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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP911859
Clone id YMU001_000010_A10
Library
Length 266
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000010_A10.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
ATAACGAGGCGTATTGTAAACAGAATGAGTACACCTGTTCCATGTCAGCGTAATATGGGT
TTTACAGCCCACTCCCGCTCTTTTCTCTTCATCCTTGCTTGCATCTTGTCGAACTTTTCT
TGACCCTTCTCAACCAAAAGATCATAAAGAACGTATTGCTCAGGGTCGTCATTCCGGGCC
ATCTCATCCCTTTTCCCTTTTGCTGAATTGAATACCAAACGATGTGTTAGCCATCCAGAG
TCATCATCTTCTGCAGCGCTGACGTC
■■Homology search results ■■ -
sp_hit_id P0C1J2
Definition sp|P0C1J2|CWC27_RHIOR Peptidyl-prolyl isomerase cwc27 OS=Rhizopus oryzae
Align length 40
Score (bit) 34.7
E-value 0.15
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP911859|Adiantum capillus-veneris mRNA, clone:
YMU001_000010_A10.
         (266 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P0C1J2|CWC27_RHIOR Peptidyl-prolyl isomerase cwc27 OS=Rhizopu...    35   0.15 
sp|Q6GLX7|SDC10_XENLA Peptidyl-prolyl cis-trans isomerase SDCCAG...    33   0.45 
sp|Q17QX9|SDC10_BOVIN Peptidyl-prolyl cis-trans isomerase SDCCAG...    32   0.76 
sp|Q4IPB3|CWC27_GIBZE Peptidyl-prolyl isomerase CWC27 OS=Gibbere...    32   0.76 
sp|Q7ZW86|SDC10_DANRE Peptidyl-prolyl cis-trans isomerase SDCCAG...    32   1.00 
sp|A0JP80|FIT2_XENTR Protein FIT2 homolog OS=Xenopus tropicalis ...    31   2.2  
sp|Q5R7W3|SDC10_PONAB Peptidyl-prolyl cis-trans isomerase SDCCAG...    30   2.9  
sp|Q4R713|SDC10_MACFA Peptidyl-prolyl cis-trans isomerase SDCCAG...    30   2.9  
sp|Q6UX04|SDC10_HUMAN Peptidyl-prolyl cis-trans isomerase SDCCAG...    30   2.9  
sp|Q5F450|PAN2_CHICK PAB-dependent poly(A)-specific ribonuclease...    30   2.9  
sp|Q7SBX8|CWC27_NEUCR Peptidyl-prolyl isomerase cwc-27 OS=Neuros...    30   2.9  
sp|Q9BWV7|TTLL2_HUMAN Probable tubulin polyglutamylase TTLL2 OS=...    30   3.8  
sp|Q5XIB2|SDC10_RAT Peptidyl-prolyl cis-trans isomerase SDCCAG10...    30   3.8  
sp|Q3TKY6|SDC10_MOUSE Peptidyl-prolyl cis-trans isomerase SDCCAG...    30   3.8  
sp|Q98630|VP3_RDVF Major 114 kDa structural protein OS=Rice dwar...    29   8.5  
sp|A5N4P0|RPOC_CLOK5 DNA-directed RNA polymerase subunit beta' O...    29   8.5  

>sp|P0C1J2|CWC27_RHIOR Peptidyl-prolyl isomerase cwc27 OS=Rhizopus
           oryzae GN=cwc27 PE=3 SV=1
          Length = 524

 Score = 34.7 bits (78), Expect = 0.15
 Identities = 15/40 (37%), Positives = 25/40 (62%), Gaps = 2/40 (5%)
 Frame = -1

Query: 254 AEDD--DSGWLTHRLVFNSAKGKRDEMARNDDPEQYVLYD 141
           AE+D  D+GW++H+L+F      +D M R +  + YV+ D
Sbjct: 422 AEEDVSDAGWISHKLIFEKDLKGKDLMKRRETVDDYVVID 461


