I Q ++ +A ++ K D Sbjct: 377 CSLYRDDPNFQLFDTLIIDEVSQAMEPQCWIPLIAHQNQFHKLVLAGDNKQLPPTIKTED 436
Query: 124 HKGTTNIHGYTLFP-ACRLYPKKLKNKVKVIPFCVNDDVYE 5 K + TLF +++PK+ K + + +N + E Sbjct: 437 DKNVIHNLETTLFDRIIKIFPKRDMVKFLNVQYRMNQKIME 477
>sp|Q9VGB4|CP132_DROME Probable cytochrome P450 313a2 OS=Drosophila melanogaster GN=Cyp313a2 PE=3 SV=3 Length = 493
Score = 29.6 bits (65), Expect = 9.9 Identities = 15/51 (29%), Positives = 25/51 (49%) Frame = -2
Query: 172 IAISKGKVTTQRKARDHKGTTNIHGYTLFPACRLYPKKLKNKVKVIPFCVN 20 + IS+GK++++ D G+T + P K+ KV PFC+N Sbjct: 48 LIISRGKMSSRTTYMDKHGSTYMAWIGTTPIVITRDPKIAEKVLTSPFCIN 98
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A9TA62 |
Definition |
tr|A9TA62|A9TA62_PHYPA Predicted protein (Fragment) OS=Physcomitrella patens subsp. patens |
Align length |
42 |
Score (bit) |
63.2 |
E-value |
9.0e-09 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= BP911855|Adiantum capillus-veneris mRNA, clone: YMU001_000010_A06. (542 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|A9TA62|A9TA62_PHYPA Predicted protein (Fragment) OS=Physcomit... 63 9e-09 tr|B4FLB6|B4FLB6_MAIZE Oxidoreductase OS=Zea mays PE=2 SV=1 59 1e-07 tr|Q6AVM9|Q6AVM9_ORYSJ Os05g0489100 protein OS=Oryza sativa subs... 58 4e-07 tr|A2Y5Z3|A2Y5Z3_ORYSI Putative uncharacterized protein OS=Oryza... 58 4e-07 tr|Q8RWK0|Q8RWK0_ARATH Putative uncharacterized protein At5g1890... 57 6e-07 tr|Q8LAN3|Q8LAN3_ARATH Prolyl 4-hydroxylase alpha subunit-like p... 57 6e-07 tr|A9NS85|A9NS85_PICSI Putative uncharacterized protein OS=Picea... 57 6e-07 tr|Q9M0K1|Q9M0K1_ARATH Putative uncharacterized protein AT4g2560... 56 1e-06 tr|Q8GXT7|Q8GXT7_ARATH Putative uncharacterized protein At4g2560... 56 1e-06 tr|O65602|O65602_ARATH Putative uncharacterized protein M7J2.30 ... 56 1e-06 tr|B6ZN57|B6ZN57_TOBAC Type 2 proly 4-hydroxylase OS=Nicotiana t... 56 1e-06 tr|A7PMI3|A7PMI3_VITVI Chromosome chr14 scaffold_21, whole genom... 55 2e-06 tr|A7NWB3|A7NWB3_VITVI Chromosome chr5 scaffold_2, whole genome ... 55 2e-06 tr|B8APC3|B8APC3_ORYSI Putative uncharacterized protein OS=Oryza... 55 3e-06 tr|A7QG22|A7QG22_VITVI Chromosome undetermined scaffold_91, whol... 55 3e-06 tr|Q338D2|Q338D2_ORYSJ Prolyl 4-hydroxylase, putative, expressed... 54 4e-06 tr|Q109P7|Q109P7_ORYSJ Os10g0413500 protein OS=Oryza sativa subs... 54 4e-06 tr|B8BGT2|B8BGT2_ORYSI Putative uncharacterized protein OS=Oryza... 54 4e-06 tr|A3C4P9|A3C4P9_ORYSJ Putative uncharacterized protein OS=Oryza... 54 4e-06 tr|A1YAC2|A1YAC2_DIACA Prolyl 4-hydroxylase OS=Dianthus caryophy... 54 5e-06 tr|Q5GAV6|Q5GAV6_MAIZE Putative uncharacterized protein OS=Zea m... 54 7e-06 tr|Q10RA7|Q10RA7_ORYSJ Prolyl 4-hydroxylase, putative, expressed... 54 7e-06 tr|Q0DUV1|Q0DUV1_ORYSJ Os03g0166200 protein OS=Oryza sativa subs... 54 7e-06 tr|A2XCX2|A2XCX2_ORYSI Putative uncharacterized protein OS=Oryza... 53 9e-06 tr|Q9SQT3|Q9SQT3_ARATH F24P17.24 protein OS=Arabidopsis thaliana... 53 1e-05 tr|Q8L8T9|Q8L8T9_ARATH Prolyl 4-hydroxylase alpha subunit-like p... 53 1e-05 tr|Q0WP28|Q0WP28_ARATH Putative uncharacterized protein At3g0630... 53 1e-05 tr|B6TED5|B6TED5_MAIZE Prolyl 4-hydroxylase OS=Zea mays PE=2 SV=1 53 1e-05 tr|B4FGT5|B4FGT5_MAIZE Putative uncharacterized protein OS=Zea m... 53 1e-05 tr|Q9LSI6|Q9LSI6_ARATH Prolyl 4-hydroxylase alpha subunit-like p... 52 2e-05
>tr|A9TA62|A9TA62_PHYPA Predicted protein (Fragment) OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_16503 PE=4 SV=1 Length = 263