>sp|Q6GLX7|SDC10_XENLA Peptidyl-prolyl cis-trans isomerase SDCCAG10
           OS=Xenopus laevis GN=sdccag10 PE=2 SV=1
          Length = 477

 Score = 33.1 bits (74), Expect = 0.45
 Identities = 17/58 (29%), Positives = 31/58 (53%)
 Frame = -1

Query: 251 EDDDSGWLTHRLVFNSAKGKRDEMARNDDPEQYVLYDLLVEKGQEKFDKMQARMKRKE 78
           E++D GWL+H L F    GK  + A   D + + +YD      + + ++ +  MK+K+
Sbjct: 418 EENDKGWLSHVLQFEEKSGKVKD-ANMQDEDTFEIYDPRNPVNKRRREESKKIMKQKK 474


>sp|Q17QX9|SDC10_BOVIN Peptidyl-prolyl cis-trans isomerase SDCCAG10
           OS=Bos taurus GN=SDCCAG10 PE=2 SV=1
          Length = 473

 Score = 32.3 bits (72), Expect = 0.76
 Identities = 21/67 (31%), Positives = 35/67 (52%), Gaps = 3/67 (4%)
 Frame = -1

Query: 266 DVSAAE-DDDSGWLTHRLVFNSAKGKRDEMARNDDPEQYVLYDLL--VEKGQEKFDKMQA 96
           D+S  E +DD GW++H L F   K ++ + A   D + + +YD    V K + +  K   
Sbjct: 408 DISETEVEDDEGWMSHVLQFED-KSRKVKDASMQDSDTFEIYDPRNPVNKRRREESKKLM 466

Query: 95  RMKRKER 75
           R K++ R
Sbjct: 467 REKKERR 473


>sp|Q4IPB3|CWC27_GIBZE Peptidyl-prolyl isomerase CWC27 OS=Gibberella
           zeae GN=CWC27 PE=3 SV=1
          Length = 548

 Score = 32.3 bits (72), Expect = 0.76
 Identities = 19/57 (33%), Positives = 28/57 (49%)
 Frame = -1

Query: 251 EDDDSGWLTHRLVFNSAKGKRDEMARNDDPEQYVLYDLLVEKGQEKFDKMQARMKRK 81
           E DD GW++H L F + K  +D   R    E+ V+ D   +    K +K  AR  R+
Sbjct: 461 ESDDEGWMSHALSFAADKLGKDLSNRRKAEEELVVIDPREKARTLKDEKKAARDARQ 517


>sp|Q7ZW86|SDC10_DANRE Peptidyl-prolyl cis-trans isomerase SDCCAG10
           OS=Danio rerio GN=sdccag10 PE=2 SV=1
          Length = 470

 Score = 32.0 bits (71), Expect = 1.00
 Identities = 14/38 (36%), Positives = 23/38 (60%)
 Frame = -1

Query: 254 AEDDDSGWLTHRLVFNSAKGKRDEMARNDDPEQYVLYD 141
           AEDDD GW+ H L F+  + ++ + A   D + + +YD
Sbjct: 410 AEDDDKGWMAHVLHFDE-QSRKVKDANMQDEDTFEIYD 446


>sp|A0JP80|FIT2_XENTR Protein FIT2 homolog OS=Xenopus tropicalis
           PE=2 SV=1
          Length = 260

 Score = 30.8 bits (68), Expect = 2.2
 Identities = 16/51 (31%), Positives = 25/51 (49%)
 Frame = +2

Query: 47  SVIWVLQPTPALFSSSLLASCRTFLDPSQPKDHKERIAQGRHSGPSHPFSL 199
           ++IW L     L+  ++  SC      S PK+H++R     HSG  H F +
Sbjct: 101 TLIWYLCTNLFLYIENITGSCYESEAMSDPKEHQDRRECRLHSGYWHGFDI 151


>sp|Q5R7W3|SDC10_PONAB Peptidyl-prolyl cis-trans isomerase SDCCAG10
           OS=Pongo abelii GN=SDCCAG10 PE=2 SV=1
          Length = 473

 Score = 30.4 bits (67), Expect = 2.9
 Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
 Frame = -1

Query: 248 DDDSGWLTHRLVFNSAKGKRDEMARNDDPEQYVLYDLL--VEKGQEKFDKMQARMKRKER 75
           +DD GW++H L F   K ++ + A   D + + +YD    V K + +  K   R K++ R
Sbjct: 415 EDDEGWMSHVLQFED-KSRKVKDASMQDSDTFEIYDPRNPVNKRRREESKKLMREKKERR 473


>sp|Q4R713|SDC10_MACFA Peptidyl-prolyl cis-trans isomerase SDCCAG10
           OS=Macaca fascicularis GN=SDCCAG10 PE=2 SV=1
          Length = 473

 Score = 30.4 bits (67), Expect = 2.9
 Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
 Frame = -1

Query: 248 DDDSGWLTHRLVFNSAKGKRDEMARNDDPEQYVLYDLL--VEKGQEKFDKMQARMKRKER 75
           +DD GW++H L F   K ++ + A   D + + +YD    V K + +  K   R K++ R
Sbjct: 415 EDDEGWMSHVLQFED-KSRKVKDASMQDSDTFEIYDPRNPVNKRRREESKKLMREKKERR 473


>sp|Q6UX04|SDC10_HUMAN Peptidyl-prolyl cis-trans isomerase SDCCAG10
           OS=Homo sapiens GN=SDCCAG10 PE=1 SV=1
          Length = 472

 Score = 30.4 bits (67), Expect = 2.9
 Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
 Frame = -1

Query: 248 DDDSGWLTHRLVFNSAKGKRDEMARNDDPEQYVLYDLL--VEKGQEKFDKMQARMKRKER 75
           +DD GW++H L F   K ++ + A   D + + +YD    V K + +  K   R K++ R
Sbjct: 414 EDDEGWMSHVLQFED-KSRKVKDASMQDSDTFEIYDPRNPVNKRRREESKKLMREKKERR 472


>sp|Q5F450|PAN2_CHICK PAB-dependent poly(A)-specific ribonuclease
           subunit 2 OS=Gallus gallus GN=PAN2 PE=2 SV=1
          Length = 1197

 Score = 30.4 bits (67), Expect = 2.9
 Identities = 14/42 (33%), Positives = 20/42 (47%), Gaps = 9/42 (21%)
 Frame = -1