Score = 63.2 bits (152), Expect = 9e-09 Identities = 26/42 (61%), Positives = 30/42 (71%) Frame = -1
Query: 542 DSPARDVGDCKDEDESCGEWAAYGECQKNPTYMIGTSEQPGY 417 + P G C +E +SC EWAAYGECQKNP YM+GT E PGY Sbjct: 214 EKPRPKNGACVNEVDSCEEWAAYGECQKNPAYMVGTKEWPGY 255
>tr|B4FLB6|B4FLB6_MAIZE Oxidoreductase OS=Zea mays PE=2 SV=1 Length = 308
Score = 59.3 bits (142), Expect = 1e-07 Identities = 23/35 (65%), Positives = 28/35 (80%) Frame = -1
Query: 521 GDCKDEDESCGEWAAYGECQKNPTYMIGTSEQPGY 417 G+C DE+ESC +WAA GEC KNP YM+GT+ PGY Sbjct: 266 GNCTDENESCAKWAALGECIKNPEYMVGTTALPGY 300
>tr|Q6AVM9|Q6AVM9_ORYSJ Os05g0489100 protein OS=Oryza sativa subsp. japonica GN=OJ1119_H02.14 PE=2 SV=1 Length = 319
Score = 57.8 bits (138), Expect = 4e-07 Identities = 23/35 (65%), Positives = 28/35 (80%) Frame = -1
Query: 521 GDCKDEDESCGEWAAYGECQKNPTYMIGTSEQPGY 417 G+C D++ESC +WAA GEC KNP YMIGT+ PGY Sbjct: 277 GNCTDDNESCEKWAALGECIKNPEYMIGTAALPGY 311
>tr|A2Y5Z3|A2Y5Z3_ORYSI Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_20415 PE=4 SV=1 Length = 319
Score = 57.8 bits (138), Expect = 4e-07 Identities = 23/35 (65%), Positives = 28/35 (80%) Frame = -1
Query: 521 GDCKDEDESCGEWAAYGECQKNPTYMIGTSEQPGY 417 G+C D++ESC +WAA GEC KNP YMIGT+ PGY Sbjct: 277 GNCTDDNESCEKWAALGECIKNPEYMIGTAALPGY 311
>tr|Q8RWK0|Q8RWK0_ARATH Putative uncharacterized protein At5g18900 OS=Arabidopsis thaliana GN=At5g18900 PE=2 SV=1 Length = 298
Score = 57.0 bits (136), Expect = 6e-07 Identities = 22/35 (62%), Positives = 26/35 (74%) Frame = -1
Query: 521 GDCKDEDESCGEWAAYGECQKNPTYMIGTSEQPGY 417 G+C D +ESC WA GEC KNP YM+GT+E PGY Sbjct: 256 GNCTDMNESCERWAVLGECTKNPEYMVGTTELPGY 290
>tr|Q8LAN3|Q8LAN3_ARATH Prolyl 4-hydroxylase alpha subunit-like protein OS=Arabidopsis thaliana PE=2 SV=1 Length = 298
Score = 57.0 bits (136), Expect = 6e-07 Identities = 22/35 (62%), Positives = 26/35 (74%) Frame = -1
Query: 521 GDCKDEDESCGEWAAYGECQKNPTYMIGTSEQPGY 417 G+C D +ESC WA GEC KNP YM+GT+E PGY Sbjct: 256 GNCTDMNESCERWAVLGECTKNPEYMVGTTELPGY 290
>tr|A9NS85|A9NS85_PICSI Putative uncharacterized protein OS=Picea sitchensis PE=2 SV=1 Length = 208
Score = 57.0 bits (136), Expect = 6e-07 Identities = 21/41 (51%), Positives = 28/41 (68%) Frame = -1
Query: 542 DSPARDVGDCKDEDESCGEWAAYGECQKNPTYMIGTSEQPG 420 D P + +C D++ CGEWAAYGEC NP YM+G+ + PG Sbjct: 159 DKPRQSSDNCVDQNPRCGEWAAYGECNNNPIYMLGSPDLPG 199
>tr|Q9M0K1|Q9M0K1_ARATH Putative uncharacterized protein AT4g25600 (Fragment) OS=Arabidopsis thaliana GN=AT4g25600 PE=4 SV=1 Length = 315
Score = 55.8 bits (133), Expect = 1e-06 Identities = 21/34 (61%), Positives = 26/34 (76%) Frame = -1
Query: 521 GDCKDEDESCGEWAAYGECQKNPTYMIGTSEQPG 420 G+C DEDE+CG WA GEC+KNP YMIG+ + G Sbjct: 273 GECSDEDENCGRWAKLGECKKNPVYMIGSPDYYG 306
>tr|Q8GXT7|Q8GXT7_ARATH Putative uncharacterized protein At4g25600/M7J2_30 (Putative uncharacterized protein At4g25600) OS=Arabidopsis thaliana GN=At4g25600/M7J2_30 PE=2 SV=1 Length = 291
Score = 55.8 bits (133), Expect = 1e-06 Identities = 21/34 (61%), Positives = 26/34 (76%) Frame = -1
Query: 521 GDCKDEDESCGEWAAYGECQKNPTYMIGTSEQPG 420 G+C DEDE+CG WA GEC+KNP YMIG+ + G Sbjct: 249 GECSDEDENCGRWAKLGECKKNPVYMIGSPDYYG 282
>tr|O65602|O65602_ARATH Putative uncharacterized protein M7J2.30 OS=Arabidopsis thaliana GN=M7J2.30 PE=4 SV=1 Length = 316
Score = 55.8 bits (133), Expect = 1e-06 Identities = 21/34 (61%), Positives = 26/34 (76%) Frame = -1
Query: 521 GDCKDEDESCGEWAAYGECQKNPTYMIGTSEQPG 420 G+C DEDE+CG WA GEC+KNP YMIG+ + G Sbjct: 274 GECSDEDENCGRWAKLGECKKNPVYMIGSPDYYG 307
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