Query: 233 WLTHRLVFNSAKGKR---------DEMARNDDPEQYVLYDLL 135
           W+ H +     K K          DE++ NDDPE   +YDL+
Sbjct: 807 WIPHAIKMRLTKNKELDVCNWSESDELSPNDDPESVYVYDLM 848
tr_hit_id A9T5X8
Definition tr|A9T5X8|A9T5X8_PHYPA Peptidyl-prolyl cis-trans isomerase OS=Physcomitrella patens subsp. patens
Align length 64
Score (bit) 79.7
E-value 7.0e-14
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP911859|Adiantum capillus-veneris mRNA, clone:
YMU001_000010_A10.
         (266 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9T5X8|A9T5X8_PHYPA Peptidyl-prolyl cis-trans isomerase OS=Ph...    80   7e-14
tr|B6T621|B6T621_MAIZE Peptidyl-prolyl isomerase CWC27 OS=Zea ma...    77   6e-13
tr|B4FJ63|B4FJ63_MAIZE Putative uncharacterized protein OS=Zea m...    75   2e-12
tr|Q0JLQ1|Q0JLQ1_ORYSJ Peptidyl-prolyl cis-trans isomerase OS=Or...    75   2e-12
tr|A2WRT5|A2WRT5_ORYSI Peptidyl-prolyl cis-trans isomerase OS=Or...    75   2e-12
tr|Q6Q152|Q6Q152_ARATH Peptidyl-prolyl cis-trans isomerase OS=Ar...    72   2e-11
tr|A9PGD9|A9PGD9_POPTR Putative uncharacterized protein OS=Popul...    72   2e-11
tr|A7P4N5|A7P4N5_VITVI Peptidyl-prolyl cis-trans isomerase OS=Vi...    70   5e-11
tr|A8J9P9|A8J9P9_CHLRE Peptidyl-prolyl cis-trans isomerase OS=Ch...    47   5e-04
tr|Q0ICH8|Q0ICH8_SYNS3 Putative uncharacterized protein OS=Synec...    37   0.37 
tr|B2B0W7|B2B0W7_PODAN Predicted CDS Pa_3_7560 OS=Podospora anse...    35   1.9  
tr|Q2GPD4|Q2GPD4_CHAGB Peptidyl-prolyl cis-trans isomerase OS=Ch...    34   4.1  
tr|Q9HZ35|Q9HZ35_PSEAE Putative uncharacterized protein OS=Pseud...    33   5.4  
tr|Q02Q12|Q02Q12_PSEAB Putative periplasmic inhibitor/zinc-resis...    33   5.4  
tr|A6V2L7|A6V2L7_PSEA7 Putative uncharacterized protein OS=Pseud...    33   5.4  
tr|B7V8G6|B7V8G6_PSEAE Putative periplasmic inhibitor/zinc-resis...    33   5.4  
tr|A3L6F9|A3L6F9_PSEAE Putative uncharacterized protein OS=Pseud...    33   5.4  
tr|A3KWM8|A3KWM8_PSEAE Putative uncharacterized protein OS=Pseud...    33   5.4  
tr|B2VVW2|B2VVW2_PYRTR Peptidyl-prolyl isomerase CWC27 OS=Pyreno...    33   5.4  
tr|A7E9S6|A7E9S6_SCLS1 Peptidyl-prolyl cis-trans isomerase OS=Sc...    33   5.4  
tr|Q88EG1|Q88EG1_PSEPK Putative uncharacterized protein OS=Pseud...    33   7.1  
tr|A9PH04|A9PH04_POPTR Putative uncharacterized protein OS=Popul...    33   7.1  
tr|A6RQU9|A6RQU9_BOTFB Peptidyl-prolyl cis-trans isomerase OS=Bo...    33   7.1  
tr|B0KRX7|B0KRX7_PSEPG Putative uncharacterized protein OS=Pseud...    33   9.2  
tr|A5W0A5|A5W0A5_PSEP1 Putative uncharacterized protein OS=Pseud...    33   9.2  
tr|B8MTZ2|B8MTZ2_9EURO Ribosomal small subunit assembly protein,...    33   9.2  

>tr|A9T5X8|A9T5X8_PHYPA Peptidyl-prolyl cis-trans isomerase
           OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_140808 PE=3 SV=1
          Length = 497

 Score = 79.7 bits (195), Expect = 7e-14
 Identities = 33/64 (51%), Positives = 48/64 (75%)
 Frame = -1

Query: 245 DDSGWLTHRLVFNSAKGKRDEMARNDDPEQYVLYDLLVEKGQEKFDKMQARMKRKEREWA 66
           D+  WL+H L F     K+D+MA+N+DP QY++YD L+EKG+EKF+K QA+ K++ REWA
Sbjct: 433 DEEDWLSHELKFEKDPTKKDDMAKNEDPNQYMVYDPLLEKGKEKFNKEQAKFKKRNREWA 492

Query: 65  VKPI 54
            K +
Sbjct: 493 GKSL 496


>tr|B6T621|B6T621_MAIZE Peptidyl-prolyl isomerase CWC27 OS=Zea mays
           PE=2 SV=1
          Length = 514

 Score = 76.6 bits (187), Expect = 6e-13
 Identities = 37/62 (59%), Positives = 47/62 (75%)
 Frame = -1

Query: 251 EDDDSGWLTHRLVFNSAKGKRDEMARNDDPEQYVLYDLLVEKGQEKFDKMQARMKRKERE 72
           EDD  GW T+ L F  +  K D MAR DDP+ YV+ D L+EKG+EKF+KMQA++KR+ERE
Sbjct: 449 EDDYKGWHTNLLSFLPSSSK-DGMARKDDPDDYVVVDPLLEKGKEKFNKMQAKLKRRERE 507

Query: 71  WA 66
           WA
Sbjct: 508 WA 509


>tr|B4FJ63|B4FJ63_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 513

 Score = 75.1 bits (183), Expect = 2e-12
 Identities = 36/62 (58%), Positives = 46/62 (74%)
 Frame = -1

Query: 251 EDDDSGWLTHRLVFNSAKGKRDEMARNDDPEQYVLYDLLVEKGQEKFDKMQARMKRKERE 72
           EDD  GW T+ L F  +  K D M R DDP+ YV+ D L+EKG+EKF+KMQA++KR+ERE
Sbjct: 448 EDDYKGWHTNLLSFLPSSSK-DGMTRKDDPDDYVVVDPLLEKGKEKFNKMQAKLKRRERE 506

Query: 71  WA 66
           WA
Sbjct: 507 WA 508


>tr|Q0JLQ1|Q0JLQ1_ORYSJ Peptidyl-prolyl cis-trans isomerase OS=Oryza
           sativa subsp. japonica GN=Os01g0582400 PE=3 SV=1
          Length = 499

 Score = 74.7 bits (182), Expect = 2e-12
 Identities = 34/62 (54%), Positives = 47/62 (75%)
 Frame = -1

Query: 251 EDDDSGWLTHRLVFNSAKGKRDEMARNDDPEQYVLYDLLVEKGQEKFDKMQARMKRKERE 72
           E+D +GW ++RL F     K D M R DDP+ YV+ D L+EKG++KF+KMQA++KR+ERE
Sbjct: 434 EEDYTGWHSNRLTFEPDSSK-DGMTRKDDPDDYVVVDPLLEKGKQKFNKMQAKLKRRERE 492

Query: 71  WA 66
           WA
Sbjct: 493 WA 494


>tr|A2WRT5|A2WRT5_ORYSI Peptidyl-prolyl cis-trans isomerase OS=Oryza
           sativa subsp. indica GN=OsI_02575 PE=3 SV=1
          Length = 499

 Score = 74.7 bits (182), Expect = 2e-12
 Identities = 34/62 (54%), Positives = 47/62 (75%)
 Frame = -1

Query: 251 EDDDSGWLTHRLVFNSAKGKRDEMARNDDPEQYVLYDLLVEKGQEKFDKMQARMKRKERE 72
           E+D +GW ++RL F     K D M R DDP+ YV+ D L+EKG++KF+KMQA++KR+ERE
Sbjct: 434 EEDYTGWHSNRLTFEPDSSK-DGMTRKDDPDDYVVVDPLLEKGKQKFNKMQAKLKRRERE 492

Query: 71  WA 66
           WA
Sbjct: 493 WA 494


>tr|Q6Q152|Q6Q152_ARATH Peptidyl-prolyl cis-trans isomerase
           OS=Arabidopsis thaliana GN=CYP57 PE=2 SV=1
          Length = 504

 Score = 71.6 bits (174), Expect = 2e-11
 Identities = 34/70 (48%), Positives = 50/70 (71%)
 Frame = -1

Query: 263 VSAAEDDDSGWLTHRLVFNSAKGKRDEMARNDDPEQYVLYDLLVEKGQEKFDKMQARMKR 84
           V   E+D S W   +L F   +GK D+M+R DDP+ Y++ D L+EKG+EKF++MQA+ KR
Sbjct: 435 VDNKEEDLSDWKNVKLKFAPERGK-DKMSRRDDPDAYMVVDPLLEKGKEKFNRMQAKQKR 493

Query: 83  KEREWAVKPI 54
           +EREW+ K +
Sbjct: 494 REREWSGKSL 503


>tr|A9PGD9|A9PGD9_POPTR Putative uncharacterized protein OS=Populus
           trichocarpa PE=2 SV=1
          Length = 141

 Score = 71.6 bits (174), Expect = 2e-11
 Identities = 35/68 (51%), Positives = 48/68 (70%)
 Frame = -1

Query: 257 AAEDDDSGWLTHRLVFNSAKGKRDEMARNDDPEQYVLYDLLVEKGQEKFDKMQARMKRKE 78
           A  +D S W T  L F   +GK D M+R +DP  YV++D L+EKG+EKF++MQA+ KR+E
Sbjct: 74  ADNEDLSDWRTVPLTFAHERGK-DGMSRKEDPNDYVVHDPLLEKGKEKFNRMQAKQKRRE 132

Query: 77  REWAVKPI 54
           REWA K +
Sbjct: 133 REWAGKSL 140


>tr|A7P4N5|A7P4N5_VITVI Peptidyl-prolyl cis-trans isomerase OS=Vitis
           vinifera GN=GSVIVT00032219001 PE=3 SV=1
          Length = 498

 Score = 70.1 bits (170), Expect = 5e-11
 Identities = 38/71 (53%), Positives = 49/71 (69%), Gaps = 1/71 (1%)
 Frame = -1

Query: 263 VSAAEDDDSGWLTH-RLVFNSAKGKRDEMARNDDPEQYVLYDLLVEKGQEKFDKMQARMK 87
           V   EDDD   L   +L F    GK D M+R+DDP  YV++D L+EKG+EKF+KMQA+ K
Sbjct: 428 VEGDEDDDIYSLRGTQLKFTPEPGK-DRMSRSDDPNDYVVHDPLLEKGKEKFNKMQAKQK 486

Query: 86  RKEREWAVKPI 54
           R+EREWA K +
Sbjct: 487 RREREWAGKSL 497


>tr|A8J9P9|A8J9P9_CHLRE Peptidyl-prolyl cis-trans isomerase
           OS=Chlamydomonas reinhardtii GN=CYN57 PE=3 SV=1
          Length = 619

 Score = 47.0 bits (110), Expect = 5e-04
 Identities = 24/59 (40%), Positives = 39/59 (66%), Gaps = 1/59 (1%)
 Frame = -1

Query: 239 SGWLTHRLVFNSAKGKRDEMARN-DDPEQYVLYDLLVEKGQEKFDKMQARMKRKEREWA 66
           +G  +HR  F +AK ++D MAR+ D+ + YV+YD L+EKG+ K+     + K++  EWA
Sbjct: 558 AGLRSHR--FEAAKERKDNMARDMDNLDDYVVYDPLLEKGKGKWSAANQKEKKRANEWA 614


>tr|Q0ICH8|Q0ICH8_SYNS3 Putative uncharacterized protein
           OS=Synechococcus sp. (strain CC9311) GN=sync_0626 PE=4
           SV=1
          Length = 94

 Score = 37.4 bits (85), Expect = 0.37
 Identities = 19/55 (34%), Positives = 29/55 (52%)
 Frame = -1

Query: 236 GWLTHRLVFNSAKGKRDEMARNDDPEQYVLYDLLVEKGQEKFDKMQARMKRKERE 72
           GWLT R  + + +  RDE +  +DP  +V Y   +  GQ  F K +  + RK+ E
Sbjct: 16  GWLTDRCGYWAMRFHRDEQSDENDPRIFVDYGRGMPNGQSAFLKSRKHLPRKDAE 70